Skipping 190 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2026-01-07 15:14:02,130 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:14:02,133 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878bacb10> has no local changes
2026-01-07 15:14:02,134 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:14:02,139 [ scc.git] DEBUG [detached HEAD a20b227] merge master -Dorg -Ssuccess-only
2026-01-07 15:14:02,140 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:14:02,140 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:14:02,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-01-07 15:14:03,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-01-07 15:14:03,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-01-07 15:14:03,784 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:14:04,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-07 15:14:04,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:05,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:14:06,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-07 15:14:06,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:06,492 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:14:06,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-01-07 15:14:07,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-07 15:14:07,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:08,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-07 15:14:08,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:08,894 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:14:09,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-01-07 15:14:09,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-01-07 15:14:10,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-07 15:14:10,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:11,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-07 15:14:11,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:11,924 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-01-07 15:14:11,924 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:14:11,924 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-07 15:14:11,924 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:11,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:11,926 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:14:11,929 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:14:11,929 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:14:11,931 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:14:11,934 [ scc.git] DEBUG Already up to date.
2026-01-07 15:14:11,934 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-01-07 15:14:12,216 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-07 15:14:12,217 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-01-07 15:14:12,220 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-01-07 15:14:13,482 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-07 15:14:13,483 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-01-07 15:14:13,487 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-01-07 15:14:14,754 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-07 15:14:14,754 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-01-07 15:14:14,758 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:14:14,758 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:14,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:14,760 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-07 15:14:14,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:14,766 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-07 15:14:14,774 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:14,777 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-01-07 15:14:14,777 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-01-07 15:14:14,777 [ scc.git] DEBUG requirements.txt | 2 +-
2026-01-07 15:14:14,777 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-01-07 15:14:14,777 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-01-07 15:14:14,777 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-01-07 15:14:14,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:14,955 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-07 15:14:14,958 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:14,961 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-07 15:14:14,968 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:14,971 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:14:14,971 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:14:15,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:15,430 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-07 15:14:15,433 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:15,436 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-07 15:14:15,443 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-01-07 15:14:15,443 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-01-07 15:14:15,443 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-07 15:14:15,443 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-07 15:14:15,446 [ scc.git] DEBUG Calling 'git reset --hard a67d75e48c7f562f782db44fe159082623667618'
2026-01-07 15:14:15,449 [ scc.git] DEBUG HEAD is now at a67d75e merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-01-07 15:14:15,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:15,823 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-07 15:14:15,825 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-01-07 15:14:15,828 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#12](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-01-07 15:14:15,830 [ scc.config] DEBUG Found github.token
2026-01-07 15:14:15,830 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-01-07 15:14:15,830 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:14:15,868 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:15,868 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:15,870 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:14:15,907 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:14:15,910 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878bab090> has no local changes
2026-01-07 15:14:15,911 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:14:15,917 [ scc.git] DEBUG [detached HEAD 27d2642] merge master -Dorg -Ssuccess-only
2026-01-07 15:14:15,917 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:14:15,917 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:14:16,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-01-07 15:14:16,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-01-07 15:14:17,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-01-07 15:14:18,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-07 15:14:18,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:19,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-07 15:14:19,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:19,510 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-07 15:14:20,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-01-07 15:14:20,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-01-07 15:14:21,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-07 15:14:21,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:22,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-07 15:14:22,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:22,763 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-07 15:14:22,763 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:14:22,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-07 15:14:22,763 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:22,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:22,765 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:14:22,768 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:14:22,768 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:14:22,770 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:14:22,777 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-01-07 15:14:23,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-01-07 15:14:23,822 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-01-07 15:14:24,108 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-07 15:14:24,108 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-01-07 15:14:24,112 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-01-07 15:14:24,595 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-07 15:14:24,595 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-01-07 15:14:24,599 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:14:24,599 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:24,599 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:24,601 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-07 15:14:24,605 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:24,607 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-07 15:14:24,618 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-01-07 15:14:24,618 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-01-07 15:14:24,618 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-07 15:14:24,618 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-07 15:14:24,619 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-07 15:14:24,619 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-07 15:14:24,621 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-07 15:14:24,625 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-07 15:14:24,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:24,779 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-07 15:14:24,783 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-07 15:14:24,786 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#12](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-01-07 15:14:24,788 [ scc.config] DEBUG Found github.token
