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2026-02-05 00:42:41,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:42:42,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:42:42,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-02-05 00:42:43,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:42:43,345 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:42:43,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-02-05 00:42:44,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-02-05 00:42:44,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:42:45,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-02-05 00:42:45,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:42:45,855 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:42:46,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-02-05 00:42:46,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-02-05 00:42:47,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-05 00:42:47,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:42:48,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-05 00:42:48,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:42:48,740 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-02-05 00:42:48,740 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:42:48,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-05 00:42:48,740 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:42:48,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:42:48,743 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:42:48,745 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:42:48,745 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:42:48,747 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:42:48,751 [ scc.git] DEBUG Already up to date.
2026-02-05 00:42:48,751 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-02-05 00:42:49,019 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-05 00:42:49,020 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-02-05 00:42:49,024 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-02-05 00:42:49,278 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-05 00:42:49,278 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-02-05 00:42:49,282 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-02-05 00:42:49,535 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-05 00:42:49,535 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-02-05 00:42:49,539 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:42:49,539 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:42:49,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:42:49,541 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-05 00:42:49,544 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:42:49,547 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-05 00:42:49,554 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:42:49,557 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-02-05 00:42:49,557 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-02-05 00:42:49,557 [ scc.git] DEBUG requirements.txt | 2 +-
2026-02-05 00:42:49,557 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-02-05 00:42:49,557 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-02-05 00:42:49,557 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-02-05 00:42:49,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:42:49,708 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-05 00:42:49,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:42:49,713 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-05 00:42:49,720 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:42:49,722 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:42:49,722 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:42:50,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:42:50,105 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-05 00:42:50,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:42:50,110 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-05 00:42:50,118 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-02-05 00:42:50,118 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-02-05 00:42:50,118 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 00:42:50,118 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 00:42:50,121 [ scc.git] DEBUG Calling 'git reset --hard 4b9f6018b3195983369299174a7e3fdad2d29046'
2026-02-05 00:42:50,125 [ scc.git] DEBUG HEAD is now at 4b9f601 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-02-05 00:42:50,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:42:50,523 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-05 00:42:50,525 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-02-05 00:42:50,528 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#44](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-02-05 00:42:50,530 [ scc.config] DEBUG Found github.token
2026-02-05 00:42:50,530 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-02-05 00:42:50,530 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:42:50,569 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:42:50,569 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:42:50,571 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:42:50,609 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:42:50,612 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6398dd41d0> has no local changes
2026-02-05 00:42:50,612 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:42:50,618 [ scc.git] DEBUG [detached HEAD 50ef6ca] merge master -Dorg -Ssuccess-only
2026-02-05 00:42:50,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:42:50,619 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:42:51,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-02-05 00:42:51,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-02-05 00:42:52,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-02-05 00:42:52,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-05 00:42:53,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:42:53,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-05 00:42:54,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:42:54,371 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-05 00:42:54,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-02-05 00:42:55,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-02-05 00:42:55,884 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-05 00:42:56,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:42:56,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-05 00:42:57,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:42:57,352 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-05 00:42:57,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-02-05 00:42:58,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-02-05 00:42:58,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-05 00:42:59,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:42:59,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-05 00:43:00,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:00,266 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-05 00:43:00,266 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:00,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-05 00:43:00,266 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:00,266 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:00,269 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:00,271 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:00,271 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:00,274 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:00,281 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-02-05 00:43:00,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-02-05 00:43:01,055 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-02-05 00:43:01,333 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-05 00:43:01,333 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-02-05 00:43:01,337 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-02-05 00:43:01,599 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-05 00:43:01,599 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-02-05 00:43:01,603 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-02-05 00:43:01,867 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-05 00:43:01,867 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-02-05 00:43:01,871 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:01,871 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:01,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:01,874 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-05 00:43:01,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:01,880 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-05 00:43:01,891 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-02-05 00:43:01,891 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-02-05 00:43:01,891 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-05 00:43:01,891 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-05 00:43:01,891 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 00:43:01,892 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 00:43:01,894 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 00:43:01,899 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-05 00:43:02,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:02,044 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-05 00:43:02,048 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 00:43:02,050 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#44](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-02-05 00:43:02,052 [ scc.config] DEBUG Found github.token
2026-02-05 00:43:02,053 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-02-05 00:43:02,053 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-05 00:43:02,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:02,058 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-05 00:43:02,071 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-05 00:43:02,071 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-05 00:43:02,071 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-02-05 00:43:02,071 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 00:43:02,071 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 00:43:02,074 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 00:43:02,079 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-05 00:43:02,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:02,452 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-05 00:43:02,455 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-05 00:43:02,458 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#44](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-02-05 00:43:02,460 [ scc.config] DEBUG Found github.token
