00:40:03Started by upstream project "Trigger" build number 8900:40:03originally caused by:
00:40:03 Started by timer
00:40:03Running as SYSTEM
00:40:03Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
00:40:03The recommended git tool is: NONE
00:40:03No credentials specified
00:40:03 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
00:40:03Fetching changes from the remote Git repository
00:40:03 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
00:40:03Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git00:40:03 > git --version # timeout=10
00:40:03 > git --version # 'git version 2.39.3'
00:40:03 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
00:40:12 > git rev-parse origin/merge_ci^{commit} # timeout=10
00:40:12Checking out Revision d20ad120579feb04e94ff7b6927539efc57314e2 (origin/merge_ci)
00:40:12 > git config core.sparsecheckout # timeout=10
00:40:12 > git checkout -f d20ad120579feb04e94ff7b6927539efc57314e2 # timeout=10
00:40:12Commit message: "Add version.properties to etc/omero.properties"
00:40:12 > git rev-list --no-walk 3a59a160f4981c740e7d7d0fbcc1d65573e9cc93 # timeout=10
00:40:12Cleaning workspace
00:40:12 > git rev-parse --verify HEAD # timeout=10
00:40:12Resetting working tree
00:40:12 > git reset --hard # timeout=10
00:40:12 > git clean -fdx # timeout=10
00:40:13Copied 6 artifacts from "OMERO-python-superbuild-build" build number 7900:40:13[OMERO-build] $ /bin/bash -xe /tmp/jenkins3364384909864950784.sh
00:40:13+ mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz .
00:40:13+ cd src
00:40:13+ export OMERO_BRANCH=merge_ci
00:40:13+ OMERO_BRANCH=merge_ci
00:40:13+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
00:40:13+ source /home/omero/settings.env
00:40:13++ OMERO_DB_HOST=pg
00:40:13++ OMERO_DB_USER=postgres
00:40:13++ OMERO_DB_PASS=
00:40:13++ OMERO_ROOT_PASS=omero
00:40:13++ OMERO_DATA_DIR=/OMERO
00:40:13++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:40:13+ python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
00:40:17+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl00:40:18Collecting zeroc-ice==3.6.5
00:40:19 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
00:40:21WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:40:21You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:21+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py
00:40:21Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.0.0)
00:40:22Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2)
00:40:22Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4)
00:40:22Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4)
00:40:22Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18)
00:40:22Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2)
00:40:22Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1)
00:40:22Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5)
00:40:22Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0)
00:40:22Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0)
00:40:22Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0)
00:40:22Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6)
00:40:22Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2)
00:40:22Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2)
00:40:22WARNING: You are using pip version 21.2.3; however, version 24.0 is available.
00:40:22You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command.
00:40:22+ source docs/hudson/OMERO.sh
00:40:22++ set -e
00:40:22++ set -u
00:40:22++ set -x
00:40:22++ source docs/hudson/functions.sh
00:40:22++ echo Building merge_ci
00:40:22Building merge_ci
00:40:22++ python3 ./build.py build-dev release-all
00:40:22OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:40:23Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:40:2300:40:23check-ivy:
00:40:23Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
00:40:23Created dir: /home/omero/workspace/OMERO-build/src/target
00:40:24:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:24:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:2500:40:25build-scons:
00:40:25Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:26No sub-builds to iterate on
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:2600:40:26buildlist:
00:40:26:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:26:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:2600:40:26clean:
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:26Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:2600:40:26python-clean:
00:40:26WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:26/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-d20ad12057-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:26 warnings.warn(
00:40:26running clean
00:40:26Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:2700:40:27python-clean:
00:40:27WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:27/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-d20ad12057-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:27 warnings.warn(
00:40:27running clean
00:40:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:2700:40:27python-clean:
00:40:27WARNING: '' not a valid package name; please use only .-separated package names in setup.py
00:40:27/usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-469-d20ad12057-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
00:40:27 warnings.warn(
00:40:27running clean
00:40:27Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
00:40:27Deleting directory /home/omero/workspace/OMERO-build/src/target
00:40:2700:40:27build-scons:
00:40:27Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
00:40:2700:40:27build:
00:40:27No sub-builds to iterate on
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:40:27Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:40:2700:40:27tools-init:
00:40:27no-op
00:40:2800:40:28retrieve:
00:40:28:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:28:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:4600:40:46prepare:
00:40:46Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:40:46Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
00:40:46Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
00:40:4600:40:46pre-compile:
00:40:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:46Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:48Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
00:40:4800:40:48compile:
00:40:48no-op
00:40:4800:40:48package:
00:40:48Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
00:40:4900:40:49install:
00:40:49:: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-469-d20ad12057-ice36 :: integration :: Sat Jun 01 00:40:27 UTC 2024
00:40:49 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
00:40:49:: publishing :: omero#omero_client
00:40:49 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-d20ad12057-ice36/omero_client-5.6.3-469-d20ad12057-ice36.jar
00:40:49 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-469-d20ad12057-ice36/omero_client-5.6.3-469-d20ad12057-ice36.xml
00:40:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:49Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:40:4900:40:49retrieve:
00:40:49:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:40:49:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:40:50Entering /home/omero/workspace/OMERO-build/src/components/tools...
