01:06:09Started by upstream project "Trigger" build number 51401:06:09originally caused by:
01:06:09 Started by timer
01:06:09Running as SYSTEM
01:06:09Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
01:06:09The recommended git tool is: NONE
01:06:09No credentials specified
01:06:09 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
01:06:09Fetching changes from the remote Git repository
01:06:10 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
01:06:10Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git01:06:10 > git --version # timeout=10
01:06:10 > git --version # 'git version 2.43.5'
01:06:10 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
01:06:17 > git rev-parse origin/merge_ci^{commit} # timeout=10
01:06:17Checking out Revision 1cf34e42d9333be00eb2a9a723644c2ba29462e7 (origin/merge_ci)
01:06:17 > git config core.sparsecheckout # timeout=10
01:06:17 > git checkout -f 1cf34e42d9333be00eb2a9a723644c2ba29462e7 # timeout=10
01:06:18Commit message: "Add version.properties to etc/omero.properties"
01:06:18 > git rev-list --no-walk 4bf6e22e64b17f5ad030844b5574b5061a5e3b91 # timeout=10
01:06:19Cleaning workspace
01:06:19 > git rev-parse --verify HEAD # timeout=10
01:06:19Resetting working tree
01:06:19 > git reset --hard # timeout=10
01:06:19 > git clean -fdx # timeout=10
01:06:21Copied 6 artifacts from "OMERO-python-superbuild-build" build number 43201:06:21[OMERO-build] $ /bin/bash -xe /tmp/jenkins660799469733250852.sh
01:06:21+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
01:06:21+ cd src
01:06:21+ export OMERO_BRANCH=merge_ci
01:06:21+ OMERO_BRANCH=merge_ci
01:06:21+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
01:06:21+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
01:06:22+ source /home/omero/settings.env
01:06:22++ OMERO_DB_HOST=pg
01:06:22++ OMERO_DB_USER=postgres
01:06:22++ OMERO_DB_PASS=
01:06:22++ OMERO_ROOT_PASS=omero
01:06:22++ OMERO_DATA_DIR=/OMERO
01:06:22++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:06:22+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
01:06:28+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl01:06:28Collecting zeroc-ice==3.6.5
01:06:29 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:06:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.0 MB/s eta 0:00:00
01:06:31Installing collected packages: zeroc-ice
01:06:32Successfully installed zeroc-ice-3.6.5
01:06:3201:06:32[notice] A new release of pip available: 22.3.1 -> 25.1.1
01:06:32[notice] To update, run: python3.11 -m pip install --upgrade pip
01:06:32+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
01:06:33Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
01:06:33Collecting setuptools<66
01:06:33 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB)
01:06:34Collecting omero-py
01:06:34 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
01:06:34Collecting urllib3<2
01:06:34 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:06:34Collecting appdirs
01:06:34 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:06:34Collecting future
01:06:34 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:06:35Collecting numpy<3
01:06:35 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
01:06:36Collecting Pillow>=10.0.0
01:06:36 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
01:06:36Collecting PyYAML
01:06:36 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
01:06:36Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:06:36Collecting requests
01:06:36 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
01:06:36Collecting portalocker
01:06:36 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:06:37Collecting charset_normalizer<4,>=2
01:06:37 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
01:06:37Collecting idna<4,>=2.5
01:06:37 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:06:37Collecting certifi>=2017.4.17
01:06:37 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
01:06:37Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
01:06:37 Attempting uninstall: setuptools
01:06:37 Found existing installation: setuptools 65.5.1
01:06:38 Uninstalling setuptools-65.5.1:
01:06:38 Successfully uninstalled setuptools-65.5.1
01:06:46Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.0 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
01:06:4601:06:46[notice] A new release of pip available: 22.3.1 -> 25.1.1
01:06:46[notice] To update, run: python3.11 -m pip install --upgrade pip
01:06:46+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
01:06:46++ deactivate nondestructive
01:06:46++ '[' -n '' ']'
01:06:46++ '[' -n '' ']'
01:06:46++ hash -r
01:06:46++ '[' -n '' ']'
01:06:46++ unset VIRTUAL_ENV
01:06:46++ unset VIRTUAL_ENV_PROMPT
01:06:46++ '[' '!' nondestructive = nondestructive ']'
01:06:46++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
01:06:46++ export VIRTUAL_ENV
01:06:46++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:46++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:06:46++ export PATH
01:06:46++ '[' -n '' ']'
01:06:46++ '[' -z '' ']'
01:06:46++ _OLD_VIRTUAL_PS1=
01:06:46++ PS1='(omero-virtualenv) '
01:06:46++ export PS1
01:06:46++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
01:06:46++ export VIRTUAL_ENV_PROMPT
01:06:46++ hash -r
01:06:46+ source docs/hudson/OMERO.sh
01:06:46++ set -e
01:06:46++ set -u
01:06:46++ set -x
01:06:46++ source docs/hudson/functions.sh
01:06:46++ echo Building merge_ci
01:06:46Building merge_ci
