Started by upstream project "Trigger" build number 25 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 8 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.3-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.3 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.11.12-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.3-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2025.11.12-py3-none-any.whl (159 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.11.12 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.3 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.2 requests-2.32.5 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-01-04 00:37:10,206 [ scc.config] DEBUG Found github.token 2026-01-04 00:37:10,207 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-01-04 00:37:10,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:37:10,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:37:11,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-01-04 00:37:11,182 [ scc.gh] DEBUG 4998 remaining from 5000 (Reset at 01:01 2026-01-04 00:37:11,183 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:11,185 [ scc.git] DEBUG Check current status 2026-01-04 00:37:11,185 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:11,187 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-01-04 00:37:11,188 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:11,232 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-04 00:37:11,235 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-04 00:37:11,238 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-01-04 00:37:11,241 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-01-04 00:37:11,244 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-01-04 00:37:11,247 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-04 00:37:11,249 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-04 00:37:11,252 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-01-04 00:37:11,255 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-04 00:37:11,258 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-01-04 00:37:11,260 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-04 00:37:11,263 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-04 00:37:11,266 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-04 00:37:11,269 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-04 00:37:11,272 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-01-04 00:37:11,275 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-04 00:37:11,277 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-01-04 00:37:11,280 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-01-04 00:37:11,282 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-04 00:37:11,285 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-04 00:37:11,288 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-04 00:37:11,291 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-01-04 00:37:11,294 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:11,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-01-04 00:37:12,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:12,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:13,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:13,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:13,453 [ scc.git] DEBUG Resetting... 2026-01-04 00:37:13,453 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-01-04 00:37:13,460 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-01-04 00:37:13,461 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-01-04 00:37:13,558 [ scc.git] DEBUG Check current status 2026-01-04 00:37:13,558 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:13,561 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-01-04 00:37:13,561 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:13,604 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-04 00:37:13,607 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-04 00:37:13,609 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-01-04 00:37:13,612 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-01-04 00:37:13,615 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-01-04 00:37:13,618 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-04 00:37:13,620 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-04 00:37:13,623 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-01-04 00:37:13,626 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-04 00:37:13,629 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-01-04 00:37:13,631 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-04 00:37:13,634 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-04 00:37:13,637 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-04 00:37:13,640 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-04 00:37:13,643 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-01-04 00:37:13,645 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-04 00:37:13,647 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-01-04 00:37:13,650 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-01-04 00:37:13,652 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-04 00:37:13,655 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-04 00:37:13,657 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-04 00:37:13,660 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-01-04 00:37:13,661 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-01-04 00:37:13,661 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-01-04 00:37:13,661 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-01-04 00:37:13,661 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-01-04 00:37:13,661 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-01-04 00:37:13,661 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:37:13,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-01-04 00:37:14,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-01-04 00:37:14,582 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:37:14,582 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-04 00:37:15,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-01-04 00:37:15,076 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:37:15,076 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-04 00:37:15,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-01-04 00:37:15,552 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:37:15,552 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-04 00:37:15,552 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:37:15,552 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:37:15,552 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:37:15,554 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:37:15,556 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:37:15,557 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:37:15,559 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:37:15,562 [ scc.git] DEBUG Already up to date. 2026-01-04 00:37:15,562 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-01-04 00:37:15,827 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-04 00:37:15,827 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-01-04 00:37:15,831 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-01-04 00:37:16,084 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-04 00:37:16,084 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-01-04 00:37:16,088 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-01-04 00:37:16,345 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-04 00:37:16,345 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-01-04 00:37:16,349 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:37:16,349 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:37:16,349 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:37:16,351 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-04 00:37:16,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:37:16,355 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-04 00:37:16,370 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:37:16,373 [ scc.git] DEBUG scripts | 2 +- 2026-01-04 00:37:16,373 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:37:16,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:37:16,518 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-04 00:37:16,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:37:16,522 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-04 00:37:16,537 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:37:16,539 [ scc.git] DEBUG omero-figure | 2 +- 2026-01-04 00:37:16,539 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:37:16,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:37:16,911 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-04 00:37:16,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:37:16,915 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-04 00:37:16,929 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:37:16,932 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-01-04 00:37:16,932 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:37:17,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:37:17,300 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:37:17,356 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-01-04 00:37:17,379 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-01-04 00:37:17,392 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-01-04 00:37:17,393 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:37:17,393 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:37:17,395 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:37:17,470 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f108d77cf50> has no local changes 2026-01-04 00:37:17,470 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:37:17,539 [ scc.git] DEBUG [detached HEAD d1ea5ad] merge master -Dorg -Snone 2026-01-04 00:37:17,539 [ scc.merge] INFO Repository: ome/omero-plugins 2026-01-04 00:37:17,539 [ scc.merge] INFO Already up to date. 2026-01-04 00:37:17,539 [ scc.merge] INFO 2026-01-04 00:37:17,539 [ scc.merge] INFO Merged PRs: 2026-01-04 00:37:17,539 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-04 00:37:17,539 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-04 00:37:17,539 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-04 00:37:17,539 [ scc.merge] INFO 2026-01-04 00:37:17,539 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-01-04 00:37:17,540 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out '37ea7000309b4f8b87c5122c138fb59b17ecf86b' Submodule path 'omero-figure': checked out '88b01ef56d2140b716e7f7022a5e7bd3d4b2c654' Submodule path 'omero-iviewer': checked out '5e2de43ad401fb00690a79644056e0ac15fabfd5' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '18a9a752ca35a4bbe40246e3c225c0fb224ce883' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-01-04 00:37:24,152 [ scc.config] DEBUG Found github.token 2026-01-04 00:37:24,154 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-01-04 00:37:24,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:37:24,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:37:25,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-01-04 00:37:25,288 [ scc.gh] DEBUG 4984 remaining from 5000 (Reset at 01:01 2026-01-04 00:37:25,288 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:25,291 [ scc.git] DEBUG Check current status 2026-01-04 00:37:25,291 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:25,293 [ scc.git] DEBUG d1ea5ad merge master -Dorg -Snone 2026-01-04 00:37:25,293 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:25,338 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-04 00:37:25,341 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-04 00:37:25,344 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-01-04 00:37:25,347 [ scc.git] DEBUG +37ea7000309b4f8b87c5122c138fb59b17ecf86b omero-cli-zarr (v0.7.0rc1-2-g37ea700) 2026-01-04 00:37:25,356 [ scc.git] DEBUG +88b01ef56d2140b716e7f7022a5e7bd3d4b2c654 omero-figure (v7.2.1-347-g88b01ef5) 2026-01-04 00:37:25,359 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-04 00:37:25,361 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-04 00:37:25,364 [ scc.git] DEBUG +5e2de43ad401fb00690a79644056e0ac15fabfd5 omero-iviewer (v0.16.0-20-g5e2de43) 2026-01-04 00:37:25,367 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-04 00:37:25,370 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2026-01-04 00:37:25,373 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-04 00:37:25,376 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-04 00:37:25,379 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-04 00:37:25,382 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-04 00:37:25,385 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-01-04 00:37:25,387 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-04 00:37:25,390 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-01-04 00:37:25,392 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-01-04 00:37:25,395 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-04 00:37:25,398 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-04 00:37:25,400 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-04 00:37:25,405 [ scc.git] DEBUG +18a9a752ca35a4bbe40246e3c225c0fb224ce883 scripts (v5.9.1-17-g18a9a75) 2026-01-04 00:37:25,407 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:25,408 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-01-04 00:37:25,409 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-01-04 00:37:25,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-01-04 00:37:26,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:26,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:27,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:27,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:27,725 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:27,796 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-01-04 00:37:27,796 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:27,798 [ scc.git] DEBUG Check current status 2026-01-04 00:37:27,798 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:27,800 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-01-04 00:37:27,801 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:27,838 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:28,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-01-04 00:37:28,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:29,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:29,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:30,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:30,143 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:30,180 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:30,181 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-01-04 00:37:30,181 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:30,183 [ scc.git] DEBUG Check current status 2026-01-04 00:37:30,183 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:30,185 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-01-04 00:37:30,185 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:30,224 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:30,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-01-04 00:37:31,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:31,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:31,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:32,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:32,391 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:32,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:32,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-01-04 00:37:32,428 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:32,430 [ scc.git] DEBUG Check current status 2026-01-04 00:37:32,430 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:32,433 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-01-04 00:37:32,433 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:32,471 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:32,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-01-04 00:37:33,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:33,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:34,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:34,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:34,608 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:34,645 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:34,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-01-04 00:37:34,646 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:34,648 [ scc.git] DEBUG Check current status 2026-01-04 00:37:34,648 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:34,650 [ scc.git] DEBUG 37ea700 Bump version: 0.7.0rc1 → 0.7.1.dev0 2026-01-04 00:37:34,650 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:34,688 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:35,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-01-04 00:37:35,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:36,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:36,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:36,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:36,997 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:37,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:37,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-01-04 00:37:37,034 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:37,036 [ scc.git] DEBUG Check current status 2026-01-04 00:37:37,036 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:37,038 [ scc.git] DEBUG 88b01ef5 Merge pull request #637 from Rdornier/fix-scalebar-position 2026-01-04 00:37:37,038 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:37,076 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:37,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-01-04 00:37:38,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:38,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:38,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:39,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:39,436 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:39,472 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:39,473 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-01-04 00:37:39,473 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:39,475 [ scc.git] DEBUG Check current status 2026-01-04 00:37:39,475 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:39,477 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-01-04 00:37:39,477 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:39,515 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:39,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-01-04 00:37:40,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:40,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:41,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:41,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:41,820 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:41,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:41,857 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-01-04 00:37:41,857 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:41,859 [ scc.git] DEBUG Check current status 2026-01-04 00:37:41,859 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:41,861 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-01-04 00:37:41,862 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:41,899 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:42,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-01-04 00:37:42,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:43,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:43,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:44,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:44,175 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:44,212 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:44,213 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-01-04 00:37:44,213 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:44,215 [ scc.git] DEBUG Check current status 2026-01-04 00:37:44,215 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:44,217 [ scc.git] DEBUG 5e2de43 Merge pull request #510 from joshmoore/issue-509 2026-01-04 00:37:44,218 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:44,255 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:44,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-01-04 00:37:45,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:45,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:46,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:46,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:46,436 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:46,474 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:46,475 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-01-04 00:37:46,475 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:46,477 [ scc.git] DEBUG Check current status 2026-01-04 00:37:46,477 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:46,479 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-01-04 00:37:46,479 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:46,518 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:46,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-01-04 