2026-02-05 00:43:02,460 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-02-05 00:43:02,460 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-05 00:43:02,462 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:02,464 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-05 00:43:02,473 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:02,477 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-02-05 00:43:02,477 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-02-05 00:43:02,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:02,855 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:02,893 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:02,893 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:02,895 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:02,932 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:02,936 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6398dfa490> has no local changes
2026-02-05 00:43:02,936 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:02,942 [ scc.git] DEBUG [detached HEAD 06197f7] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:02,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:02,943 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:03,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-02-05 00:43:03,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-02-05 00:43:04,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-05 00:43:05,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:05,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:06,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-05 00:43:06,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:06,469 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:43:06,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-02-05 00:43:06,968 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:43:07,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-05 00:43:08,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:08,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:09,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-05 00:43:09,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:09,631 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-05 00:43:10,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-02-05 00:43:10,110 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:43:10,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-05 00:43:11,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:11,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:12,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-05 00:43:12,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:12,746 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-05 00:43:13,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-02-05 00:43:13,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-02-05 00:43:14,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-02-05 00:43:14,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-02-05 00:43:15,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-02-05 00:43:15,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-02-05 00:43:16,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-02-05 00:43:16,190 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:16,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-05 00:43:16,190 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:16,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:16,192 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:16,195 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:16,195 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:16,197 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:16,200 [ scc.git] DEBUG Already up to date.
2026-02-05 00:43:16,200 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-02-05 00:43:16,473 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-05 00:43:16,473 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-02-05 00:43:16,477 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-02-05 00:43:16,734 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-05 00:43:16,734 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-02-05 00:43:16,738 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-02-05 00:43:16,999 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-05 00:43:16,999 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-02-05 00:43:17,003 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:17,003 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:17,003 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:17,006 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-05 00:43:17,008 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:17,010 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-05 00:43:17,017 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:17,020 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-02-05 00:43:17,020 [ scc.git] DEBUG package.json | 2 +-
2026-02-05 00:43:17,020 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-02-05 00:43:17,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:17,175 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-02-05 00:43:17,177 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:17,179 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-02-05 00:43:17,187 [ scc.git] DEBUG Auto-merging package-lock.json
2026-02-05 00:43:17,187 [ scc.git] DEBUG Auto-merging package.json
2026-02-05 00:43:17,188 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:17,191 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-02-05 00:43:17,191 [ scc.git] DEBUG package.json | 2 +-
2026-02-05 00:43:17,191 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-02-05 00:43:17,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:17,576 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-05 00:43:17,579 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:17,581 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-05 00:43:17,589 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:17,592 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:43:17,592 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:43:18,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:18,013 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:18,050 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:18,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:18,052 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:18,090 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:18,093 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f63984bec90> has no local changes
2026-02-05 00:43:18,094 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:18,099 [ scc.git] DEBUG [detached HEAD a3d025f] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:18,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:18,100 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:18,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-02-05 00:43:19,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-02-05 00:43:19,064 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:43:19,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-05 00:43:20,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:20,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:21,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-05 00:43:21,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:21,621 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:43:21,621 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:21,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-05 00:43:21,621 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:21,621 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:21,624 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:21,626 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:21,626 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:21,628 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:21,632 [ scc.git] DEBUG Already up to date.
2026-02-05 00:43:21,632 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-02-05 00:43:21,904 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-02-05 00:43:21,904 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-02-05 00:43:21,908 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:21,908 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:21,908 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:21,910 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-05 00:43:21,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:21,915 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-05 00:43:21,921 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:21,924 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:43:21,924 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:43:22,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:22,075 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:22,114 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:22,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:22,116 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:22,154 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:22,157 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6398ee5b90> has no local changes
2026-02-05 00:43:22,157 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:22,162 [ scc.git] DEBUG [detached HEAD a2c26c5] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:22,163 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:22,163 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:22,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-02-05 00:43:23,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-02-05 00:43:23,125 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:43:23,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-05 00:43:24,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:24,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:25,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-05 00:43:25,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:26,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-05 00:43:26,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-02-05 00:43:26,773 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:43:27,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-02-05 00:43:27,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-02-05 00:43:28,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-05 00:43:28,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:29,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:29,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-05 00:43:30,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:30,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-05 00:43:31,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-02-05 00:43:31,160 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-02-05 00:43:31,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-02-05 00:43:31,639 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:31,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-05 00:43:31,639 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:31,639 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:31,641 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:31,644 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:31,644 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:31,646 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:31,649 [ scc.git] DEBUG Already up to date.