01:06:46++ python3 ./build.py build-dev release-all
01:06:46Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:06:4801:06:48check-ivy:
01:06:48Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
01:06:48Created dir: /home/omero/workspace/OMERO-build/src/target
01:06:48:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:06:48:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:06:4901:06:49build-scons:
01:06:49Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:06:49No sub-builds to iterate on
01:06:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:06:5001:06:50buildlist:
01:06:50:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:06:50:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:06:5001:06:50clean:
01:06:50Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:06:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:06:5101:06:51python-clean:
01:06:51running clean
01:06:51WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:06:51/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-1cf34e42d9-ice36-b439') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:06:51 warnings.warn(
01:06:51Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
01:06:51Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:06:5201:06:52python-clean:
01:06:52WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:06:52running clean
01:06:52/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-1cf34e42d9-ice36-b439') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:06:52 warnings.warn(
01:06:52Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
01:06:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:06:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:06:52Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:06:5301:06:53python-clean:
01:06:53WARNING: '' not a valid package name; please use only .-separated package names in setup.py
01:06:53/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-1cf34e42d9-ice36-b439') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
01:06:53 warnings.warn(
01:06:53running clean
01:06:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
01:06:53Deleting directory /home/omero/workspace/OMERO-build/src/target
01:06:5301:06:53build-scons:
01:06:53Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
01:06:5301:06:53build:
01:06:53No sub-builds to iterate on
01:06:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:06:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:06:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:06:53Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:06:5301:06:53tools-init:
01:06:53no-op
01:06:5401:06:54retrieve:
01:06:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:06:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:06:55WARNING: An illegal reflective access operation has occurred
01:06:55WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
01:06:55WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
01:06:55WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
01:06:55WARNING: All illegal access operations will be denied in a future release
01:07:2201:07:22prepare:
01:07:22Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:07:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
01:07:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
01:07:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:07:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:07:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:07:22Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
01:07:22Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
01:07:2301:07:23pre-compile:
01:07:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:07:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:07:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:07:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:07:23Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
01:07:2301:07:23compile:
01:07:23no-op
01:07:2301:07:23package:
01:07:23Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
01:07:2401:07:24install:
01:07:24:: delivering :: omero#omero_client;working@cf2e55bb86e5 :: 5.6.3-564-1cf34e42d9-ice36-b439 :: integration :: Wed Jun 11 01:06:53 UTC 2025
01:07:24 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
01:07:24:: publishing :: omero#omero_client
01:07:24 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-564-1cf34e42d9-ice36-b439/omero_client-5.6.3-564-1cf34e42d9-ice36-b439.jar
01:07:24 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-564-1cf34e42d9-ice36-b439/omero_client-5.6.3-564-1cf34e42d9-ice36-b439.xml
01:07:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:07:24Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:07:2501:07:25retrieve:
01:07:25:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:25:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:07:25Entering /home/omero/workspace/OMERO-build/src/components/tools...
01:07:2501:07:25dist:
01:07:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
01:07:25Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
01:07:25Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:07:25Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
01:07:25Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
01:07:26Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
01:07:26Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
01:07:26Entering /home/omero/workspace/OMERO-build/src/components/tests...