00:40:5000:40:50dist:
00:40:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
00:40:50Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
00:40:50Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:50Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
00:40:50Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
00:40:50Copying 28 files to /home/omero/workspace/OMERO-build/src/dist
00:40:50Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
00:40:50Entering /home/omero/workspace/OMERO-build/src/components/tests...
00:40:50Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:40:5000:40:50copy-licenses:
00:40:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:50Created dir: /home/omero/workspace/OMERO-build/src/dist/share
00:40:50Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
00:40:5000:40:50copy-history:
00:40:50Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
00:40:5000:40:50copy-etc:
00:40:50Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
00:40:51Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
00:40:5100:40:51copy-sql:
00:40:51Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
00:40:5800:40:58copy-server:
00:40:58 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
00:40:5800:40:58copy-client:
00:40:58Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
00:41:00 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
00:41:0000:41:00update-version:
00:41:00Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
00:41:0000:41:00create-workdirs:
00:41:00Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
00:41:00Created dir: /home/omero/workspace/OMERO-build/src/dist/var
00:41:0000:41:00copy-luts:
00:41:00Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:00Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
00:41:0100:41:01test-compile:
00:41:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
00:41:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
00:41:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
00:41:01Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
00:41:01Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:0100:41:01testng-init:
00:41:01:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:41:01:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:0500:41:05,018 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
00:41:0500:41:05,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - No custom configurators were discovered as a service.
00:41:0500:41:05,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:0500:41:05,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
00:41:0500:41:05,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
00:41:0500:41:05,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
00:41:0500:41:05,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
00:41:0500:41:05,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:0500:41:05,028 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
00:41:0500:41:05,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
00:41:0500:41:05,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:0500:41:05,029 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs multiple times on the classpath.
00:41:0500:41:05,029 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
00:41:0500:41:05,029 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7cc89f6 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
00:41:0500:41:05,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
00:41:0500:41:05,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
00:41:0500:41:05,264 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
00:41:0500:41:05,267 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
00:41:0500:41:05,267 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Please move "immediateFlush" property into the enclosing appender.
00:41:0500:41:05,330 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4046b407 - Setting the "immediateFlush" property of the enclosing appender to true
00:41:0500:41:05,331 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
00:41:0500:41:05,331 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
00:41:0500:41:05,331 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
00:41:0500:41:05,331 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
00:41:0500:41:05,331 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
00:41:0500:41:05,331 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
00:41:0500:41:05,332 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@39b266b2 - End of configuration.
00:41:0500:41:05,334 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5ea7ad41 - Registering current configuration as safe fallback point
00:41:0500:41:05,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48c5e6fb - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 306 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
00:41:0500:41:05lifecycle.test-compile:
00:41:05Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:05Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
00:41:05warning: [options] bootstrap class path not set in conjunction with -source 8
00:41:08/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:08import omero.grid.RawAccessRequest;
00:41:08 ^
00:41:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:09import omero.grid.RawAccessRequest;
00:41:09 ^
00:41:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:09import omero.grid.RawAccessRequest;
00:41:09 ^
00:41:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:09import omero.model.ImportJob;
00:41:09 ^
00:41:09/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:09import omero.model.ImportJobI;
00:41:09 ^
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
00:41:10 IObject link = (IObject) linkClass.newInstance();
00:41:10 ^
00:41:10 where T is a type-variable:
00:41:10 T extends Object declared in class Class
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
00:41:10 T copy = (T) obj.getClass().newInstance();
00:41:10 ^
00:41:10 where T is a type-variable:
00:41:10 T extends Object declared in class Class
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:10 RawAccessRequest raw = new RawAccessRequest();
00:41:10 ^
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:10 RawAccessRequest raw = new RawAccessRequest();
00:41:10 ^
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:10 raw.repoUuid = legacy.root().getHash().getValue();
00:41:10 ^
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:10 raw.command = "rm";
00:41:10 ^
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:10 raw.args = Arrays.asList(path);
00:41:10 ^
00:41:10/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
00:41:10 final IObject link = linkClass.newInstance();
00:41:10 ^
00:41:10 where T is a type-variable:
00:41:10 T extends Object declared in class Class
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
00:41:11 originalLink.setChild(annotationClass.newInstance());
00:41:11 ^