2026-02-05 00:43:31,649 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-02-05 00:43:31,936 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-05 00:43:31,936 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-02-05 00:43:31,940 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-02-05 00:43:32,195 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-05 00:43:32,195 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-02-05 00:43:32,198 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:32,198 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:32,198 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:32,201 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-05 00:43:32,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:32,205 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-05 00:43:32,212 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:32,215 [ scc.git] DEBUG setup.py | 4 +-
2026-02-05 00:43:32,215 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-02-05 00:43:32,215 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-02-05 00:43:32,215 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-02-05 00:43:32,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:32,372 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-02-05 00:43:32,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:32,378 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-02-05 00:43:32,384 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:32,387 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:43:32,387 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:43:32,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:32,769 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:32,807 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:32,807 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:32,810 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:32,847 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:32,850 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f63984cc650> has no local changes
2026-02-05 00:43:32,850 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:32,857 [ scc.git] DEBUG [detached HEAD 37d0833] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:32,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:32,857 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:33,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-02-05 00:43:33,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-02-05 00:43:33,778 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:43:34,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-05 00:43:35,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:35,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:36,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-05 00:43:36,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:36,494 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:43:36,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-02-05 00:43:37,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-02-05 00:43:38,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-05 00:43:38,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:39,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-05 00:43:39,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:39,471 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-05 00:43:39,471 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:39,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-05 00:43:39,471 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:39,471 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:39,474 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:39,476 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:39,476 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:39,479 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:39,481 [ scc.git] DEBUG Already up to date.
2026-02-05 00:43:39,481 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-05 00:43:39,764 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-05 00:43:39,764 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-05 00:43:39,768 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-05 00:43:40,027 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-05 00:43:40,027 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-05 00:43:40,031 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:40,031 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:40,031 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:40,033 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-05 00:43:40,036 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:40,038 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-05 00:43:40,046 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG Auto-merging setup.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-02-05 00:43:40,046 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 00:43:40,046 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 00:43:40,049 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-05 00:43:40,053 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-02-05 00:43:40,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:40,194 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-05 00:43:40,197 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-05 00:43:40,200 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#44](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- omero_signup/urls.py
- omero_signup/signup_settings.py
- setup.py
--conflicts
2026-02-05 00:43:40,202 [ scc.config] DEBUG Found github.token
2026-02-05 00:43:40,202 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-02-05 00:43:40,202 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-05 00:43:40,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:40,207 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-05 00:43:40,214 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:40,216 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:43:40,216 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:43:40,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:40,601 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:40,639 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:40,639 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:40,641 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:40,678 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:40,681 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6398557fd0> has no local changes
2026-02-05 00:43:40,681 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:40,687 [ scc.git] DEBUG [detached HEAD 0570e94] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:40,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:40,687 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:41,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-02-05 00:43:41,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-02-05 00:43:42,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-02-05 00:43:42,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-02-05 00:43:43,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-02-05 00:43:43,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:44,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:44,303 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:44,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-05 00:43:44,304 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:44,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:44,306 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:44,308 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:44,308 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:44,311 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:44,318 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-02-05 00:43:44,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-02-05 00:43:45,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-02-05 00:43:46,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-02-05 00:43:46,455 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:46,455 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:46,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:46,458 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:46,496 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:46,496 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:46,498 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:46,536 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:46,539 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f63984f2190> has no local changes
2026-02-05 00:43:46,539 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:46,545 [ scc.git] DEBUG [detached HEAD b6b96b0] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:46,545 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:46,545 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:47,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-02-05 00:43:47,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-02-05 00:43:47,500 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:43:48,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-05 00:43:48,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:49,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:49,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-05 00:43:50,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:50,022 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:43:50,022 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:50,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-05 00:43:50,023 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:50,023 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:50,025 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:50,028 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:50,028 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:50,030 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:50,033 [ scc.git] DEBUG Already up to date.