2026-01-07 15:14:24,788 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-01-07 15:14:24,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-07 15:14:24,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:24,794 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-07 15:14:24,807 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-07 15:14:24,807 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-07 15:14:24,807 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-01-07 15:14:24,807 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-07 15:14:24,808 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-07 15:14:24,811 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-07 15:14:24,815 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-07 15:14:25,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:25,331 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-07 15:14:25,334 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-07 15:14:25,337 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#12](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-01-07 15:14:25,339 [ scc.config] DEBUG Found github.token
2026-01-07 15:14:25,339 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-01-07 15:14:25,339 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:14:25,376 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:25,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:25,379 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:14:25,416 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:14:25,420 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f387bd84d50> has no local changes
2026-01-07 15:14:25,420 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:14:25,425 [ scc.git] DEBUG [detached HEAD 452849e] merge master -Dorg -Ssuccess-only
2026-01-07 15:14:25,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:14:25,426 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:14:25,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-01-07 15:14:26,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-01-07 15:14:27,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-07 15:14:27,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:28,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:14:28,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-07 15:14:29,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:29,433 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:14:29,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-01-07 15:14:29,979 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:14:30,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-07 15:14:31,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:31,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:14:32,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-07 15:14:32,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:32,817 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-07 15:14:33,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-01-07 15:14:33,468 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:14:34,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-07 15:14:34,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:35,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:14:35,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-07 15:14:36,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:36,101 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-07 15:14:36,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-01-07 15:14:37,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-01-07 15:14:37,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-01-07 15:14:38,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-01-07 15:14:38,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-01-07 15:14:39,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-01-07 15:14:39,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-01-07 15:14:39,896 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:14:39,897 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-07 15:14:39,897 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:39,897 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:39,899 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:14:39,901 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:14:39,902 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:14:39,904 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:14:39,907 [ scc.git] DEBUG Already up to date.
2026-01-07 15:14:39,907 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-01-07 15:14:41,209 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-07 15:14:41,209 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-01-07 15:14:41,213 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-01-07 15:14:41,465 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-07 15:14:41,465 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-01-07 15:14:41,469 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-01-07 15:14:41,724 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-07 15:14:41,724 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-01-07 15:14:41,728 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:14:41,728 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:41,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:41,730 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-07 15:14:41,733 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:41,735 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-07 15:14:41,741 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:41,744 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-01-07 15:14:41,745 [ scc.git] DEBUG package.json | 2 +-
2026-01-07 15:14:41,745 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-01-07 15:14:42,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:42,057 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-01-07 15:14:42,060 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:42,062 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-01-07 15:14:42,071 [ scc.git] DEBUG Auto-merging package-lock.json
2026-01-07 15:14:42,071 [ scc.git] DEBUG Auto-merging package.json
2026-01-07 15:14:42,071 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:42,075 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-01-07 15:14:42,075 [ scc.git] DEBUG package.json | 2 +-
2026-01-07 15:14:42,075 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-01-07 15:14:42,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:42,469 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-07 15:14:42,472 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:42,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-07 15:14:42,482 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:42,485 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:14:42,485 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:14:43,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:43,049 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:14:43,086 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:43,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:43,088 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:14:43,126 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:14:43,129 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f387bd6f550> has no local changes
2026-01-07 15:14:43,129 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:14:43,135 [ scc.git] DEBUG [detached HEAD 0a0fe04] merge master -Dorg -Ssuccess-only
2026-01-07 15:14:43,135 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:14:43,135 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:14:43,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-01-07 15:14:44,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-01-07 15:14:44,126 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:14:44,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-07 15:14:45,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:45,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:14:46,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-07 15:14:46,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:14:46,746 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:14:46,746 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:14:46,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-07 15:14:46,746 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:46,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:46,749 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:14:46,752 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:14:46,752 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:14:46,754 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:14:46,757 [ scc.git] DEBUG Already up to date.