00:37:47,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:47,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:48,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:48,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:48,602 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:48,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:48,639 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-01-04 00:37:48,639 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:48,641 [ scc.git] DEBUG Check current status 2026-01-04 00:37:48,641 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:48,643 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-01-04 00:37:48,644 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:48,683 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:49,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-01-04 00:37:49,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:50,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:50,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:51,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:51,104 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:51,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:51,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-01-04 00:37:51,142 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:51,144 [ scc.git] DEBUG Check current status 2026-01-04 00:37:51,144 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:51,146 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-01-04 00:37:51,146 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:51,184 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:51,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-01-04 00:37:52,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:52,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:52,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:53,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:53,349 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:53,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:53,387 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-01-04 00:37:53,387 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:53,389 [ scc.git] DEBUG Check current status 2026-01-04 00:37:53,389 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:53,391 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-01-04 00:37:53,391 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:53,429 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:53,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-01-04 00:37:54,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:54,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:55,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:55,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:55,635 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:55,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:55,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-01-04 00:37:55,674 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:55,676 [ scc.git] DEBUG Check current status 2026-01-04 00:37:55,676 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:55,678 [ scc.git] DEBUG bdfeb5e bump sphinx version 2026-01-04 00:37:55,679 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:55,718 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:56,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-01-04 00:37:56,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:57,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:57,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:37:58,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:37:58,013 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:37:58,051 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:37:58,052 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-01-04 00:37:58,052 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:37:58,054 [ scc.git] DEBUG Check current status 2026-01-04 00:37:58,054 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:37:58,056 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-01-04 00:37:58,056 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:37:58,096 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:37:58,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-01-04 00:37:58,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:37:59,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:37:59,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:00,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:00,244 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:00,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:00,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-01-04 00:38:00,283 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:00,285 [ scc.git] DEBUG Check current status 2026-01-04 00:38:00,285 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:00,287 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-01-04 00:38:00,288 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:00,325 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:00,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-01-04 00:38:00,665 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-01-04 00:38:00,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-01-04 00:38:01,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:01,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:02,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:02,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:02,716 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:02,754 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:02,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-01-04 00:38:02,755 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:02,757 [ scc.git] DEBUG Check current status 2026-01-04 00:38:02,757 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:02,759 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-01-04 00:38:02,760 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:02,798 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:03,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-01-04 00:38:03,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:04,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:04,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:05,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:05,041 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:05,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:05,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-01-04 00:38:05,078 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:05,081 [ scc.git] DEBUG Check current status 2026-01-04 00:38:05,081 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:05,083 [ scc.git] DEBUG 160d894 Fix display of code 2026-01-04 00:38:05,083 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:05,121 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:05,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-01-04 00:38:06,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:06,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:07,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:07,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:07,796 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:07,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:07,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-01-04 00:38:07,834 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:07,836 [ scc.git] DEBUG Check current status 2026-01-04 00:38:07,836 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:07,839 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-01-04 00:38:07,839 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:07,876 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:07,876 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-01-04 00:38:08,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-01-04 00:38:08,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:09,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:09,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:10,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:10,055 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:10,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:10,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-01-04 00:38:10,092 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:10,094 [ scc.git] DEBUG Check current status 2026-01-04 00:38:10,094 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:10,096 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-01-04 00:38:10,096 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:10,134 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:10,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-01-04 00:38:10,494 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-01-04 00:38:10,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-01-04 00:38:11,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:11,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:12,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:12,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:12,508 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:12,545 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:12,545 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-01-04 00:38:12,545 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:12,547 [ scc.git] DEBUG Check current status 2026-01-04 00:38:12,547 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:12,550 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-01-04 00:38:12,550 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:12,588 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:12,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-01-04 00:38:12,925 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-01-04 00:38:13,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-01-04 00:38:13,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:14,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:14,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:14,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:14,914 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:14,951 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:14,951 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-01-04 00:38:14,951 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:14,953 [ scc.git] DEBUG Check current status 2026-01-04 00:38:14,953 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:14,956 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-01-04 00:38:14,956 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:14,993 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:15,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-01-04 00:38:15,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:16,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:16,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:17,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:17,238 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:17,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:17,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-01-04 00:38:17,275 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-01-04 00:38:17,277 [ scc.git] DEBUG Check current status 2026-01-04 00:38:17,277 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:17,279 [ scc.git] DEBUG 18a9a75 Merge pull request #229 from Rdornier/split-view-user-label 2026-01-04 00:38:17,279 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:17,316 [ scc.config] DEBUG Found remote.origin.url 2026-01-04 00:38:17,317 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-01-04 00:38:17,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-04 00:38:17,665 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-04 00:38:17,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-01-04 00:38:18,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-01-04 00:38:18,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-01-04 00:38:19,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-01-04 00:38:19,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-01-04 00:38:19,688 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:19,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:19,724 [ scc.git] DEBUG Resetting... 2026-01-04 00:38:19,724 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-01-04 00:38:19,732 [ scc.git] DEBUG HEAD is now at d1ea5ad merge master -Dorg -Snone 2026-01-04 00:38:19,732 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-01-04 00:38:19,783 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-01-04 00:38:19,797 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-01-04 00:38:19,824 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-01-04 00:38:19,841 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-01-04 00:38:19,855 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-01-04 00:38:19,877 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-01-04 00:38:19,891 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-01-04 00:38:19,901 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-01-04 00:38:19,924 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-01-04 00:38:19,927 [ scc.git] DEBUG Check current status 2026-01-04 00:38:19,927 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-01-04 00:38:19,929 [ scc.git] DEBUG d1ea5ad merge master -Dorg -Snone 2026-01-04 00:38:19,929 [ scc.git] DEBUG Calling 'git submodule status' 2026-01-04 00:38:19,973 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-01-04 00:38:19,975 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-01-04 00:38:19,978 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-01-04 00:38:19,981 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-01-04 00:38:19,984 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-01-04 00:38:19,986 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-01-04 00:38:19,989 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-01-04 00:38:19,992 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2026-01-04 00:38:19,994 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-01-04 00:38:19,997 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-01-04 00:38:20,000 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-01-04 00:38:20,002 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-01-04 00:38:20,005 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-01-04 00:38:20,008 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-01-04 00:38:20,011 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-01-04 00:38:20,014 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-01-04 00:38:20,016 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-01-04 00:38:20,018 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-01-04 00:38:20,021 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-01-04 00:38:20,023 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-01-04 00:38:20,026 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-01-04 00:38:20,029 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-01-04 00:38:20,030 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-01-04 00:38:20,030 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-01-04 00:38:20,030 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-01-04 00:38:20,030 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-01-04 00:38:20,030 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-01-04 00:38:20,030 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-01-04 00:38:20,030 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:38:20,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-01-04 00:38:21,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-01-04 00:38:21,070 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:38:21,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-01-04 00:38:22,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:22,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-01-04 00:38:22,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:38:22,913 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-04 00:38:23,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-01-04 00:38:23,551 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:38:24,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-01-04 00:38:24,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:25,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-01-04 00:38:25,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:38:25,473 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-04 00:38:25,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-01-04 00:38:25,965 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:38:26,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-01-04 00:38:26,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:27,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-01-04 00:38:27,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:38:27,959 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-04 00:38:27,959 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:38:27,959 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:27,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:27,961 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:38:27,964 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:38:27,964 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:38:27,966 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:38:27,969 [ scc.git] DEBUG Already up to date. 2026-01-04 00:38:27,969 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-01-04 00:38:28,259 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-04 00:38:28,259 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-01-04 00:38:28,264 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-01-04 00:38:28,516 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-04 00:38:28,516 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-01-04 00:38:28,520 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-01-04 00:38:28,770 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-01-04 00:38:28,770 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-01-04 00:38:28,774 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:38:28,774 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:28,774 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:28,776 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-04 00:38:28,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:28,780 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-01-04 00:38:28,783 [ scc.git] DEBUG Already up to date. 2026-01-04 00:38:28,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:38:28,924 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-04 00:38:28,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:28,928 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-01-04 00:38:28,931 [ scc.git] DEBUG Already up to date. 2026-01-04 00:38:29,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:38:29,330 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-04 00:38:29,332 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:29,334 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-01-04 00:38:29,336 [ scc.git] DEBUG Already up to date. 2026-01-04 00:38:29,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:38:29,726 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:38:29,773 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:29,774 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:29,776 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:38:30,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-01-04 00:38:30,175 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:38:30,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-01-04 00:38:30,175 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:30,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:30,177 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:38:30,179 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:38:30,179 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:38:30,182 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:38:30,185 [ scc.git] DEBUG Already up to date. 2026-01-04 00:38:30,185 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:38:30,185 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:30,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:30,187 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:38:30,224 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:30,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:30,226 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:30,262 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:38:30,265 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e12c7d0> has no local changes 2026-01-04 00:38:30,265 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:38:30,271 [ scc.git] DEBUG [detached HEAD 5d7936b] merge master -Dorg -Ssuccess-only 2026-01-04 00:38:30,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:30,271 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:38:30,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-01-04 00:38:31,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-01-04 00:38:31,248 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:38:31,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-01-04 00:38:32,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:32,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:38:33,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-01-04 