2026-02-05 00:43:50,033 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-05 00:43:50,311 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-02-05 00:43:50,311 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-05 00:43:50,315 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:50,315 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:50,315 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:50,317 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-05 00:43:50,319 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:50,322 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-05 00:43:50,328 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:50,331 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:43:50,331 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:43:50,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:50,475 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:50,513 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:50,513 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:50,515 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:50,551 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:50,554 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f639855cd10> has no local changes
2026-02-05 00:43:50,554 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:50,560 [ scc.git] DEBUG [detached HEAD 6d7067a] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:50,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:50,560 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:50,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-02-05 00:43:51,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-02-05 00:43:51,492 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:43:52,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-05 00:43:52,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:53,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:53,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-05 00:43:54,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:54,028 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:43:54,028 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:43:54,028 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-05 00:43:54,028 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:54,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:54,031 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:43:54,033 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:43:54,033 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:43:54,036 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:43:54,042 [ scc.git] DEBUG Updating deab817..160d894
2026-02-05 00:43:54,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-02-05 00:43:54,881 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-05 00:43:55,158 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-02-05 00:43:55,158 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-05 00:43:55,162 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:43:55,162 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:55,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:55,164 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-05 00:43:55,167 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:55,169 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-05 00:43:55,175 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:43:55,178 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:43:55,178 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:43:55,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:43:55,340 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:43:55,379 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:43:55,379 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:43:55,381 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:43:55,418 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:43:55,421 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6398ef1310> has no local changes
2026-02-05 00:43:55,421 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:43:55,426 [ scc.git] DEBUG [detached HEAD ecc4469] merge master -Dorg -Ssuccess-only
2026-02-05 00:43:55,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:43:55,427 [ scc.git] INFO Overriding base-branch from master to main
2026-02-05 00:43:55,427 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:43:55,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-02-05 00:43:56,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-02-05 00:43:56,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-02-05 00:43:57,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-05 00:43:57,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:43:58,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:43:59,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-05 00:43:59,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:43:59,477 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-02-05 00:43:59,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-02-05 00:44:00,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-02-05 00:44:00,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-02-05 00:44:01,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-05 00:44:01,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:44:02,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-05 00:44:02,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:44:02,958 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-05 00:44:02,958 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:44:02,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-05 00:44:02,959 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:02,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:02,961 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-02-05 00:44:02,964 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:44:02,964 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-02-05 00:44:02,966 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-02-05 00:44:02,973 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-02-05 00:44:03,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-02-05 00:44:04,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-02-05 00:44:04,414 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-02-05 00:44:04,681 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-05 00:44:04,682 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-02-05 00:44:04,686 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-02-05 00:44:04,943 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-05 00:44:04,943 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-02-05 00:44:04,946 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:44:04,947 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:04,947 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:04,949 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-05 00:44:04,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:04,954 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-05 00:44:04,961 [ scc.git] DEBUG Auto-merging README.rst
2026-02-05 00:44:04,961 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-02-05 00:44:04,961 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-02-05 00:44:04,961 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-05 00:44:04,961 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-05 00:44:04,962 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-05 00:44:04,964 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-05 00:44:04,968 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-02-05 00:44:05,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:05,134 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-05 00:44:05,137 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-05 00:44:05,140 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#44](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-02-05 00:44:05,142 [ scc.config] DEBUG Found github.token
2026-02-05 00:44:05,142 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-02-05 00:44:05,142 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-05 00:44:05,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:05,146 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-05 00:44:05,154 [ scc.git] DEBUG Auto-merging README.rst
2026-02-05 00:44:05,154 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-05 00:44:05,154 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:44:05,157 [ scc.git] DEBUG README.rst | 3 +
2026-02-05 00:44:05,158 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-02-05 00:44:05,158 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-02-05 00:44:05,158 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-02-05 00:44:05,158 [ scc.git] DEBUG setup.py | 5 +-
2026-02-05 00:44:05,158 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-02-05 00:44:05,158 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-02-05 00:44:05,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:05,531 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:44:05,570 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:05,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:05,572 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:44:05,609 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:44:05,613 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6398533710> has no local changes
2026-02-05 00:44:05,613 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:44:05,618 [ scc.git] DEBUG [detached HEAD 6053770] merge master -Dorg -Ssuccess-only
2026-02-05 00:44:05,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:05,619 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:44:06,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-02-05 00:44:06,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-02-05 00:44:06,634 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:44:07,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-05 00:44:07,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:44:08,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:44:09,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-05 00:44:09,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:44:09,582 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:09,582 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:44:09,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-05 00:44:09,582 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:09,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:09,585 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:44:09,587 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:44:09,587 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:44:09,590 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:44:09,592 [ scc.git] DEBUG Already up to date.