2026-01-07 15:14:46,757 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-01-07 15:14:47,023 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-01-07 15:14:47,023 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-01-07 15:14:47,027 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:14:47,027 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:47,027 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:47,029 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-07 15:14:47,032 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:47,034 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-07 15:14:47,040 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:47,043 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:14:47,043 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:14:47,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:47,191 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:14:47,230 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:47,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:47,232 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:14:47,269 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:14:47,272 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f387bd93010> has no local changes
2026-01-07 15:14:47,272 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:14:47,277 [ scc.git] DEBUG [detached HEAD cea9508] merge master -Dorg -Ssuccess-only
2026-01-07 15:14:47,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:14:47,277 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:14:47,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-01-07 15:14:48,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-01-07 15:14:48,317 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:14:48,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-07 15:14:49,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:49,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:14:50,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-07 15:14:50,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:51,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-07 15:14:52,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-01-07 15:14:52,032 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:14:52,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-01-07 15:14:53,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-01-07 15:14:53,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-07 15:14:54,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:54,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:14:55,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-07 15:14:55,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-01-07 15:14:56,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-07 15:14:56,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-01-07 15:14:56,874 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-01-07 15:14:57,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-01-07 15:14:57,395 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:14:57,395 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-07 15:14:57,396 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:57,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:57,398 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:14:57,400 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:14:57,400 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:14:57,403 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:14:57,406 [ scc.git] DEBUG Already up to date.
2026-01-07 15:14:57,406 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-01-07 15:14:57,694 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-07 15:14:57,694 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-01-07 15:14:57,698 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-01-07 15:14:57,950 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-07 15:14:57,950 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-01-07 15:14:57,954 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:14:57,954 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:57,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:57,956 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-07 15:14:57,958 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:57,960 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-07 15:14:57,967 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:57,970 [ scc.git] DEBUG setup.py | 4 +-
2026-01-07 15:14:57,970 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-01-07 15:14:57,970 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-01-07 15:14:57,970 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-01-07 15:14:58,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:58,130 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-01-07 15:14:58,133 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:58,136 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-01-07 15:14:58,142 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:14:58,145 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:14:58,145 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:14:58,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:14:58,534 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:14:58,571 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:14:58,571 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:14:58,573 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:14:58,610 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:14:58,613 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878bebb50> has no local changes
2026-01-07 15:14:58,613 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:14:58,618 [ scc.git] DEBUG [detached HEAD cca4cac] merge master -Dorg -Ssuccess-only
2026-01-07 15:14:58,619 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:14:58,619 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:14:59,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-01-07 15:14:59,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-01-07 15:14:59,691 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:15:00,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-07 15:15:00,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:01,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:15:01,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-07 15:15:02,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:02,309 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:02,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-01-07 15:15:03,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-01-07 15:15:03,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-07 15:15:04,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:04,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-07 15:15:05,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:05,323 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-07 15:15:05,323 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:05,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-07 15:15:05,323 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:05,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:05,326 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:15:05,328 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:05,328 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:15:05,331 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:15:05,333 [ scc.git] DEBUG Already up to date.
2026-01-07 15:15:05,333 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-07 15:15:06,643 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-07 15:15:06,643 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-07 15:15:06,647 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-07 15:15:06,915 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-07 15:15:06,915 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-07 15:15:06,919 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:06,919 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:06,919 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:06,921 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-07 15:15:06,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:06,926 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-07 15:15:06,933 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-01-07 15:15:06,933 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-01-07 15:15:06,933 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-01-07 15:15:06,933 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-01-07 15:15:06,934 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-01-07 15:15:06,934 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-01-07 15:15:06,934 [ scc.git] DEBUG Auto-merging setup.py
2026-01-07 15:15:06,934 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-01-07 15:15:06,934 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-07 15:15:06,934 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-07 15:15:06,936 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-07 15:15:06,940 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-01-07 15:15:07,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:07,101 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-07 15:15:07,104 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-07 15:15:07,106 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#12](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/urls.py
- omero_signup/signup_settings.py
- omero_signup/views.py
- setup.py
--conflicts
2026-01-07 15:15:07,108 [ scc.config] DEBUG Found github.token
2026-01-07 15:15:07,108 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-01-07 15:15:07,108 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-07 15:15:07,111 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:07,113 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-07 15:15:07,120 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:15:07,122 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:15:07,122 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:15:07,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:07,521 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:07,561 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:07,561 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:07,563 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:07,601 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:07,603 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878be8850> has no local changes
2026-01-07 15:15:07,604 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:07,609 [ scc.git] DEBUG [detached HEAD c5be7b5] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:07,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:07,610 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:08,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-01-07 15:15:08,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-01-07 15:15:09,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-01-07 15:15:09,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-01-07 15:15:10,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-01-07 15:15:10,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:11,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:15:11,183 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:11,183 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-07 15:15:11,183 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:11,183 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:11,186 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:15:11,188 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:11,188 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:15:11,190 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:15:11,197 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-01-07 15:15:11,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-01-07 15:15:12,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-01-07 15:15:13,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-01-07 15:15:13,536 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:13,537 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:13,537 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:13,539 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:13,578 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:13,578 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:13,580 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:13,617 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:13,620 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878bdbd90> has no local changes
2026-01-07 15:15:13,620 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:13,626 [ scc.git] DEBUG [detached HEAD 4a9dbbb] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:13,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:13,627 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:14,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-01-07 15:15:14,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-01-07 15:15:14,657 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:15:15,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-07 15:15:15,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:16,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:15:16,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-07 15:15:17,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:17,169 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:17,170 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:17,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-07 15:15:17,170 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:17,170 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:17,172 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:15:17,174 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:17,174 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:15:17,177 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:15:17,180 [ scc.git] DEBUG Already up to date.