00:38:33,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:38:33,694 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:38:34,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-01-04 00:38:34,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-01-04 00:38:34,687 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:38:34,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-01-04 00:38:34,687 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:34,687 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:34,690 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:38:34,692 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:38:34,692 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:38:34,695 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:38:34,698 [ scc.git] DEBUG Already up to date. 2026-01-04 00:38:34,698 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-01-04 00:38:34,962 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-01-04 00:38:34,963 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-01-04 00:38:34,966 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:38:34,966 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:34,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:34,969 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-01-04 00:38:34,971 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:34,973 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-01-04 00:38:34,979 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:38:34,982 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:38:34,982 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:38:35,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:38:35,126 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:38:35,162 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:35,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:35,164 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:35,199 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:38:35,203 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e11dbd0> has no local changes 2026-01-04 00:38:35,203 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:38:35,208 [ scc.git] DEBUG [detached HEAD 51192bc] merge master -Dorg -Ssuccess-only 2026-01-04 00:38:35,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:35,209 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:38:35,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-01-04 00:38:36,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-01-04 00:38:36,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-01-04 00:38:37,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-01-04 00:38:37,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:38,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:38:38,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-01-04 00:38:39,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:38:39,277 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-01-04 00:38:39,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-01-04 00:38:40,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-01-04 00:38:40,348 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:38:40,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-01-04 00:38:40,348 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:40,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:40,350 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:38:40,353 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:38:40,353 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:38:40,355 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:38:40,363 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-01-04 00:38:41,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-01-04 00:38:41,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-01-04 00:38:42,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-01-04 00:38:43,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-01-04 00:38:43,115 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-01-04 00:38:43,385 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-01-04 00:38:43,385 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-01-04 00:38:43,389 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:38:43,389 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:43,389 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:43,391 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-01-04 00:38:43,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:43,396 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-01-04 00:38:43,404 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-01-04 00:38:43,405 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:38:43,407 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-01-04 00:38:43,408 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-01-04 00:38:43,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:38:43,551 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:38:43,587 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:38:43,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:38:43,589 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:38:43,625 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:38:43,628 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e0fd350> has no local changes 2026-01-04 00:38:43,628 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:38:43,634 [ scc.git] DEBUG [detached HEAD 018c997] merge master -Dorg -Ssuccess-only 2026-01-04 00:38:43,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:38:43,634 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:38:44,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-01-04 00:38:44,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/186 HTTP/1.1" 200 None 2026-01-04 00:38:45,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2026-01-04 00:38:45,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:46,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:38:46,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2026-01-04 00:38:47,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2?per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:47,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2 HTTP/1.1" 200 None 2026-01-04 00:38:48,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2/status HTTP/1.1" 200 None 2026-01-04 00:38:48,164 [ scc.repo] DEBUG - PR 186 jburel 'Create release from tag' 2026-01-04 00:38:48,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None 2026-01-04 00:38:49,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None 2026-01-04 00:38:49,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-01-04 00:38:50,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:50,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:38:51,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-01-04 00:38:51,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:52,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-01-04 00:38:52,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/status HTTP/1.1" 200 None 2026-01-04 00:38:52,591 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-01-04 00:38:53,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None 2026-01-04 00:38:53,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None 2026-01-04 00:38:54,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2026-01-04 00:38:54,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:55,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:38:55,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2026-01-04 00:38:56,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/b1ec9c408dd417886a980e3368c0d82bfefe491d?per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:56,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2026-01-04 00:38:57,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/status HTTP/1.1" 200 None 2026-01-04 00:38:57,073 [ scc.repo] DEBUG - PR 181 will-moore 'Add labels support for import' 2026-01-04 00:38:57,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-01-04 00:38:58,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-01-04 00:38:58,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-01-04 00:38:59,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:38:59,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:00,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-01-04 00:39:00,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bb180dbb97ddc67cd2cf655d56058ba7da765769?per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:00,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2026-01-04 00:39:01,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/status HTTP/1.1" 200 None 2026-01-04 00:39:01,418 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-01-04 00:39:01,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-01-04 00:39:02,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-01-04 00:39:02,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-01-04 00:39:03,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:03,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:04,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-01-04 00:39:04,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:05,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-01-04 00:39:05,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-01-04 00:39:05,949 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-01-04 00:39:06,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2026-01-04 00:39:07,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2026-01-04 00:39:07,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f HTTP/1.1" 200 None 2026-01-04 00:39:08,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:08,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/34b94cfddfc81989bb9e3fcd54cfded2ae58cf9f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:09,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2026-01-04 00:39:09,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/169 HTTP/1.1" 200 None 2026-01-04 00:39:10,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2026-01-04 00:39:10,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2026-01-04 00:39:11,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-01-04 00:39:11,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-01-04 00:39:12,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-01-04 00:39:12,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-01-04 00:39:13,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-01-04 00:39:13,076 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:39:13,077 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-01-04 00:39:13,077 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:39:13,077 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:13,079 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:39:13,081 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:39:13,081 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:39:13,084 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:39:13,095 [ scc.git] DEBUG Updating 11d3587..37ea700 2026-01-04 00:39:13,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-01-04 00:39:14,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-01-04 00:39:15,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-01-04 00:39:15,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-01-04 00:39:16,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-01-04 00:39:17,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-01-04 00:39:17,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-01-04 00:39:18,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-01-04 00:39:18,675 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-01-04 00:39:18,944 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-04 00:39:18,944 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-01-04 00:39:18,948 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-01-04 00:39:19,211 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-04 00:39:19,211 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-01-04 00:39:19,215 [ scc.git] DEBUG Calling 'git fetch origin pull/181/head' 2026-01-04 00:39:19,467 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-04 00:39:19,467 [ scc.git] DEBUG * branch refs/pull/181/head -> FETCH_HEAD 2026-01-04 00:39:19,471 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head' 2026-01-04 00:39:19,725 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-04 00:39:19,725 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD 2026-01-04 00:39:19,730 [ scc.git] DEBUG Calling 'git fetch origin pull/186/head' 2026-01-04 00:39:19,980 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-01-04 00:39:19,980 [ scc.git] DEBUG * branch refs/pull/186/head -> FETCH_HEAD 2026-01-04 00:39:19,984 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:39:19,984 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:39:19,984 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:19,986 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-01-04 00:39:19,989 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:19,991 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-01-04 00:39:20,000 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:20,004 [ scc.git] DEBUG README.rst | 14 ++ 2026-01-04 00:39:20,004 [ scc.git] DEBUG src/omero_zarr/cli.py | 66 +++++---- 2026-01-04 00:39:20,004 [ scc.git] DEBUG src/omero_zarr/kvp_tables.py | 82 +++++++++++ 2026-01-04 00:39:20,004 [ scc.git] DEBUG src/omero_zarr/masks.py | 46 ++++-- 2026-01-04 00:39:20,004 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 51 +++++-- 2026-01-04 00:39:20,004 [ scc.git] DEBUG src/omero_zarr/util.py | 49 ++++++- 2026-01-04 00:39:20,004 [ scc.git] DEBUG test/integration/clitest/test_export.py | 251 +++++++++++++++++++++++--------- 2026-01-04 00:39:20,004 [ scc.git] DEBUG 7 files changed, 443 insertions(+), 116 deletions(-) 2026-01-04 00:39:20,004 [ scc.git] DEBUG create mode 100644 src/omero_zarr/kvp_tables.py 2026-01-04 00:39:20,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:20,159 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-01-04 00:39:20,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:20,164 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-01-04 00:39:20,173 [ scc.git] DEBUG Auto-merging CHANGELOG.md 2026-01-04 00:39:20,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in CHANGELOG.md 2026-01-04 00:39:20,173 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-01-04 00:39:20,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-01-04 00:39:20,173 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-01-04 00:39:20,173 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-01-04 00:39:20,173 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:39:20,173 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:39:20,176 [ scc.git] DEBUG Calling 'git reset --hard 607a361e30556f497446504299d31eb0aa0a7055' 2026-01-04 00:39:20,180 [ scc.git] DEBUG HEAD is now at 607a361 merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) 2026-01-04 00:39:20,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:20,551 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b bb180dbb97ddc67cd2cf655d56058ba7da765769' 2026-01-04 00:39:20,553 [ scc.git] DEBUG Calling 'git diff --name-only f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2026-01-04 00:39:20,556 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - CHANGELOG.md --conflicts 2026-01-04 00:39:20,558 [ scc.config] DEBUG Found github.token 2026-01-04 00:39:20,558 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-01-04 00:39:20,558 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b1ec9c408dd417886a980e3368c0d82bfefe491d' 2026-01-04 00:39:20,561 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:20,563 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 181 (Add labels support for import) b1ec9c408dd417886a980e3368c0d82bfefe491d' 2026-01-04 00:39:20,571 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-01-04 00:39:20,572 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:20,575 [ scc.git] DEBUG src/omero_zarr/cli.py | 4 + 2026-01-04 00:39:20,575 [ scc.git] DEBUG src/omero_zarr/import_labels.py | 196 ++++++++++++++++++++++++++++++++ 2026-01-04 00:39:20,575 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 7 ++ 2026-01-04 00:39:20,575 [ scc.git] DEBUG test/integration/clitest/test_import.py | 19 ++++ 2026-01-04 00:39:20,575 [ scc.git] DEBUG 4 files changed, 226 insertions(+) 2026-01-04 00:39:20,575 [ scc.git] DEBUG create mode 100644 src/omero_zarr/import_labels.py 2026-01-04 00:39:20,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:20,943 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-01-04 00:39:20,946 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:20,948 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-01-04 00:39:20,958 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-01-04 00:39:20,958 [ scc.git] DEBUG Auto-merging src/omero_zarr/import_labels.py 2026-01-04 00:39:20,958 [ scc.git] DEBUG CONFLICT (add/add): Merge conflict in src/omero_zarr/import_labels.py 2026-01-04 00:39:20,958 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2026-01-04 00:39:20,958 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:39:20,958 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:39:20,961 [ scc.git] DEBUG Calling 'git reset --hard c0daf169c62d3aee62cad92db2a49a14d32c00ff' 2026-01-04 00:39:20,965 [ scc.git] DEBUG HEAD is now at c0daf16 merge master -Dorg -Ssuccess-only: PR 181 (Add labels support for import) 2026-01-04 00:39:21,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:21,497 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-01-04 00:39:21,499 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2026-01-04 00:39:21,502 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #181 will-moore 'Add labels support for import' - src/omero_zarr/import_labels.py --conflicts 2026-01-04 00:39:21,504 [ scc.config] DEBUG Found github.token 2026-01-04 00:39:21,504 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts. 2026-01-04 00:39:21,504 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2' 2026-01-04 00:39:21,507 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:21,509 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 186 (Create release from tag) e5b25ec39ee9f3c165e28235cb28f3aa0c45d5e2' 2026-01-04 00:39:21,516 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:21,519 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 7 ++++++- 2026-01-04 00:39:21,519 [ scc.git] DEBUG CHANGELOG.md | 41 -------------------------------------- 2026-01-04 00:39:21,519 [ scc.git] DEBUG 2 files changed, 6 insertions(+), 42 deletions(-) 2026-01-04 00:39:21,519 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-01-04 00:39:21,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:21,906 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:39:21,943 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:39:21,943 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:21,945 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:39:21,980 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:39:21,984 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e14ba50> has no local changes 2026-01-04 00:39:21,984 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 181 will-moore 'Add labels support for import' - PR 186 jburel 'Create release from tag' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:39:21,989 [ scc.git] DEBUG [detached HEAD e0d2f42] merge master -Dorg -Ssuccess-only 2026-01-04 00:39:21,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:39:21,990 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:39:22,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-01-04 00:39:23,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/657 HTTP/1.1" 200 None 2026-01-04 00:39:23,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/657/comments HTTP/1.1" 200 None 2026-01-04 00:39:24,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb HTTP/1.1" 200 None 2026-01-04 00:39:24,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:25,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:25,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/edf6948abddd14cbbc1e13e1fb917c09d7c647fb HTTP/1.1" 200 None 2026-01-04 00:39:26,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/edf6948abddd14cbbc1e13e1fb917c09d7c647fb?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:39:26,242 [ scc.repo] DEBUG - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-01-04 00:39:26,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/656 HTTP/1.1" 200 None 2026-01-04 00:39:27,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2026-01-04 00:39:27,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:28,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:28,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c7d0108c6df89255b8875924ed52e264a72e581d HTTP/1.1" 200 None 2026-01-04 00:39:29,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c7d0108c6df89255b8875924ed52e264a72e581d?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:39:29,115 [ scc.repo] DEBUG - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-01-04 00:39:29,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654 HTTP/1.1" 200 None 2026-01-04 00:39:30,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654/comments HTTP/1.1" 200 None 2026-01-04 00:39:30,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063 HTTP/1.1" 200 None 2026-01-04 00:39:31,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:31,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:32,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e1b877b4b9b8cbb506d839dcb304a0b10df25063 HTTP/1.1" 200 None 2026-01-04 00:39:32,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e1b877b4b9b8cbb506d839dcb304a0b10df25063?