00:41:11 where T is a type-variable:
00:41:11 T extends Object declared in class Class
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:11 RoiResult r = svc.findByImage(id, new RoiOptions());
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:11 final RawAccessRequest request = new RawAccessRequest();
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:11 final RawAccessRequest request = new RawAccessRequest();
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:11 request.repoUuid = repo.root().getHash().getValue();
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:11 request.command = "exists";
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:11 request.args = Collections.singletonList(dirPath);
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:11 final RawAccessRequest request = new RawAccessRequest();
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
00:41:11 final RawAccessRequest request = new RawAccessRequest();
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
00:41:11 request.repoUuid = repo.root().getHash().getValue();
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
00:41:11 request.command = "exists";
00:41:11 ^
00:41:11/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
00:41:11 request.args = Collections.singletonList(dirName);
00:41:11 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:12 final ImportJob importJob = new ImportJobI();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
00:41:12 final ImportJob importJob = new ImportJobI();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
00:41:12 importJob.setImageName(omero.rtypes.rstring(name));
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
00:41:12 importJob.setImageDescription(omero.rtypes.rstring(desc));
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:12 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:12 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:12 final String savedName = sent.getImageName().getValue().toString();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:12 final String savedDesc = sent.getImageDescription().getValue().toString();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:12 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
00:41:12 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
00:41:12 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
00:41:12 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
00:41:12 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
00:41:12 table = svc.getTable(f.getId().getValue());
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 RoiResult r = svc.findByImage(image.getId().getValue(),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
00:41:12 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:12 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
00:41:12 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
00:41:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
00:41:12 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:12 svc.getShapeStatsRestricted(
00:41:12 ^
00:41:12/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
00:41:12 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
00:41:12 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:13 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:13 request.typesToIgnore = Collections.singletonList("TagAnnotation");
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:13 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:13 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
00:41:13 request.typesToIgnore = Collections.singletonList("Annotation");
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:13 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:13 p2.setRelatedTo(p1);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:13 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:13 pixels1.setRelatedTo(pixels2);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:13 Pixels pixels = pixels1.getRelatedTo();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:13 Assert.assertNull(pixels1.getRelatedTo());
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
00:41:13 pixels1.setRelatedTo(pixels2);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:13 Pixels pixels = pixels1.getRelatedTo();
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
00:41:13 Assert.assertNull(pixels1.getRelatedTo());
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:13 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
00:41:13 ^
00:41:13/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
00:41:13 l = svc.getRoiMeasurements(image.getId().getValue(), options);
00:41:13 ^
00:41:13Note: Some input files use unchecked or unsafe operations.
00:41:13Note: Recompile with -Xlint:unchecked for details.
00:41:1388 warnings
00:41:13Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1451797458.tmp
00:41:13Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
00:41:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:13:: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-469-d20ad12057-ice36 :: integration :: Sat Jun 01 00:41:01 UTC 2024
00:41:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
00:41:13:: publishing :: omero#OmeroJava-test
00:41:13 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-d20ad12057-ice36.jar
00:41:13 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-469-d20ad12057-ice36.xml
00:41:1300:41:13build-eclipse:
00:41:13No sub-builds to iterate on
00:41:13Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
00:41:1400:41:14retrieve:
00:41:14:: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ ::
00:41:14:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
00:41:1600:41:16prepare:
00:41:16Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
00:41:1800:41:18release-clients:
00:41:18Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-469-d20ad12057-ice36.zip
00:41:2500:41:25release-zip:
00:41:25Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-469-d20ad12057-ice36.zip
00:41:3900:41:39BUILD SUCCESSFUL
00:41:39Total time: 1 minute 16 seconds
00:41:39++ '[' -d .git ']'
00:41:39++ python3 ./build.py release-src
00:41:39OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
00:41:40Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
00:41:4100:41:41release-src-git:
00:41:41Releasing openmicroscopy-5.6.3-469-d20ad12057-ice36
00:41:44 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-d20ad12057-ice36.zip
00:41:44 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-469-d20ad12057-ice36-base.zip
00:41:4500:41:45BUILD SUCCESSFUL
00:41:45Total time: 5 seconds
00:41:45++ echo BUILD_NUMBER=80
00:41:45++ echo OMERO_BRANCH=merge_ci
00:41:45++ git_info
00:41:45+++ git rev-parse HEAD
00:41:45++ HEAD=d20ad120579feb04e94ff7b6927539efc57314e2
00:41:45++ git log --max-count=1 d20ad120579feb04e94ff7b6927539efc57314e2
00:41:45++ env
00:41:45++ sort
00:41:45Archiving artifacts
00:42:16Finished: SUCCESS
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