01:07:26Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:07:2601:07:26copy-licenses:
01:07:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:07:26Created dir: /home/omero/workspace/OMERO-build/src/dist/share
01:07:26Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
01:07:2601:07:26copy-history:
01:07:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
01:07:2601:07:26copy-etc:
01:07:26Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
01:07:26Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
01:07:2701:07:27copy-sql:
01:07:27Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
01:07:3301:07:33copy-server:
01:07:33 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
01:07:3301:07:33copy-client:
01:07:33Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
01:07:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
01:07:3501:07:35update-version:
01:07:35Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
01:07:3501:07:35create-workdirs:
01:07:35Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
01:07:35Created dir: /home/omero/workspace/OMERO-build/src/dist/var
01:07:3501:07:35copy-luts:
01:07:35Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:07:35Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
01:07:3501:07:35test-compile:
01:07:35:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:07:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
01:07:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:07:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
01:07:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:07:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
01:07:36Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
01:07:36Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:07:3701:07:37testng-init:
01:07:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:07:4301:07:43,110 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
01:07:4301:07:43,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - No custom configurators were discovered as a service.
01:07:4301:07:43,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:4301:07:43,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
01:07:4301:07:43,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
01:07:4301:07:43,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
01:07:4301:07:43,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
01:07:4301:07:43,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:4301:07:43,124 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
01:07:4301:07:43,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
01:07:4301:07:43,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:4301:07:43,173 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs multiple times on the classpath.
01:07:4301:07:43,173 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
01:07:4301:07:43,173 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
01:07:4301:07:43,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
01:07:4301:07:43,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
01:07:4301:07:43,555 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
01:07:4301:07:43,559 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
01:07:4301:07:43,559 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Please move "immediateFlush" property into the enclosing appender.
01:07:4301:07:43,647 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Setting the "immediateFlush" property of the enclosing appender to true
01:07:4301:07:43,648 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
01:07:4301:07:43,648 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
01:07:4301:07:43,648 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
01:07:4301:07:43,648 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
01:07:4301:07:43,648 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
01:07:4301:07:43,648 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
01:07:4301:07:43,650 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@513156fd - End of configuration.
01:07:4301:07:43,653 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4fd43b14 - Registering current configuration as safe fallback point
01:07:4301:07:43,653 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 529 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
01:07:4301:07:43lifecycle.test-compile:
01:07:43Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:07:43Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
01:07:44warning: [options] bootstrap class path not set in conjunction with -source 8
01:07:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:47import omero.grid.RawAccessRequest;
01:07:47 ^
01:07:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:47import omero.grid.RawAccessRequest;
01:07:47 ^
01:07:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:47import omero.grid.RawAccessRequest;
01:07:47 ^
01:07:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
01:07:47import omero.model.ImportJob;
01:07:47 ^
01:07:47/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:07:47import omero.model.ImportJobI;
01:07:47 ^
01:07:49/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
01:07:49 IObject link = (IObject) linkClass.newInstance();
01:07:49 ^
01:07:49 where T is a type-variable:
01:07:49 T extends Object declared in class Class
01:07:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
01:07:50 T copy = (T) obj.getClass().newInstance();
01:07:50 ^
01:07:50 where T is a type-variable:
01:07:50 T extends Object declared in class Class
01:07:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:50 RawAccessRequest raw = new RawAccessRequest();
01:07:50 ^
01:07:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:50 RawAccessRequest raw = new RawAccessRequest();
01:07:50 ^
01:07:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:07:50 raw.repoUuid = legacy.root().getHash().getValue();
01:07:50 ^
01:07:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
01:07:50 raw.command = "rm";
01:07:50 ^
01:07:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
01:07:50 raw.args = Arrays.asList(path);
01:07:50 ^
01:07:50/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
01:07:50 final IObject link = linkClass.newInstance();
01:07:50 ^
01:07:50 where T is a type-variable:
01:07:50 T extends Object declared in class Class
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
01:07:51 originalLink.setChild(annotationClass.newInstance());
01:07:51 ^
01:07:51 where T is a type-variable:
01:07:51 T extends Object declared in class Class
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:07:51 RoiResult r = svc.findByImage(id, new RoiOptions());
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:51 final RawAccessRequest request = new RawAccessRequest();