2026-01-07 15:15:17,180 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-07 15:15:17,440 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-01-07 15:15:17,440 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-07 15:15:17,443 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:17,443 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:17,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:17,445 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-07 15:15:17,448 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:17,450 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-07 15:15:17,456 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:15:17,459 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:15:17,459 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:15:17,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:17,617 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:17,655 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:17,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:17,657 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:17,694 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:17,697 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f387bd84950> has no local changes
2026-01-07 15:15:17,697 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:17,703 [ scc.git] DEBUG [detached HEAD 5809823] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:17,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:17,703 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:18,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-01-07 15:15:18,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-01-07 15:15:18,701 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:15:19,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-07 15:15:19,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:20,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:15:20,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-07 15:15:21,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:21,396 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:21,397 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:21,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-07 15:15:21,397 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:21,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:21,399 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:15:21,401 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:21,401 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:15:21,404 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:15:21,410 [ scc.git] DEBUG Updating deab817..160d894
2026-01-07 15:15:22,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-01-07 15:15:22,199 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-07 15:15:22,473 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-01-07 15:15:22,473 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-07 15:15:22,477 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:22,477 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:22,477 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:22,479 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-07 15:15:22,482 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:22,484 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-07 15:15:22,490 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:15:22,493 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:15:22,493 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:15:22,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:22,646 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:22,684 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:22,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:22,686 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:22,722 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:22,725 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878c26090> has no local changes
2026-01-07 15:15:22,725 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:22,731 [ scc.git] DEBUG [detached HEAD a85f589] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:22,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:22,731 [ scc.git] INFO Overriding base-branch from master to main
2026-01-07 15:15:22,731 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:23,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-01-07 15:15:23,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-01-07 15:15:24,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-01-07 15:15:24,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-07 15:15:25,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:25,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:15:26,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-07 15:15:26,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:26,630 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-01-07 15:15:27,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-01-07 15:15:27,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-01-07 15:15:28,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-01-07 15:15:28,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-07 15:15:29,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:29,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-07 15:15:30,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:30,157 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-07 15:15:30,157 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:30,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-07 15:15:30,157 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:30,157 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:30,160 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-01-07 15:15:30,162 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:30,162 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-01-07 15:15:30,164 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-01-07 15:15:30,172 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-01-07 15:15:30,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-01-07 15:15:31,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-01-07 15:15:31,610 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-01-07 15:15:31,901 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-07 15:15:31,902 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-01-07 15:15:31,905 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-01-07 15:15:32,161 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-07 15:15:32,161 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-01-07 15:15:32,164 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:32,164 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:32,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:32,167 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-07 15:15:32,169 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:32,171 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-07 15:15:32,179 [ scc.git] DEBUG Auto-merging README.rst
2026-01-07 15:15:32,179 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-01-07 15:15:32,179 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-01-07 15:15:32,179 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-07 15:15:32,179 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-07 15:15:32,179 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-07 15:15:32,182 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-07 15:15:32,185 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-01-07 15:15:32,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:32,359 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-07 15:15:32,362 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-07 15:15:32,364 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#12](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-01-07 15:15:32,366 [ scc.config] DEBUG Found github.token
2026-01-07 15:15:32,366 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-01-07 15:15:32,366 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-07 15:15:32,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:32,371 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-07 15:15:32,378 [ scc.git] DEBUG Auto-merging README.rst
2026-01-07 15:15:32,378 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-07 15:15:32,379 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:15:32,382 [ scc.git] DEBUG README.rst | 3 +
2026-01-07 15:15:32,382 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-01-07 15:15:32,382 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-01-07 15:15:32,382 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-01-07 15:15:32,382 [ scc.git] DEBUG setup.py | 5 +-
2026-01-07 15:15:32,383 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-01-07 15:15:32,383 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-01-07 15:15:32,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:32,761 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:32,799 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:32,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:32,801 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:32,838 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:32,841 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878becb90> has no local changes
2026-01-07 15:15:32,841 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:32,847 [ scc.git] DEBUG [detached HEAD 4efdad9] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:32,848 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:32,848 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:33,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-01-07 15:15:33,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-01-07 15:15:33,868 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:15:34,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-07 15:15:35,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:35,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:15:36,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-07 15:15:36,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:36,645 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:36,645 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:36,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-07 15:15:36,646 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:36,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:36,648 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:15:36,650 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:36,650 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:15:36,653 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:15:36,656 [ scc.git] DEBUG Already up to date.