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:39:32,796 [ scc.repo] DEBUG - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-01-04 00:39:33,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652 HTTP/1.1" 200 None 2026-01-04 00:39:33,306 [ scc.repo] DEBUG # ... Include label: include 2026-01-04 00:39:33,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-01-04 00:39:34,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:34,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:35,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-01-04 00:39:35,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e4dd3031a6f8b0295d88c5a27d510e2ead252234?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:39:35,958 [ scc.repo] DEBUG - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-01-04 00:39:36,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/649 HTTP/1.1" 200 None 2026-01-04 00:39:37,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/649/comments HTTP/1.1" 200 None 2026-01-04 00:39:37,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83 HTTP/1.1" 200 None 2026-01-04 00:39:38,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:38,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:39,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c481ecdb1b184268c7b8a9b1749838da27127e83 HTTP/1.1" 200 None 2026-01-04 00:39:39,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c481ecdb1b184268c7b8a9b1749838da27127e83?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:39:39,478 [ scc.repo] DEBUG - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-01-04 00:39:40,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648 HTTP/1.1" 200 None 2026-01-04 00:39:40,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/648/comments HTTP/1.1" 200 None 2026-01-04 00:39:40,479 [ scc.repo] DEBUG # ... Include label: include 2026-01-04 00:39:40,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827 HTTP/1.1" 200 None 2026-01-04 00:39:41,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:39:41,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/8b7ac78406a43da2a838a8bc7deedd4d19566827/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:39:42,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2026-01-04 00:39:43,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2026-01-04 00:39:43,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/619 HTTP/1.1" 200 None 2026-01-04 00:39:43,528 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:39:43,528 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-01-04 00:39:43,528 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:39:43,528 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:43,531 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:39:43,533 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:39:43,533 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:39:43,536 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:39:43,570 [ scc.git] DEBUG Updating 9cc36cde..88b01ef5 2026-01-04 00:39:44,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-01-04 00:39:45,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-01-04 00:39:45,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-01-04 00:39:46,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-01-04 00:39:47,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-01-04 00:39:47,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-01-04 00:39:48,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-01-04 00:39:48,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-01-04 00:39:49,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-01-04 00:39:50,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-01-04 00:39:50,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-01-04 00:39:51,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-01-04 00:39:52,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-01-04 00:39:53,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-01-04 00:39:53,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-01-04 00:39:54,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-01-04 00:39:55,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-01-04 00:39:55,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-01-04 00:39:55,816 [ scc.git] DEBUG Calling 'git fetch origin pull/649/head' 2026-01-04 00:39:56,104 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-04 00:39:56,104 [ scc.git] DEBUG * branch refs/pull/649/head -> FETCH_HEAD 2026-01-04 00:39:56,108 [ scc.git] DEBUG Calling 'git fetch origin pull/652/head' 2026-01-04 00:39:56,364 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-04 00:39:56,364 [ scc.git] DEBUG * branch refs/pull/652/head -> FETCH_HEAD 2026-01-04 00:39:56,368 [ scc.git] DEBUG Calling 'git fetch origin pull/654/head' 2026-01-04 00:39:56,627 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-04 00:39:56,627 [ scc.git] DEBUG * branch refs/pull/654/head -> FETCH_HEAD 2026-01-04 00:39:56,631 [ scc.git] DEBUG Calling 'git fetch origin pull/656/head' 2026-01-04 00:39:56,893 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-04 00:39:56,893 [ scc.git] DEBUG * branch refs/pull/656/head -> FETCH_HEAD 2026-01-04 00:39:56,897 [ scc.git] DEBUG Calling 'git fetch origin pull/657/head' 2026-01-04 00:39:57,161 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-01-04 00:39:57,161 [ scc.git] DEBUG * branch refs/pull/657/head -> FETCH_HEAD 2026-01-04 00:39:57,165 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:39:57,165 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:39:57,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:57,168 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c481ecdb1b184268c7b8a9b1749838da27127e83' 2026-01-04 00:39:57,174 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:57,176 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 649 (Replace manual changelog by automated GH release step) c481ecdb1b184268c7b8a9b1749838da27127e83' 2026-01-04 00:39:57,190 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-01-04 00:39:57,191 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:57,194 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2026-01-04 00:39:57,194 [ scc.git] DEBUG CHANGELOG.md | 388 ------------------------------------- 2026-01-04 00:39:57,194 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 388 deletions(-) 2026-01-04 00:39:57,194 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-01-04 00:39:57,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:57,343 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-01-04 00:39:57,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:57,352 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 652 (Add export option for PNG (72 dpi), fixes #394 ) e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-01-04 00:39:57,372 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-01-04 00:39:57,372 [ scc.git] DEBUG Auto-merging src/index.html 2026-01-04 00:39:57,372 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-01-04 00:39:57,372 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:57,377 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 163 ++++++++++++++++++++- 2026-01-04 00:39:57,377 [ scc.git] DEBUG src/index.html | 11 ++ 2026-01-04 00:39:57,377 [ scc.git] DEBUG src/js/views/figure_view.js | 1 + 2026-01-04 00:39:57,377 [ scc.git] DEBUG 3 files changed, 172 insertions(+), 3 deletions(-) 2026-01-04 00:39:57,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:57,747 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e1b877b4b9b8cbb506d839dcb304a0b10df25063' 2026-01-04 00:39:57,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:57,755 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 654 (Refresh metadata button to reload channel names, pixel sizes) e1b877b4b9b8cbb506d839dcb304a0b10df25063' 2026-01-04 00:39:57,773 [ scc.git] DEBUG Auto-merging src/index.html 2026-01-04 00:39:57,773 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-01-04 00:39:57,773 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-01-04 00:39:57,774 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:57,778 [ scc.git] DEBUG src/index.html | 5 +++ 2026-01-04 00:39:57,778 [ scc.git] DEBUG src/js/models/figure_model.js | 71 +++++++++++++++++++++++++++++++++++++++++++ 2026-01-04 00:39:57,778 [ scc.git] DEBUG src/js/views/figure_view.js | 7 +++++ 2026-01-04 00:39:57,778 [ scc.git] DEBUG 3 files changed, 83 insertions(+) 2026-01-04 00:39:58,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:58,293 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c7d0108c6df89255b8875924ed52e264a72e581d' 2026-01-04 00:39:58,298 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:58,300 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 656 (Option to add roi comment when adding ROI from OMERO) c7d0108c6df89255b8875924ed52e264a72e581d' 2026-01-04 00:39:58,311 [ scc.git] DEBUG Auto-merging src/js/shape_editor/shape_manager.js 2026-01-04 00:39:58,312 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:58,315 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 3 +- 2026-01-04 00:39:58,315 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 68 +++++++++++++++++------- 2026-01-04 00:39:58,315 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 7 ++- 2026-01-04 00:39:58,315 [ scc.git] DEBUG 3 files changed, 56 insertions(+), 22 deletions(-) 2026-01-04 00:39:58,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:58,683 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...edf6948abddd14cbbc1e13e1fb917c09d7c647fb' 2026-01-04 00:39:58,687 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:58,689 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 657 (Avoid division by zero and don't save x/y NaN in grid layout) edf6948abddd14cbbc1e13e1fb917c09d7c647fb' 2026-01-04 00:39:58,700 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-01-04 00:39:58,701 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:39:58,704 [ scc.git] DEBUG src/js/models/figure_model.js | 18 ++++++++++++------ 2026-01-04 00:39:58,704 [ scc.git] DEBUG 1 file changed, 12 insertions(+), 6 deletions(-) 2026-01-04 00:39:59,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:39:59,085 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:39:59,122 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:39:59,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:39:59,125 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:39:59,160 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:39:59,164 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e189b10> has no local changes 2026-01-04 00:39:59,164 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) Updating 9cc36cde..88b01ef5 Previously merged: - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:39:59,170 [ scc.git] DEBUG [detached HEAD ab285732] merge master -Dorg -Ssuccess-only 2026-01-04 00:39:59,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:39:59,171 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:39:59,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-01-04 00:40:00,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-01-04 00:40:00,077 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:00,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-01-04 00:40:01,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:01,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:02,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-01-04 00:40:02,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:02,819 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:40:03,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-01-04 00:40:03,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-01-04 00:40:04,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-01-04 00:40:04,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:05,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-01-04 00:40:05,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:05,679 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-01-04 00:40:05,679 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:40:05,679 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-01-04 00:40:05,679 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:40:05,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:05,681 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:40:05,683 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:40:05,683 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:40:05,686 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:40:05,689 [ scc.git] DEBUG Already up to date. 2026-01-04 00:40:05,689 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-01-04 00:40:05,953 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-01-04 00:40:05,953 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-01-04 00:40:05,957 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-01-04 00:40:06,206 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-01-04 00:40:06,206 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-01-04 00:40:06,210 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:40:06,210 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:40:06,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:06,212 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-01-04 00:40:06,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:06,217 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-01-04 00:40:06,224 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-01-04 00:40:06,225 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:40:06,228 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-01-04 00:40:06,228 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-01-04 00:40:06,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:06,530 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-01-04 00:40:06,533 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:06,535 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-01-04 00:40:06,542 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:40:06,545 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:40:06,545 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:40:06,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:06,936 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:40:06,972 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:40:06,973 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:06,975 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:40:07,011 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:40:07,014 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e192990> has no local changes 2026-01-04 00:40:07,014 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:40:07,019 [ scc.git] DEBUG [detached HEAD 0aee6db] merge master -Dorg -Ssuccess-only 2026-01-04 00:40:07,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:40:07,020 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:40:07,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-01-04 00:40:08,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-01-04 00:40:08,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-01-04 00:40:09,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-01-04 00:40:09,029 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:09,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-01-04 00:40:10,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:10,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:11,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-01-04 00:40:11,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:11,694 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-01-04 00:40:12,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-01-04 00:40:12,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-01-04 00:40:13,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-01-04 00:40:13,308 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:13,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-01-04 00:40:14,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:14,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:15,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-01-04 00:40:15,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:15,862 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-01-04 00:40:16,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-01-04 00:40:16,321 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:16,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-01-04 00:40:17,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:17,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:18,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-01-04 00:40:18,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:18,885 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-01-04 00:40:19,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-01-04 00:40:19,373 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:19,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-01-04 00:40:20,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:20,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:21,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-01-04 00:40:21,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:21,925 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-01-04 00:40:22,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-01-04 00:40:22,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-01-04 00:40:22,851 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:23,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-01-04 00:40:23,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:24,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:25,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-01-04 00:40:25,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:25,577 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-01-04 00:40:26,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-01-04 00:40:26,124 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:28,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-01-04 00:40:28,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:29,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:29,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-01-04 00:40:30,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:30,429 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-01-04 00:40:30,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-01-04 00:40:30,921 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:31,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-01-04 00:40:31,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:32,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:33,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-01-04 00:40:33,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:33,444 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-01-04 00:40:33,444 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:40:33,444 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-01-04 00:40:33,444 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:40:33,444 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:33,447 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:40:33,449 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:40:33,449 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:40:33,452 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:40:33,455 [ scc.git] DEBUG Already up to date. 2026-01-04 00:40:33,455 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-01-04 00:40:33,729 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-04 00:40:33,729 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-01-04 00:40:33,733 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-01-04 00:40:33,986 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-04 00:40:33,986 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-01-04 00:40:33,991 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-01-04 00:40:34,243 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-04 00:40:34,243 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-01-04 00:40:34,247 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-01-04 00:40:34,499 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-04 00:40:34,499 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-01-04 00:40:34,503 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-01-04 00:40:34,754 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-04 00:40:34,754 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-01-04 00:40:34,758 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-01-04 00:40:35,012 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-04 00:40:35,012 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-01-04 00:40:35,016 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-01-04 00:40:35,276 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-01-04 00:40:35,276 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-01-04 00:40:35,280 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:40:35,280 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:40:35,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:35,282 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-01-04 00:40:35,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:35,287 