2026-02-05 00:44:09,592 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-02-05 00:44:09,894 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-02-05 00:44:09,894 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-02-05 00:44:09,898 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:44:09,898 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:09,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:09,900 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-05 00:44:09,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:09,905 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-05 00:44:09,911 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:44:09,913 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:44:09,913 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:44:10,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:10,066 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:44:10,104 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:10,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:10,106 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:44:10,143 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:44:10,146 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f63984bfc10> has no local changes
2026-02-05 00:44:10,146 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:44:10,152 [ scc.git] DEBUG [detached HEAD 8572e5d] merge master -Dorg -Ssuccess-only
2026-02-05 00:44:10,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:10,152 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:44:10,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-02-05 00:44:11,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-02-05 00:44:11,090 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-05 00:44:11,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-05 00:44:12,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-05 00:44:12,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-05 00:44:13,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-05 00:44:13,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-02-05 00:44:13,936 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:13,936 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:44:13,936 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-05 00:44:13,936 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:13,936 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:13,939 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:44:13,941 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:44:13,941 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:44:13,944 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:44:13,946 [ scc.git] DEBUG Already up to date.
2026-02-05 00:44:13,946 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-02-05 00:44:14,217 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-02-05 00:44:14,217 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-02-05 00:44:14,221 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:44:14,221 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:14,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:14,224 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-05 00:44:14,226 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:14,228 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-05 00:44:14,234 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-05 00:44:14,237 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-05 00:44:14,237 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-05 00:44:14,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:14,382 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:44:14,419 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:14,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:14,421 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:44:14,458 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:44:14,461 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f63985706d0> has no local changes
2026-02-05 00:44:14,462 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:44:14,467 [ scc.git] DEBUG [detached HEAD 8c4e31b] merge master -Dorg -Ssuccess-only
2026-02-05 00:44:14,468 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:14,468 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:44:14,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-02-05 00:44:14,798 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:44:14,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-05 00:44:14,798 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:14,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:14,800 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-05 00:44:14,803 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:44:14,803 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-05 00:44:14,805 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-05 00:44:14,808 [ scc.git] DEBUG Already up to date.
2026-02-05 00:44:14,808 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:44:14,808 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:14,808 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:14,810 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:44:14,847 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:14,847 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:14,850 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:44:14,886 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:44:14,889 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f63985a7990> has no local changes
2026-02-05 00:44:14,889 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:44:14,895 [ scc.git] DEBUG [detached HEAD 91ed95e] merge master -Dorg -Ssuccess-only
2026-02-05 00:44:14,895 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:14,895 [ scc.git] INFO Overriding base-branch from master to develop
2026-02-05 00:44:14,895 [ scc.repo] DEBUG ## PRs found:
2026-02-05 00:44:15,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-02-05 00:44:15,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-02-05 00:44:16,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-02-05 00:44:16,352 [ scc.repo] DEBUG ## Branches found:
2026-02-05 00:44:16,352 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-05 00:44:16,352 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:16,352 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:16,354 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-02-05 00:44:16,357 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-05 00:44:16,357 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-02-05 00:44:16,360 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-02-05 00:44:16,371 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-02-05 00:44:17,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-02-05 00:44:17,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-02-05 00:44:18,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-02-05 00:44:19,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-02-05 00:44:19,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-02-05 00:44:20,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-02-05 00:44:21,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-02-05 00:44:21,424 [ scc.git] DEBUG ## Unique users: []
2026-02-05 00:44:21,424 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:21,424 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:21,426 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-05 00:44:21,465 [ scc.git] DEBUG Get sha1 of %s
2026-02-05 00:44:21,465 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-05 00:44:21,467 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:44:21,503 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:44:21,507 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f63983cb3d0> has no local changes