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:51 final RawAccessRequest request = new RawAccessRequest();
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:07:51 request.repoUuid = repo.root().getHash().getValue();
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
01:07:51 request.command = "exists";
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
01:07:51 request.args = Collections.singletonList(dirPath);
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:51 final RawAccessRequest request = new RawAccessRequest();
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
01:07:51 final RawAccessRequest request = new RawAccessRequest();
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
01:07:51 request.repoUuid = repo.root().getHash().getValue();
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
01:07:51 request.command = "exists";
01:07:51 ^
01:07:51/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
01:07:51 request.args = Collections.singletonList(dirName);
01:07:51 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
01:07:52 final ImportJob importJob = new ImportJobI();
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
01:07:52 final ImportJob importJob = new ImportJobI();
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
01:07:52 importJob.setImageName(omero.rtypes.rstring(name));
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
01:07:52 importJob.setImageDescription(omero.rtypes.rstring(desc));
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:07:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
01:07:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:07:52 final String savedName = sent.getImageName().getValue().toString();
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:07:52 final String savedDesc = sent.getImageDescription().getValue().toString();
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:07:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
01:07:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
01:07:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
01:07:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 RoiResult r = svc.findByImage(image.getId().getValue(),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
01:07:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
01:07:52 table = svc.getTable(f.getId().getValue());
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 RoiResult r = svc.findByImage(image.getId().getValue(),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
01:07:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:07:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
01:07:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
01:07:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
01:07:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:07:52 svc.getShapeStatsRestricted(
01:07:52 ^
01:07:52/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
01:07:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
01:07:52 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:07:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:07:53 request.typesToIgnore = Collections.singletonList("TagAnnotation");
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:07:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:07:53 request.typesToIgnore = Collections.singletonList("Annotation");
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
01:07:53 request.typesToIgnore = Collections.singletonList("Annotation");
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:07:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:07:53 p2.setRelatedTo(p1);
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:07:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:07:53 pixels1.setRelatedTo(pixels2);
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:07:53 Pixels pixels = pixels1.getRelatedTo();
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:07:53 Assert.assertNull(pixels1.getRelatedTo());
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
01:07:53 pixels1.setRelatedTo(pixels2);
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:07:53 Pixels pixels = pixels1.getRelatedTo();
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
01:07:53 Assert.assertNull(pixels1.getRelatedTo());
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
01:07:53 ^
01:07:53/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
01:07:53 l = svc.getRoiMeasurements(image.getId().getValue(), options);
01:07:53 ^
01:07:53Note: Some input files use unchecked or unsafe operations.
01:07:53Note: Recompile with -Xlint:unchecked for details.
01:07:5388 warnings
01:07:53Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1326735369.tmp
01:07:54Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
01:07:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:07:54:: delivering :: omero#OmeroJava-test;working@cf2e55bb86e5 :: 5.6.3-564-1cf34e42d9-ice36-b439 :: integration :: Wed Jun 11 01:07:36 UTC 2025
01:07:54 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
01:07:54:: publishing :: omero#OmeroJava-test
01:07:54 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-564-1cf34e42d9-ice36-b439.jar
01:07:54 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-564-1cf34e42d9-ice36-b439.xml
01:07:5401:07:54build-eclipse:
01:07:54No sub-builds to iterate on
01:07:54Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
01:07:5401:07:54retrieve:
01:07:54:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
01:07:54:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
01:07:5801:07:58prepare:
01:07:58Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
01:08:0001:08:00release-clients:
01:08:00Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:08:0801:08:08release-zip:
01:08:08Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:08:2501:08:25BUILD SUCCESSFUL
01:08:25Total time: 1 minute 38 seconds
01:08:25++ '[' -d .git ']'
01:08:25++ python3 ./build.py release-src
01:08:25Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
01:08:2601:08:26release-src-git:
01:08:26Releasing openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439
01:08:28 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:08:28 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439-base.zip
01:08:3001:08:30BUILD SUCCESSFUL
01:08:30Total time: 5 seconds
01:08:30++ echo BUILD_NUMBER=439
01:08:30++ echo OMERO_BRANCH=merge_ci
01:08:30++ git_info
01:08:30+++ git rev-parse HEAD
01:08:30++ HEAD=1cf34e42d9333be00eb2a9a723644c2ba29462e7
01:08:30++ git log --max-count=1 1cf34e42d9333be00eb2a9a723644c2ba29462e7
01:08:30++ env
01:08:30++ sort
01:08:31Archiving artifacts
01:09:07Finished: SUCCESS
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