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-01-04 00:40:35,295 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:40:35,299 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-01-04 00:40:35,299 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-01-04 00:40:35,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:35,452 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-01-04 00:40:35,454 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:35,456 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-01-04 00:40:35,471 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:40:35,471 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:40:35,476 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-01-04 00:40:35,476 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-01-04 00:40:35,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:35,851 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-01-04 00:40:35,854 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:35,856 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-01-04 00:40:35,871 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:40:35,871 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-04 00:40:35,871 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:40:35,872 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:40:35,874 [ scc.git] DEBUG Calling 'git reset --hard cfc948615b40547aa6214a55fb3a5a5c821305f6' 2026-01-04 00:40:35,879 [ scc.git] DEBUG HEAD is now at cfc9486 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-01-04 00:40:36,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:36,250 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-01-04 00:40:36,252 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-01-04 00:40:36,255 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-01-04 00:40:36,257 [ scc.config] DEBUG Found github.token 2026-01-04 00:40:36,257 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-01-04 00:40:36,257 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-01-04 00:40:36,259 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:36,261 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-01-04 00:40:36,275 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:40:36,276 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:40:36,281 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-01-04 00:40:36,281 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-01-04 00:40:36,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:36,796 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-01-04 00:40:36,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:36,800 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-01-04 00:40:36,815 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:40:36,816 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:40:36,820 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-01-04 00:40:36,820 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-01-04 00:40:37,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:37,191 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-01-04 00:40:37,194 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:37,196 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-01-04 00:40:37,210 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:40:37,210 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-04 00:40:37,211 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:40:37,211 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:40:37,213 [ scc.git] DEBUG Calling 'git reset --hard 372f8abd59a5e978ddc353823c4e1c7855b0f45e' 2026-01-04 00:40:37,218 [ scc.git] DEBUG HEAD is now at 372f8ab merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-01-04 00:40:37,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:37,584 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-01-04 00:40:37,587 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-01-04 00:40:37,589 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-01-04 00:40:37,591 [ scc.config] DEBUG Found github.token 2026-01-04 00:40:37,591 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-01-04 00:40:37,591 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-01-04 00:40:37,594 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:37,596 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-01-04 00:40:37,613 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:40:37,613 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-04 00:40:37,614 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:40:37,614 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:40:37,617 [ scc.git] DEBUG Calling 'git reset --hard 372f8abd59a5e978ddc353823c4e1c7855b0f45e' 2026-01-04 00:40:37,621 [ scc.git] DEBUG HEAD is now at 372f8ab merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-01-04 00:40:37,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:40:37,981 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-01-04 00:40:37,983 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-01-04 00:40:37,986 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-01-04 00:40:37,988 [ scc.config] DEBUG Found github.token 2026-01-04 00:40:37,988 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-01-04 00:40:37,988 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:40:38,024 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:40:38,024 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:40:38,026 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:40:38,062 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:40:38,066 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e187390> has no local changes 2026-01-04 00:40:38,066 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:40:38,072 [ scc.git] DEBUG [detached HEAD 6bf097f] merge master -Dorg -Ssuccess-only 2026-01-04 00:40:38,072 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:40:38,072 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:40:38,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-01-04 00:40:39,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/513 HTTP/1.1" 200 None 2026-01-04 00:40:39,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-01-04 00:40:40,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:40,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:41,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-01-04 00:40:41,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/aebb6273b9267a47a47363208fa97dc9c638a688?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:41,525 [ scc.repo] DEBUG - PR 513 jburel 'Bump Python version' 2026-01-04 00:40:41,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/512 HTTP/1.1" 200 None 2026-01-04 00:40:42,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-01-04 00:40:43,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:43,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:44,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-01-04 00:40:44,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/ec8f9e716c574a715529da53dff61ef178020c43?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:44,752 [ scc.repo] DEBUG - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-01-04 00:40:45,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/511 HTTP/1.1" 200 None 2026-01-04 00:40:45,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/508 HTTP/1.1" 200 None 2026-01-04 00:40:46,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2026-01-04 00:40:46,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2026-01-04 00:40:47,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2026-01-04 00:40:47,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2026-01-04 00:40:47,863 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:48,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-01-04 00:40:48,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:49,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:49,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-01-04 00:40:50,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:50,412 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-01-04 00:40:50,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2026-01-04 00:40:50,882 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:40:51,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-01-04 00:40:51,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:52,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:40:53,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-01-04 00:40:53,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:53,413 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-01-04 00:40:53,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2026-01-04 00:40:54,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2026-01-04 00:40:54,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-01-04 00:40:55,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-01-04 00:40:56,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-01-04 00:40:56,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:56,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-01-04 00:40:57,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:40:57,382 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-01-04 00:40:58,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2026-01-04 00:40:58,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2026-01-04 00:40:59,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-01-04 00:40:59,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:40:59,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-01-04 00:41:00,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:00,556 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2026-01-04 00:41:01,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2026-01-04 00:41:01,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2026-01-04 00:41:02,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-01-04 00:41:02,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:03,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-01-04 00:41:03,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:03,532 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2026-01-04 00:41:03,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2026-01-04 00:41:04,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2026-01-04 00:41:05,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2026-01-04 00:41:05,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:05,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:05,996 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:41:05,996 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-01-04 00:41:05,997 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:05,997 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:05,999 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:41:06,001 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:41:06,001 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:41:06,004 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:41:06,011 [ scc.git] DEBUG Updating 7a798ce..5e2de43 2026-01-04 00:41:06,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-01-04 00:41:07,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-01-04 00:41:07,284 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2026-01-04 00:41:07,563 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-04 00:41:07,564 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2026-01-04 00:41:07,567 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2026-01-04 00:41:07,830 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-04 00:41:07,831 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2026-01-04 00:41:07,835 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-01-04 00:41:08,086 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-04 00:41:08,086 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-01-04 00:41:08,091 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2026-01-04 00:41:08,345 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-04 00:41:08,345 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2026-01-04 00:41:08,349 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2026-01-04 00:41:08,605 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-04 00:41:08,605 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2026-01-04 00:41:08,609 [ scc.git] DEBUG Calling 'git fetch origin pull/512/head' 2026-01-04 00:41:08,861 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-04 00:41:08,861 [ scc.git] DEBUG * branch refs/pull/512/head -> FETCH_HEAD 2026-01-04 00:41:08,865 [ scc.git] DEBUG Calling 'git fetch origin pull/513/head' 2026-01-04 00:41:09,121 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-01-04 00:41:09,121 [ scc.git] DEBUG * branch refs/pull/513/head -> FETCH_HEAD 2026-01-04 00:41:09,125 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:41:09,125 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:09,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:09,127 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-01-04 00:41:09,131 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:09,133 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-01-04 00:41:09,143 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2026-01-04 00:41:09,143 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2026-01-04 00:41:09,144 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:09,147 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2026-01-04 00:41:09,147 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2026-01-04 00:41:09,147 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2026-01-04 00:41:09,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:09,290 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2026-01-04 00:41:09,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:09,296 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2026-01-04 00:41:09,311 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2026-01-04 00:41:09,311 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-01-04 00:41:09,311 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2026-01-04 00:41:09,311 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-01-04 00:41:09,311 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:09,315 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2026-01-04 00:41:09,315 [ scc.git] DEBUG src/app/context.js | 6 +- 2026-01-04 00:41:09,315 [ scc.git] DEBUG src/app/header.html | 5 + 2026-01-04 00:41:09,315 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2026-01-04 00:41:09,315 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2026-01-04 00:41:09,315 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2026-01-04 00:41:09,315 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2026-01-04 00:41:09,315 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2026-01-04 00:41:09,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:09,678 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-01-04 00:41:09,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:09,684 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-01-04 00:41:09,694 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-01-04 00:41:09,695 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:09,698 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-01-04 00:41:09,698 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-01-04 00:41:09,698 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-01-04 00:41:10,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:10,067 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-01-04 00:41:10,071 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:10,073 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-01-04 00:41:10,090 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:10,098 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2026-01-04 00:41:10,098 [ scc.git] DEBUG package.json | 2 +- 2026-01-04 00:41:10,098 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2026-01-04 00:41:10,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:10,642 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-01-04 00:41:10,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:10,648 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-01-04 00:41:10,684 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:41:10,684 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-01-04 00:41:10,684 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:41:10,685 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:41:10,687 [ scc.git] DEBUG Calling 'git reset --hard 0075bce06dc968ddfcb2518abd6a23ced5a8d8bf' 2026-01-04 00:41:10,699 [ scc.git] DEBUG HEAD is now at 0075bce merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2026-01-04 00:41:11,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:11,048 [ scc.git] DEBUG Calling 'git merge-base 5e2de43ad401fb00690a79644056e0ac15fabfd5 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-01-04 00:41:11,051 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..5e2de43ad401fb00690a79644056e0ac15fabfd5' 2026-01-04 00:41:11,053 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2026-01-04 00:41:11,055 [ scc.config] DEBUG Found github.token 2026-01-04 00:41:11,055 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2026-01-04 00:41:11,055 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ec8f9e716c574a715529da53dff61ef178020c43' 2026-01-04 00:41:11,059 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:11,061 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 512 (Replace manual changelog by automated GH release step) ec8f9e716c574a715529da53dff61ef178020c43' 2026-01-04 00:41:11,073 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:11,076 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2026-01-04 00:41:11,076 [ scc.git] DEBUG CHANGELOG.md | 261 ------------------------------------- 2026-01-04 00:41:11,076 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 261 deletions(-) 2026-01-04 00:41:11,076 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-01-04 00:41:11,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:11,440 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...aebb6273b9267a47a47363208fa97dc9c638a688' 2026-01-04 00:41:11,444 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:11,447 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 513 (Bump Python version) aebb6273b9267a47a47363208fa97dc9c638a688' 2026-01-04 00:41:11,455 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-01-04 00:41:11,456 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:11,459 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 4 ++-- 2026-01-04 00:41:11,459 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2026-01-04 00:41:11,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:11,844 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:41:11,884 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:11,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:11,886 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:41:11,923 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:41:11,926 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e193d10> has no local changes 2026-01-04 00:41:11,926 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:41:11,933 [ scc.git] DEBUG [detached HEAD d7cff78] merge master -Dorg -Ssuccess-only 2026-01-04 00:41:11,933 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:41:11,933 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:41:12,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-01-04 00:41:13,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-01-04 00:41:13,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-01-04 00:41:13,575 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:41:14,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-01-04 00:41:14,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:15,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:15,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-01-04 00:41:16,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:16,115 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:41:16,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-01-04 00:41:17,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-01-04 00:41:17,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:18,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-01-04 00:41:18,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:18,915 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:41:19,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-01-04 00:41:19,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-01-04 00:41:20,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-01-04 00:41:20,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:21,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-01-04 00:41:21,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:21,701 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2026-01-04 00:41:21,701 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:41:21,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-01-04 00:41:21,701 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:21,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:21,703 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:41:21,706 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:41:21,706 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:41:21,708 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:41:21,711 [ scc.git] DEBUG