2026-02-05 00:44:21,507 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:44:21,513 [ scc.git] DEBUG [detached HEAD 12f0fe1] merge master -Dorg -Ssuccess-only
2026-02-05 00:44:21,513 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:21,513 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-05 00:44:21,583 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-02-05 00:44:21,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:21,822 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-02-05 00:44:21,824 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-02-05 00:44:22,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:22,276 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-02-05 00:44:22,278 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-02-05 00:44:22,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:22,670 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-02-05 00:44:22,672 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-02-05 00:44:23,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:23,068 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-02-05 00:44:23,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:23,623 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-02-05 00:44:23,625 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-02-05 00:44:24,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:24,038 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-02-05 00:44:24,040 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-02-05 00:44:24,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:24,432 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-02-05 00:44:24,434 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-02-05 00:44:24,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:24,834 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-02-05 00:44:24,836 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-02-05 00:44:25,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:25,227 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-02-05 00:44:25,229 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-02-05 00:44:25,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:25,620 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-02-05 00:44:25,622 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-02-05 00:44:26,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:26,035 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-02-05 00:44:26,037 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-02-05 00:44:26,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:26,441 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-02-05 00:44:26,443 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-02-05 00:44:26,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:26,840 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-02-05 00:44:27,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:27,251 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-02-05 00:44:27,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:27,648 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-02-05 00:44:27,650 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-02-05 00:44:28,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:28,057 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-02-05 00:44:28,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:28,457 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-02-05 00:44:28,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:28,857 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-02-05 00:44:28,859 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-02-05 00:44:29,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:29,281 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-02-05 00:44:29,283 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-02-05 00:44:29,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:29,690 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-02-05 00:44:29,692 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-02-05 00:44:30,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:30,114 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-02-05 00:44:30,116 [ scc.config] DEBUG Found submodule.scripts.url
2026-02-05 00:44:30,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-05 00:44:30,522 [ scc.config] DEBUG Found submodule.scripts.branch
2026-02-05 00:44:30,522 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-05 00:44:30,599 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6398ed4b10> has local changes
2026-02-05 00:44:30,599 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..10df940
Previously merged:
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 192 jburel 'Set Omero pixel size'
Repository: ome/omero-figure
Excluded PRs:
- PR 666 will-moore 'Standalone app' (stage: draft)
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..b79d638b
Previously merged:
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 662 will-moore 'Export script runnable without OMERO'
- PR 663 will-moore 'Zarr'
Conflicting PRs (not included):
- PR 664 Nirkan 'Handle many channels '
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#44 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/44/)'
2026-02-05 00:44:30,610 [ scc.git] DEBUG [detached HEAD 823a484] merge master -Dorg -Ssuccess-only
2026-02-05 00:44:30,610 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-02-05 00:44:30,610 [ scc.merge] INFO Repository: ome/omero-plugins
2026-02-05 00:44:30,610 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,610 [ scc.merge] INFO
2026-02-05 00:44:30,610 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,610 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-02-05 00:44:30,610 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-02-05 00:44:30,610 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-02-05 00:44:30,610 [ scc.merge] INFO
2026-02-05 00:44:30,610 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-02-05 00:44:30,610 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,610 [ scc.merge] INFO
2026-02-05 00:44:30,610 [ scc.merge] INFO
2026-02-05 00:44:30,610 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-02-05 00:44:30,610 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,610 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-02-05 00:44:30,611 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,611 [ scc.merge] INFO
2026-02-05 00:44:30,611 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,611 [ scc.merge] INFO
2026-02-05 00:44:30,611 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-02-05 00:44:30,611 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-02-05 00:44:30,611 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-02-05 00:44:30,611 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-02-05 00:44:30,611 [ scc.merge] INFO
2026-02-05 00:44:30,611 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-02-05 00:44:30,611 [ scc.merge] INFO
2026-02-05 00:44:30,611 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-02-05 00:44:30,611 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-02-05 00:44:30,611 [ scc.merge] INFO Updating 11d3587..10df940
2026-02-05 00:44:30,611 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:44:30,611 [ scc.merge] INFO
2026-02-05 00:44:30,611 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2026-02-05 00:44:30,611 [ scc.merge] INFO
2026-02-05 00:44:30,611 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-02-05 00:44:30,611 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-02-05 00:44:30,612 [ scc.merge] INFO