2026-01-07 15:15:36,656 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-01-07 15:15:36,977 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-01-07 15:15:36,978 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-01-07 15:15:36,982 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:36,982 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:36,982 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:36,984 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-07 15:15:36,986 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:36,989 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-07 15:15:36,995 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:15:36,998 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:15:36,998 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:15:37,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:37,157 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:37,195 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:37,195 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:37,197 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:37,236 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:37,239 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878c513d0> has no local changes
2026-01-07 15:15:37,239 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:37,245 [ scc.git] DEBUG [detached HEAD 5b9ec08] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:37,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:37,245 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:37,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-01-07 15:15:38,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-01-07 15:15:38,188 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-07 15:15:38,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-07 15:15:39,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-07 15:15:39,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-07 15:15:40,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-07 15:15:40,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-01-07 15:15:40,865 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:40,865 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:40,865 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-07 15:15:40,865 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:40,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:40,867 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:15:40,870 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:40,870 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:15:40,872 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:15:40,875 [ scc.git] DEBUG Already up to date.
2026-01-07 15:15:40,875 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-01-07 15:15:41,155 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-01-07 15:15:41,155 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-01-07 15:15:41,159 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:41,159 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:41,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:41,161 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-07 15:15:41,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:41,166 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-07 15:15:41,172 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-07 15:15:41,175 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-07 15:15:41,175 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-07 15:15:41,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:41,492 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:41,531 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:41,531 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:41,533 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:41,570 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:41,573 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878ba72d0> has no local changes
2026-01-07 15:15:41,573 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:41,579 [ scc.git] DEBUG [detached HEAD e609387] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:41,580 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:41,580 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:41,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-01-07 15:15:41,924 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:41,924 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-07 15:15:41,925 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:41,925 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:41,927 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-07 15:15:41,929 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:41,929 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-07 15:15:41,932 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-07 15:15:41,934 [ scc.git] DEBUG Already up to date.