Already up to date. 2026-01-04 00:41:21,712 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-01-04 00:41:21,976 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-01-04 00:41:21,976 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-01-04 00:41:21,981 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-01-04 00:41:22,233 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-01-04 00:41:22,233 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-01-04 00:41:22,238 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-01-04 00:41:22,490 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-01-04 00:41:22,490 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-01-04 00:41:22,495 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:41:22,495 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:22,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:22,497 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-01-04 00:41:22,500 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:22,503 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-01-04 00:41:22,510 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:22,514 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2026-01-04 00:41:22,514 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2026-01-04 00:41:22,514 [ scc.git] DEBUG requirements.txt | 2 +- 2026-01-04 00:41:22,514 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2026-01-04 00:41:22,514 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2026-01-04 00:41:22,514 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-01-04 00:41:22,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:22,673 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-01-04 00:41:22,676 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:22,678 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-01-04 00:41:22,686 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:22,688 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:41:22,688 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:41:23,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:23,090 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-01-04 00:41:23,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:23,096 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-01-04 00:41:23,102 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-01-04 00:41:23,102 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-01-04 00:41:23,103 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:41:23,103 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:41:23,105 [ scc.git] DEBUG Calling 'git reset --hard 6d8adc3275196dc3df8c8d126efbfd325628828c' 2026-01-04 00:41:23,109 [ scc.git] DEBUG HEAD is now at 6d8adc3 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-01-04 00:41:23,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:23,488 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-01-04 00:41:23,490 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-01-04 00:41:23,492 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-01-04 00:41:23,494 [ scc.config] DEBUG Found github.token 2026-01-04 00:41:23,494 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-01-04 00:41:23,494 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:41:23,532 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:23,532 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:23,534 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:41:23,570 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:41:23,573 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f1c190> has no local changes 2026-01-04 00:41:23,573 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:41:23,579 [ scc.git] DEBUG [detached HEAD 09faaa8] merge master -Dorg -Ssuccess-only 2026-01-04 00:41:23,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:41:23,580 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:41:24,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-01-04 00:41:24,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-01-04 00:41:25,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-01-04 00:41:25,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-01-04 00:41:26,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:26,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-01-04 00:41:27,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:27,066 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-01-04 00:41:27,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2026-01-04 00:41:27,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2026-01-04 00:41:28,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-01-04 00:41:28,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:29,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-01-04 00:41:29,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:29,858 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-01-04 00:41:29,858 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:41:29,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-01-04 00:41:29,858 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:29,859 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:29,861 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:41:29,863 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:41:29,863 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:41:29,866 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:41:29,872 [ scc.git] DEBUG Updating 3cd120c..55060a2 2026-01-04 00:41:30,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-01-04 00:41:30,513 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2026-01-04 00:41:30,780 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-01-04 00:41:30,780 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2026-01-04 00:41:30,785 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-01-04 00:41:31,037 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-01-04 00:41:31,037 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-01-04 00:41:31,041 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:41:31,041 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:31,041 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:31,043 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-01-04 00:41:31,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:31,050 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-01-04 00:41:31,061 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2026-01-04 00:41:31,061 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2026-01-04 00:41:31,061 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-01-04 00:41:31,061 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-01-04 00:41:31,061 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:41:31,062 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:41:31,064 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-04 00:41:31,068 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-01-04 00:41:31,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:31,233 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-01-04 00:41:31,237 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-04 00:41:31,240 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2026-01-04 00:41:31,242 [ scc.config] DEBUG Found github.token 2026-01-04 00:41:31,243 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2026-01-04 00:41:31,243 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-01-04 00:41:31,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:31,249 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-01-04 00:41:31,262 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-01-04 00:41:31,262 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-01-04 00:41:31,262 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-01-04 00:41:31,262 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:41:31,263 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:41:31,265 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-04 00:41:31,270 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-01-04 00:41:31,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:31,636 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2026-01-04 00:41:31,639 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2026-01-04 00:41:31,642 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-01-04 00:41:31,644 [ scc.config] DEBUG Found github.token 2026-01-04 00:41:31,644 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-01-04 00:41:31,644 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:41:31,682 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:31,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:31,684 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:41:31,719 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:41:31,723 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e190290> has no local changes 2026-01-04 00:41:31,723 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:41:31,729 [ scc.git] DEBUG [detached HEAD 7206983] merge master -Dorg -Ssuccess-only 2026-01-04 00:41:31,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:41:31,729 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:41:32,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-01-04 00:41:32,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-01-04 00:41:33,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-01-04 00:41:33,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:34,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:34,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-01-04 00:41:35,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:35,306 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:41:35,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-01-04 00:41:35,813 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:41:36,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-01-04 00:41:36,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:37,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:37,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-01-04 00:41:38,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:38,187 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-01-04 00:41:38,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-01-04 00:41:38,698 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:41:39,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-01-04 00:41:39,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:40,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:40,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-01-04 00:41:41,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:41,153 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-01-04 00:41:41,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-01-04 00:41:42,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-01-04 00:41:42,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-01-04 00:41:43,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-01-04 00:41:43,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-01-04 00:41:44,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-01-04 00:41:44,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-01-04 00:41:44,638 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:41:44,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-01-04 00:41:44,638 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:44,638 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:44,641 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:41:44,643 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:41:44,643 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:41:44,646 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:41:44,648 [ scc.git] DEBUG Already up to date. 2026-01-04 00:41:44,649 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-01-04 00:41:44,918 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-01-04 00:41:44,918 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-01-04 00:41:44,921 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-01-04 00:41:45,171 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-01-04 00:41:45,171 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-01-04 00:41:45,175 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-01-04 00:41:45,423 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-01-04 00:41:45,423 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-01-04 00:41:45,427 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:41:45,427 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:45,427 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:45,429 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-01-04 00:41:45,432 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:45,434 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-01-04 00:41:45,441 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:45,444 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-01-04 00:41:45,444 [ scc.git] DEBUG package.json | 2 +- 2026-01-04 00:41:45,445 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-01-04 00:41:45,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:45,596 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-01-04 00:41:45,599 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:45,601 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-01-04 00:41:45,610 [ scc.git] DEBUG Auto-merging package-lock.json 2026-01-04 00:41:45,610 [ scc.git] DEBUG Auto-merging package.json 2026-01-04 00:41:45,610 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:45,613 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-01-04 00:41:45,613 [ scc.git] DEBUG package.json | 2 +- 2026-01-04 00:41:45,613 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-01-04 00:41:46,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:46,003 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-01-04 00:41:46,006 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:46,008 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-01-04 00:41:46,015 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:46,017 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:41:46,017 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:41:46,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:46,551 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:41:46,588 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:46,588 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:46,590 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:41:46,626 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:41:46,629 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e15ec50> has no local changes 2026-01-04 00:41:46,629 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:41:46,635 [ scc.git] DEBUG [detached HEAD 2f03f04] merge master -Dorg -Ssuccess-only 2026-01-04 00:41:46,635 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:41:46,636 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:41:47,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-01-04 00:41:47,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-01-04 00:41:47,680 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:41:48,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-01-04 00:41:48,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:49,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:49,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-01-04 00:41:50,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:41:50,350 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:41:50,350 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:41:50,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-01-04 00:41:50,350 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:50,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:50,352 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:41:50,355 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:41:50,355 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:41:50,357 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:41:50,360 [ scc.git] DEBUG Already up to date. 2026-01-04 00:41:50,360 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-01-04 00:41:50,631 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-01-04 00:41:50,631 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-01-04 00:41:50,635 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:41:50,635 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:50,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:50,638 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-01-04 00:41:50,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:50,642 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-01-04 00:41:50,648 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:41:50,651 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:41:50,651 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:41:50,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:41:50,944 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:41:50,980 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:41:50,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:41:50,982 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:41:51,018 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:41:51,021 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f4e6d0> has no local changes 2026-01-04 00:41:51,021 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:41:51,026 [ scc.git] DEBUG [detached HEAD 867c12f] merge master -Dorg -Ssuccess-only 2026-01-04 00:41:51,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:41:51,027 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:41:51,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-01-04 00:41:51,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2026-01-04 00:41:51,980 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:41:52,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-01-04 00:41:53,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:53,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:54,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-01-04 00:41:54,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:55,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-01-04 00:41:55,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2026-01-04 00:41:55,491 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:41:55,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2026-01-04 00:41:56,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2026-01-04 00:41:56,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-01-04 00:41:57,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:57,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:41:58,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-01-04 00:41:58,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2026-01-04 00:41:59,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-01-04 00:41:59,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2026-01-04 00:41:59,707 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2026-01-04 00:42:00,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-01-04 00:42:00,171 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:00,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-01-04 00:42:00,171 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:00,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:00,173 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:00,176 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:00,176 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:00,178 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:00,181 [ scc.git] DEBUG Already up to date. 2026-01-04 00:42:00,181 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2026-01-04 00:42:00,450 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-01-04 00:42:00,450 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2026-01-04 00:42:00,454 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2026-01-04 00:42:00,708 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-01-04 00:42:00,708 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2026-01-04 00:42:00,713 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:00,713 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:00,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:00,715 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2026-01-04 00:42:00,717 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:00,719 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2026-01-04 00:42:00,726 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:00,729 [ scc.git] DEBUG setup.py | 4 +- 2026-01-04 00:42:00,729 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2026-01-04 00:42:00,729 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2026-01-04 00:42:00,729 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2026-01-04 00:42:00,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:00,875 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2026-01-04 00:42:00,877 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:00,879 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2026-01-04 00:42:00,886 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:00,888 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:42:00,888 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:42:01,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:01,425 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:01,461 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:01,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:01,463 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:01,499 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:01,502 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e193250> has no local changes 2026-01-04 00:42:01,502 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:01,508 [ scc.git] DEBUG [detached HEAD 21cc582] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:01,508 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:01,508 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:01,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-01-04 00:42:02,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-01-04 00:42:02,438 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:42:03,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-01-04 00:42:03,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:03,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:04,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-01-04 00:42:04,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:04,893 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:42:05,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-01-04 00:42:05,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-01-04 00:42:06,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-01-04 00:42:06,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:07,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-01-04 00:42:07,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:07,857 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-01-04 00:42:07,857 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:07,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-01-04 00:42:07,858 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:07,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:07,860 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:07,862 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:07,862 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:07,865 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:07,868 [ scc.git] DEBUG Already up to date. 2026-01-04 00:42:07,868 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-01-04 00:42:08,154 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-01-04 00:42:08,154 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-01-04 00:42:08,158 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-01-04 00:42:08,414 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-01-04 00:42:08,414 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-01-04 00:42:08,419 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:08,419 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:08,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:08,421 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-01-04 00:42:08,424 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:08,426 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-01-04 00:42:08,434 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG Auto-merging setup.