2026-02-05 00:44:30,612 [ scc.merge] INFO Repository: ome/omero-figure
2026-02-05 00:44:30,612 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' (stage: draft)
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-02-05 00:44:30,612 [ scc.merge] INFO Updating 9cc36cde..b79d638b
2026-02-05 00:44:30,612 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:44:30,612 [ scc.merge] INFO
2026-02-05 00:44:30,612 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 662 will-moore 'Export script runnable without OMERO'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-02-05 00:44:30,612 [ scc.merge] INFO
2026-02-05 00:44:30,612 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-02-05 00:44:30,612 [ scc.merge] INFO
2026-02-05 00:44:30,612 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-02-05 00:44:30,612 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,612 [ scc.merge] INFO
2026-02-05 00:44:30,612 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-02-05 00:44:30,612 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,612 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Repository: ome/omero-gallery
2026-02-05 00:44:30,613 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-02-05 00:44:30,613 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-02-05 00:44:30,613 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-02-05 00:44:30,613 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Repository: ome/omero-mapr
2026-02-05 00:44:30,613 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-02-05 00:44:30,613 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:44:30,613 [ scc.merge] INFO
2026-02-05 00:44:30,613 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,613 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Repository: ome/omero-metadata
2026-02-05 00:44:30,614 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-02-05 00:44:30,614 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Repository: ome/omero-parade
2026-02-05 00:44:30,614 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-02-05 00:44:30,614 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-02-05 00:44:30,614 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Repository: ome/omero-rois
2026-02-05 00:44:30,614 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-05 00:44:30,614 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Repository: ome/omero-signup
2026-02-05 00:44:30,614 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,614 [ scc.merge] INFO
2026-02-05 00:44:30,614 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,614 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-02-05 00:44:30,615 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-02-05 00:44:30,615 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-02-05 00:44:30,615 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Repository: ome/omero-upload
2026-02-05 00:44:30,615 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-02-05 00:44:30,615 [ scc.merge] INFO Updating deab817..160d894
2026-02-05 00:44:30,615 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-02-05 00:44:30,615 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-02-05 00:44:30,615 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-02-05 00:44:30,615 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-02-05 00:44:30,615 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,615 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,615 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-02-05 00:44:30,615 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,615 [ scc.merge] INFO
2026-02-05 00:44:30,616 [ scc.merge] INFO Merged PRs:
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,616 [ scc.merge] INFO
2026-02-05 00:44:30,616 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-02-05 00:44:30,616 [ scc.merge] INFO Already up to date.
2026-02-05 00:44:30,616 [ scc.merge] INFO
2026-02-05 00:44:30,616 [ scc.merge] INFO
2026-02-05 00:44:30,616 [ scc.merge] INFO Repository: ome/scripts
2026-02-05 00:44:30,616 [ scc.merge] INFO Excluded PRs:
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-02-05 00:44:30,616 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-02-05 00:44:30,616 [ scc.merge] INFO Previously merged:
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-02-05 00:44:30,616 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-02-05 00:44:30,616 [ scc.merge] INFO
2026-02-05 00:44:30,616 [ scc.merge] INFO
2026-02-05 00:44:30,616 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-02-05 00:44:30,616 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-02-05 00:44:30,620 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-02-05 00:44:30,623 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-02-05 00:44:30,625 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-02-05 00:44:30,627 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-02-05 00:44:30,629 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,631 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,631 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-02-05 00:44:30,631 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,633 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,633 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-02-05 00:44:30,633 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,635 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,635 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-02-05 00:44:30,636 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-05 00:44:30,638 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-05 00:44:30,640 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-05 00:44:30,642 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-05 00:44:30,644 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-05 00:44:30,646 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,649 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-05 00:44:30,649 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-05 00:44:30,651 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,653 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,653 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-05 00:44:30,653 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-05 00:44:30,655 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,657 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,657 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-05 00:44:30,657 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,659 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,659 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-05 00:44:30,659 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,661 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,661 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-05 00:44:30,661 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-05 00:44:30,663 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,665 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-05 00:44:30,665 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-05 00:44:30,665 [ scc.git] DEBUG Calling 'git remote'
2026-02-05 00:44:30,667 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 89fc228] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 5f7a291] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-02-05 00:45:16,889 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-02-05 00:45:26,499 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-02-05 00:45:28,963 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-05 00:45:33,797 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-05 00:46:14,213 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