2026-01-07 15:15:41,934 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:41,934 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:41,934 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:41,937 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:41,973 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:41,973 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:41,975 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:42,010 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:42,013 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f3878c975d0> has no local changes
2026-01-07 15:15:42,013 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:42,019 [ scc.git] DEBUG [detached HEAD d01f357] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:42,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:42,019 [ scc.git] INFO Overriding base-branch from master to develop
2026-01-07 15:15:42,019 [ scc.repo] DEBUG ## PRs found:
2026-01-07 15:15:42,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-01-07 15:15:43,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-01-07 15:15:43,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-01-07 15:15:43,585 [ scc.repo] DEBUG ## Branches found:
2026-01-07 15:15:43,585 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-07 15:15:43,586 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:43,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:43,588 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-01-07 15:15:43,590 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-07 15:15:43,590 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-01-07 15:15:43,593 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-01-07 15:15:43,605 [ scc.git] DEBUG Updating 4b4c755..fb91f15
2026-01-07 15:15:44,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-01-07 15:15:45,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-01-07 15:15:45,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-01-07 15:15:46,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-01-07 15:15:47,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-01-07 15:15:47,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-01-07 15:15:48,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-01-07 15:15:48,712 [ scc.git] DEBUG ## Unique users: []
2026-01-07 15:15:48,712 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:48,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:48,714 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-07 15:15:48,753 [ scc.git] DEBUG Get sha1 of %s
2026-01-07 15:15:48,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-07 15:15:48,755 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:48,792 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:48,796 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f38782a2bd0> has no local changes
2026-01-07 15:15:48,796 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:48,802 [ scc.git] DEBUG [detached HEAD 9039c53] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:48,802 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:48,802 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-07 15:15:48,870 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-01-07 15:15:49,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:49,139 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-01-07 15:15:49,141 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-01-07 15:15:49,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:49,534 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-01-07 15:15:49,536 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-01-07 15:15:49,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:49,932 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-01-07 15:15:49,933 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-01-07 15:15:50,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:50,329 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-01-07 15:15:50,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:50,744 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-01-07 15:15:50,746 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-01-07 15:15:51,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:51,153 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-01-07 15:15:51,155 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-01-07 15:15:51,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:51,588 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-01-07 15:15:51,590 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-01-07 15:15:51,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:51,999 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-01-07 15:15:52,001 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-01-07 15:15:52,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:52,435 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-01-07 15:15:52,437 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-01-07 15:15:52,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:52,829 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-01-07 15:15:52,831 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-01-07 15:15:53,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:53,231 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-01-07 15:15:53,233 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-01-07 15:15:53,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:53,661 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-01-07 15:15:53,663 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-01-07 15:15:54,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:54,075 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-01-07 15:15:54,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:54,488 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-01-07 15:15:54,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:54,923 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-01-07 15:15:54,925 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-01-07 15:15:55,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:55,356 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-01-07 15:15:55,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:55,764 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-01-07 15:15:56,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:56,160 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-01-07 15:15:56,162 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-01-07 15:15:56,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:56,568 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-01-07 15:15:56,570 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-01-07 15:15:56,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:56,967 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-01-07 15:15:56,969 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-01-07 15:15:57,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:57,383 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-01-07 15:15:57,385 [ scc.config] DEBUG Found submodule.scripts.url
2026-01-07 15:15:57,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-07 15:15:57,829 [ scc.config] DEBUG Found submodule.scripts.branch
2026-01-07 15:15:57,829 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-07 15:15:57,902 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f387e98ebd0> has local changes
2026-01-07 15:15:57,902 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..ddcf816a
Previously merged:
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#12 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/12/)'
2026-01-07 15:15:57,913 [ scc.git] DEBUG [detached HEAD 7b6aad3] merge master -Dorg -Ssuccess-only
2026-01-07 15:15:57,913 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-01-07 15:15:57,913 [ scc.merge] INFO Repository: ome/omero-plugins
2026-01-07 15:15:57,913 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,913 [ scc.merge] INFO
2026-01-07 15:15:57,913 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,913 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-01-07 15:15:57,913 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-01-07 15:15:57,913 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-01-07 15:15:57,913 [ scc.merge] INFO
2026-01-07 15:15:57,913 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-01-07 15:15:57,913 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,913 [ scc.merge] INFO
2026-01-07 15:15:57,913 [ scc.merge] INFO
2026-01-07 15:15:57,914 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-01-07 15:15:57,914 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-01-07 15:15:57,914 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,914 [ scc.merge] INFO
2026-01-07 15:15:57,914 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,914 [ scc.merge] INFO