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-01-04 00:42:08,434 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:42:08,434 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:42:08,437 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-01-04 00:42:08,440 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-01-04 00:42:08,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:08,589 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-01-04 00:42:08,592 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-01-04 00:42:08,594 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - Upstream changes - setup.py - omero_signup/views.py - omero_signup/urls.py - omero_signup/signup_settings.py --conflicts 2026-01-04 00:42:08,596 [ scc.config] DEBUG Found github.token 2026-01-04 00:42:08,596 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-01-04 00:42:08,596 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-01-04 00:42:08,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:08,600 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-01-04 00:42:08,607 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:08,609 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:42:08,609 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:42:08,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:08,998 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:09,035 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:09,035 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:09,037 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:09,072 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:09,076 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f07f90> has no local changes 2026-01-04 00:42:09,076 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:09,081 [ scc.git] DEBUG [detached HEAD 7d5ac14] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:09,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:09,081 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:09,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-01-04 00:42:10,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-01-04 00:42:10,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-01-04 00:42:11,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-01-04 00:42:11,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2026-01-04 00:42:12,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:12,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:12,527 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:12,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-01-04 00:42:12,527 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:12,527 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:12,530 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:12,532 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:12,532 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:12,535 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:12,541 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-01-04 00:42:13,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-01-04 00:42:14,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-01-04 00:42:14,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-01-04 00:42:14,895 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:14,895 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:14,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:14,897 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:14,934 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:14,934 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:14,936 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:14,972 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:14,975 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f49690> has no local changes 2026-01-04 00:42:14,975 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:14,981 [ scc.git] DEBUG [detached HEAD ad8fb91] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:14,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:14,981 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:15,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-01-04 00:42:15,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-01-04 00:42:15,924 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:42:16,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-01-04 00:42:16,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:17,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:18,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-01-04 00:42:18,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:18,509 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:42:18,509 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:18,509 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-01-04 00:42:18,509 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:18,509 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:18,512 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:18,514 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:18,514 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:18,516 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:18,519 [ scc.git] DEBUG Already up to date. 2026-01-04 00:42:18,519 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-01-04 00:42:18,785 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-01-04 00:42:18,785 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-01-04 00:42:18,789 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:18,789 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:18,789 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:18,791 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-01-04 00:42:18,794 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:18,796 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-01-04 00:42:18,802 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:18,805 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:42:18,805 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:42:18,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:18,971 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:19,008 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:19,008 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:19,010 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:19,046 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:19,048 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f59910> has no local changes 2026-01-04 00:42:19,049 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:19,054 [ scc.git] DEBUG [detached HEAD f86fe18] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:19,054 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:19,054 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:19,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-01-04 00:42:20,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-01-04 00:42:20,018 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:42:20,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-01-04 00:42:21,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:21,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:22,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-01-04 00:42:22,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:22,735 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:42:22,735 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:22,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-01-04 00:42:22,735 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:22,735 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:22,737 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:22,739 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:22,739 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:22,742 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:22,748 [ scc.git] DEBUG Updating deab817..160d894 2026-01-04 00:42:23,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-01-04 00:42:23,425 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-01-04 00:42:23,685 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-01-04 00:42:23,685 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-01-04 00:42:23,688 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:23,689 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:23,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:23,691 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-01-04 00:42:23,693 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:23,695 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-01-04 00:42:23,701 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:23,704 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:42:23,704 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:42:23,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:23,855 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:23,892 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:23,892 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:23,894 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:23,930 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:23,933 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f9a110> has no local changes 2026-01-04 00:42:23,933 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:23,938 [ scc.git] DEBUG [detached HEAD 7383807] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:23,938 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:23,939 [ scc.git] INFO Overriding base-branch from master to main 2026-01-04 00:42:23,939 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:24,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-01-04 00:42:24,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-01-04 00:42:25,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-01-04 00:42:25,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-01-04 00:42:26,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:26,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:27,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-01-04 00:42:27,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:27,892 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-01-04 00:42:28,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-01-04 00:42:28,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-01-04 00:42:29,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-01-04 00:42:29,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-01-04 00:42:30,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:30,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-01-04 00:42:31,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:31,384 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-01-04 00:42:31,384 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:31,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-01-04 00:42:31,384 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:31,384 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:31,387 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-01-04 00:42:31,389 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:31,389 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-01-04 00:42:31,391 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-01-04 00:42:31,398 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-01-04 00:42:32,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-01-04 00:42:32,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-01-04 00:42:32,795 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-01-04 00:42:33,058 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-01-04 00:42:33,058 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-01-04 00:42:33,062 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-01-04 00:42:33,319 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-01-04 00:42:33,319 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-01-04 00:42:33,323 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:33,323 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:33,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:33,325 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-01-04 00:42:33,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:33,330 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-01-04 00:42:33,336 [ scc.git] DEBUG Auto-merging README.rst 2026-01-04 00:42:33,337 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-01-04 00:42:33,337 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-01-04 00:42:33,337 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-01-04 00:42:33,337 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-01-04 00:42:33,337 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-01-04 00:42:33,340 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-01-04 00:42:33,343 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-01-04 00:42:33,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:33,513 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-01-04 00:42:33,515 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-01-04 00:42:33,517 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#8](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-01-04 00:42:33,519 [ scc.config] DEBUG Found github.token 2026-01-04 00:42:33,520 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-01-04 00:42:33,520 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-01-04 00:42:33,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:33,524 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-01-04 00:42:33,532 [ scc.git] DEBUG Auto-merging README.rst 2026-01-04 00:42:33,532 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-01-04 00:42:33,533 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:33,536 [ scc.git] DEBUG README.rst | 3 + 2026-01-04 00:42:33,536 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-01-04 00:42:33,536 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-01-04 00:42:33,536 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-01-04 00:42:33,536 [ scc.git] DEBUG setup.py | 5 +- 2026-01-04 00:42:33,536 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-01-04 00:42:33,536 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-01-04 00:42:33,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:33,923 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:33,959 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:33,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:33,961 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:33,997 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:34,000 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f15ad0> has no local changes 2026-01-04 00:42:34,000 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:34,006 [ scc.git] DEBUG [detached HEAD b6d1157] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:34,006 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:34,006 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:34,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-01-04 00:42:34,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-01-04 00:42:34,898 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:42:35,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-01-04 00:42:35,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:36,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:36,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-01-04 00:42:37,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:37,403 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:42:37,403 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:37,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-01-04 00:42:37,403 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:37,403 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:37,405 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:37,408 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:37,408 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:37,410 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:37,413 [ scc.git] DEBUG Already up to date. 2026-01-04 00:42:37,413 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-01-04 00:42:37,692 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-01-04 00:42:37,692 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-01-04 00:42:37,696 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:37,696 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:37,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:37,698 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-01-04 00:42:37,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:37,703 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-01-04 00:42:37,709 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:37,711 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:42:37,711 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:42:38,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:38,009 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:38,045 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:38,045 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:38,047 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:38,082 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:38,085 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86f8e4d0> has no local changes 2026-01-04 00:42:38,085 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:38,091 [ scc.git] DEBUG [detached HEAD 54a8849] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:38,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:38,091 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:38,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-01-04 00:42:39,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-01-04 00:42:39,202 [ scc.repo] DEBUG # ... Include label: dependencies 2026-01-04 00:42:39,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-01-04 00:42:40,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:40,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:41,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-01-04 00:42:41,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:41,686 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:42:41,687 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:41,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-01-04 00:42:41,687 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:41,687 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:41,689 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:41,691 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:41,691 