2026-01-07 15:15:57,914 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-01-07 15:15:57,914 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-01-07 15:15:57,914 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-01-07 15:15:57,914 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-01-07 15:15:57,914 [ scc.merge] INFO
2026-01-07 15:15:57,914 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-01-07 15:15:57,914 [ scc.merge] INFO
2026-01-07 15:15:57,914 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-01-07 15:15:57,914 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-01-07 15:15:57,914 [ scc.merge] INFO Updating 11d3587..37ea700
2026-01-07 15:15:57,914 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:15:57,914 [ scc.merge] INFO
2026-01-07 15:15:57,914 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-01-07 15:15:57,914 [ scc.merge] INFO
2026-01-07 15:15:57,914 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-01-07 15:15:57,914 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-01-07 15:15:57,914 [ scc.merge] INFO
2026-01-07 15:15:57,915 [ scc.merge] INFO Repository: ome/omero-figure
2026-01-07 15:15:57,915 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' (status: action_required)
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2026-01-07 15:15:57,915 [ scc.merge] INFO Updating 9cc36cde..ddcf816a
2026-01-07 15:15:57,915 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:15:57,915 [ scc.merge] INFO
2026-01-07 15:15:57,915 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-01-07 15:15:57,915 [ scc.merge] INFO
2026-01-07 15:15:57,915 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-01-07 15:15:57,915 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,915 [ scc.merge] INFO
2026-01-07 15:15:57,915 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,915 [ scc.merge] INFO
2026-01-07 15:15:57,915 [ scc.merge] INFO Repository: ome/omero-gallery
2026-01-07 15:15:57,915 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,915 [ scc.merge] INFO
2026-01-07 15:15:57,915 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-01-07 15:15:57,915 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-01-07 15:15:57,915 [ scc.merge] INFO
2026-01-07 15:15:57,915 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-01-07 15:15:57,916 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-01-07 15:15:57,916 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-01-07 15:15:57,916 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Repository: ome/omero-mapr
2026-01-07 15:15:57,916 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-01-07 15:15:57,916 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Repository: ome/omero-metadata
2026-01-07 15:15:57,916 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-01-07 15:15:57,916 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-07 15:15:57,916 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-07 15:15:57,916 [ scc.merge] INFO
2026-01-07 15:15:57,916 [ scc.merge] INFO Repository: ome/omero-parade
2026-01-07 15:15:57,917 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-01-07 15:15:57,917 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-01-07 15:15:57,917 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Repository: ome/omero-rois
2026-01-07 15:15:57,917 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-07 15:15:57,917 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Repository: ome/omero-signup
2026-01-07 15:15:57,917 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-01-07 15:15:57,917 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-01-07 15:15:57,917 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-01-07 15:15:57,917 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-01-07 15:15:57,917 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Repository: ome/omero-upload
2026-01-07 15:15:57,917 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,917 [ scc.merge] INFO
2026-01-07 15:15:57,917 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-01-07 15:15:57,918 [ scc.merge] INFO Updating deab817..160d894
2026-01-07 15:15:57,918 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-01-07 15:15:57,918 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-01-07 15:15:57,918 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-01-07 15:15:57,918 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-01-07 15:15:57,918 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-01-07 15:15:57,918 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Merged PRs:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-01-07 15:15:57,918 [ scc.merge] INFO Already up to date.
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO
2026-01-07 15:15:57,918 [ scc.merge] INFO Repository: ome/scripts
2026-01-07 15:15:57,918 [ scc.merge] INFO Excluded PRs:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-01-07 15:15:57,918 [ scc.merge] INFO Updating 4b4c755..fb91f15
2026-01-07 15:15:57,918 [ scc.merge] INFO Previously merged:
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-01-07 15:15:57,918 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-01-07 15:15:57,919 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-01-07 15:15:57,919 [ scc.merge] INFO
2026-01-07 15:15:57,919 [ scc.merge] INFO
2026-01-07 15:15:57,919 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-07 15:15:57,919 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,921 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-01-07 15:15:57,921 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,923 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,923 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-01-07 15:15:57,923 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-01-07 15:15:57,925 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-01-07 15:15:57,927 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,929 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,929 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-01-07 15:15:57,929 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,931 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,931 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-01-07 15:15:57,931 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,933 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,933 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-01-07 15:15:57,933 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-01-07 15:15:57,935 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,937 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,937 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-07 15:15:57,937 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,940 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,940 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-07 15:15:57,940 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-07 15:15:57,942 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,944 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,944 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-07 15:15:57,944 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,946 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,946 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-07 15:15:57,946 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,948 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,948 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-07 15:15:57,948 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,950 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,950 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-07 15:15:57,950 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,952 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,952 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-07 15:15:57,952 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,954 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,954 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-07 15:15:57,954 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,956 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,957 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-07 15:15:57,957 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-07 15:15:57,959 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-07 15:15:57,961 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-07 15:15:57,963 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-07 15:15:57,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-07 15:15:57,965 [ scc.git] DEBUG Calling 'git remote'
2026-01-07 15:15:57,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD ccaae54] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 5bbb9ea] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-01-07 15:16:46,745 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-01-07 15:16:56,404 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-01-07 15:16:59,035 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-07 15:17:04,123 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-07 15:17:45,003 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