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:41,694 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:41,697 [ scc.git] DEBUG Already up to date. 2026-01-04 00:42:41,697 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-01-04 00:42:41,965 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-01-04 00:42:41,965 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-01-04 00:42:41,968 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:41,969 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:41,969 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:41,971 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-01-04 00:42:41,973 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:41,975 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-01-04 00:42:41,982 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:41,984 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-01-04 00:42:41,984 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-01-04 00:42:42,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:42,285 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:42,322 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:42,322 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:42,324 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:42,360 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:42,363 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e1b9010> has no local changes 2026-01-04 00:42:42,363 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:42,369 [ scc.git] DEBUG [detached HEAD 0303cfa] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:42,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:42,369 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:42,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-01-04 00:42:42,712 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:42,712 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-01-04 00:42:42,712 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:42,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:42,714 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-01-04 00:42:42,716 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:42,716 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-01-04 00:42:42,719 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-01-04 00:42:42,722 [ scc.git] DEBUG Already up to date. 2026-01-04 00:42:42,722 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:42,722 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:42,722 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:42,724 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:42,761 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:42,761 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:42,763 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:42,797 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:42,800 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad86fa7390> has no local changes 2026-01-04 00:42:42,800 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:42,806 [ scc.git] DEBUG [detached HEAD 56c1e86] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:42,806 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:42,806 [ scc.git] INFO Overriding base-branch from master to develop 2026-01-04 00:42:42,806 [ scc.repo] DEBUG ## PRs found: 2026-01-04 00:42:43,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-01-04 00:42:43,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/231 HTTP/1.1" 200 None 2026-01-04 00:42:44,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None 2026-01-04 00:42:44,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-01-04 00:42:45,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-01-04 00:42:45,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/61803424b63d5c1bf9ff0906f389526c875c901d HTTP/1.1" 200 None 2026-01-04 00:42:46,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/61803424b63d5c1bf9ff0906f389526c875c901d?per_page=1 HTTP/1.1" 200 2 2026-01-04 00:42:46,035 [ scc.repo] DEBUG - PR 231 jburel 'Create Release ' 2026-01-04 00:42:46,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2026-01-04 00:42:46,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2026-01-04 00:42:46,968 [ scc.repo] DEBUG ## Branches found: 2026-01-04 00:42:46,969 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-01-04 00:42:46,969 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:46,969 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:46,971 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-01-04 00:42:46,973 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-01-04 00:42:46,973 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-01-04 00:42:46,976 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-01-04 00:42:46,987 [ scc.git] DEBUG Updating 4b4c755..18a9a75 2026-01-04 00:42:47,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-01-04 00:42:48,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-01-04 00:42:48,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-01-04 00:42:49,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-01-04 00:42:50,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-01-04 00:42:51,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-01-04 00:42:51,123 [ scc.git] DEBUG Calling 'git fetch origin pull/231/head' 2026-01-04 00:42:51,388 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-01-04 00:42:51,388 [ scc.git] DEBUG * branch refs/pull/231/head -> FETCH_HEAD 2026-01-04 00:42:51,392 [ scc.git] DEBUG ## Unique users: [] 2026-01-04 00:42:51,392 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:51,392 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:51,394 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...61803424b63d5c1bf9ff0906f389526c875c901d' 2026-01-04 00:42:51,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:51,399 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 231 (Create Release ) 61803424b63d5c1bf9ff0906f389526c875c901d' 2026-01-04 00:42:51,406 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-01-04 00:42:51,409 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 11 +++++++---- 2026-01-04 00:42:51,409 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 4 deletions(-) 2026-01-04 00:42:51,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:51,560 [ scc.git] DEBUG Calling 'git submodule update' 2026-01-04 00:42:51,597 [ scc.git] DEBUG Get sha1 of %s 2026-01-04 00:42:51,597 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-01-04 00:42:51,599 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:51,635 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:42:51,638 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8e1ad490> has no local changes 2026-01-04 00:42:51,638 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..18a9a75 Previously merged: - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 231 jburel 'Create Release ' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:42:51,644 [ scc.git] DEBUG [detached HEAD d05b79e] merge master -Dorg -Ssuccess-only 2026-01-04 00:42:51,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:42:51,644 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-01-04 00:42:51,712 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-01-04 00:42:51,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:51,950 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-01-04 00:42:51,952 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-01-04 00:42:52,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:52,355 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-01-04 00:42:52,357 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-01-04 00:42:52,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:52,765 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-01-04 00:42:52,766 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-01-04 00:42:53,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:53,157 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-01-04 00:42:53,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:53,578 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-01-04 00:42:53,580 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-01-04 00:42:53,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:53,978 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-01-04 00:42:53,980 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-01-04 00:42:54,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:54,391 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-01-04 00:42:54,393 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-01-04 00:42:54,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:54,799 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-01-04 00:42:54,801 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-01-04 00:42:55,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:55,220 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-01-04 00:42:55,222 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-01-04 00:42:55,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:55,635 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-01-04 00:42:55,636 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-01-04 00:42:56,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:56,033 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-01-04 00:42:56,035 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-01-04 00:42:56,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:56,461 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-01-04 00:42:56,463 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-01-04 00:42:56,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:56,868 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-01-04 00:42:57,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:57,257 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-01-04 00:42:57,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:57,797 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-01-04 00:42:57,799 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-01-04 00:42:58,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:58,188 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-01-04 00:42:58,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:58,579 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-01-04 00:42:58,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:58,974 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-01-04 00:42:58,976 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-01-04 00:42:59,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:59,375 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-01-04 00:42:59,377 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-01-04 00:42:59,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:42:59,792 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-01-04 00:42:59,794 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-01-04 00:43:00,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:43:00,178 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-01-04 00:43:00,179 [ scc.config] DEBUG Found submodule.scripts.url 2026-01-04 00:43:00,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-01-04 00:43:00,566 [ scc.config] DEBUG Found submodule.scripts.branch 2026-01-04 00:43:00,566 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-01-04 00:43:00,640 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fad8f126510> has local changes 2026-01-04 00:43:00,640 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 174 will-moore 'Skip wells' - PR 181 will-moore 'Add labels support for import' - PR 186 jburel 'Create release from tag' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Repository: ome/omero-figure Excluded PRs: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) Updating 9cc36cde..88b01ef5 Previously merged: - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..18a9a75 Previously merged: - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 231 jburel 'Create Release ' Generated by OMERO-plugins-push#8 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/8/)' 2026-01-04 00:43:00,651 [ scc.git] DEBUG [detached HEAD b806480] merge master -Dorg -Ssuccess-only 2026-01-04 00:43:00,651 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2026-01-04 00:43:00,652 [ scc.merge] INFO Repository: ome/omero-plugins 2026-01-04 00:43:00,652 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-01-04 00:43:00,652 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-01-04 00:43:00,652 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-01-04 00:43:00,652 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-01-04 00:43:00,652 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-01-04 00:43:00,652 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-01-04 00:43:00,652 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-01-04 00:43:00,652 [ scc.merge] INFO 2026-01-04 00:43:00,652 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-01-04 00:43:00,652 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure) 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-01-04 00:43:00,652 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-01-04 00:43:00,653 [ scc.merge] INFO Updating 11d3587..37ea700 2026-01-04 00:43:00,653 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:43:00,653 [ scc.merge] INFO 2026-01-04 00:43:00,653 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-01-04 00:43:00,653 [ scc.merge] INFO 2026-01-04 00:43:00,653 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-01-04 00:43:00,653 [ scc.merge] INFO 2026-01-04 00:43:00,653 [ scc.merge] INFO Repository: ome/omero-figure 2026-01-04 00:43:00,653 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required) 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft) 2026-01-04 00:43:00,653 [ scc.merge] INFO Updating 9cc36cde..88b01ef5 2026-01-04 00:43:00,653 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:43:00,653 [ scc.merge] INFO 2026-01-04 00:43:00,653 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-01-04 00:43:00,653 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-01-04 00:43:00,654 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Repository: ome/omero-gallery 2026-01-04 00:43:00,654 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-01-04 00:43:00,654 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft) 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2026-01-04 00:43:00,654 [ scc.merge] INFO Updating 7a798ce..5e2de43 2026-01-04 00:43:00,654 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,654 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-04 00:43:00,654 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-01-04 00:43:00,654 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Repository: ome/omero-mapr 2026-01-04 00:43:00,655 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-01-04 00:43:00,655 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Repository: ome/omero-metadata 2026-01-04 00:43:00,655 [ scc.merge] INFO Updating 3cd120c..55060a2 2026-01-04 00:43:00,655 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Repository: ome/omero-parade 2026-01-04 00:43:00,655 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-01-04 00:43:00,655 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-01-04 00:43:00,655 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Repository: ome/omero-rois 2026-01-04 00:43:00,655 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-01-04 00:43:00,655 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2026-01-04 00:43:00,655 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,655 [ scc.merge] INFO 2026-01-04 00:43:00,655 [ scc.merge] INFO Repository: ome/omero-signup 2026-01-04 00:43:00,656 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-01-04 00:43:00,656 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2026-01-04 00:43:00,656 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-01-04 00:43:00,656 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Repository: ome/omero-upload 2026-01-04 00:43:00,656 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-01-04 00:43:00,656 [ scc.merge] INFO Updating deab817..160d894 2026-01-04 00:43:00,656 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-01-04 00:43:00,656 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-01-04 00:43:00,656 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-01-04 00:43:00,656 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Conflicting PRs (not included): 2026-01-04 00:43:00,656 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,656 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-01-04 00:43:00,656 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,656 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,657 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-01-04 00:43:00,657 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,657 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,657 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-01-04 00:43:00,657 [ scc.merge] INFO Already up to date. 2026-01-04 00:43:00,657 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] INFO Repository: ome/scripts 2026-01-04 00:43:00,657 [ scc.merge] INFO Excluded PRs: 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2026-01-04 00:43:00,657 [ scc.merge] INFO Updating 4b4c755..18a9a75 2026-01-04 00:43:00,657 [ scc.merge] INFO Previously merged: 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-01-04 00:43:00,657 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] INFO Merged PRs: 2026-01-04 00:43:00,657 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-01-04 00:43:00,657 [ scc.merge] INFO 2026-01-04 00:43:00,657 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-01-04 00:43:00,657 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,659 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-01-04 00:43:00,659 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,661 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,661 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-01-04 00:43:00,661 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-01-04 00:43:00,664 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,665 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,666 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-01-04 00:43:00,666 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,668 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,668 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-01-04 00:43:00,668 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,670 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,670 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-01-04 00:43:00,670 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,672 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,672 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-01-04 00:43:00,672 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-01-04 00:43:00,674 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,676 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,676 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-01-04 00:43:00,676 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,678 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,678 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-01-04 00:43:00,678 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,680 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,680 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-01-04 00:43:00,680 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,682 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,682 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-01-04 00:43:00,682 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,684 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,684 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-01-04 00:43:00,684 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,686 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,686 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-01-04 00:43:00,686 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-01-04 00:43:00,689 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-01-04 00:43:00,691 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-01-04 00:43:00,693 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,695 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,695 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-01-04 00:43:00,695 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-01-04 00:43:00,697 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,699 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-01-04 00:43:00,699 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-01-04 00:43:00,701 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-01-04 00:43:00,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-01-04 00:43:00,703 [ scc.git] DEBUG Calling 'git remote' 2026-01-04 00:43:00,705 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD ab5f1ac] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 605705d] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-01-04 00:43:48,122 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-01-04 00:43:57,423 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-01-04 00:43:59,898 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-04 00:44:04,612 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-01-04 00:44:43,439 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS