Skipping 192 KB..
Full LogTestTestTestTestTestTestTestTestTestTestTestTestTest
2026-01-11 00:39:51,199 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:39:51,203 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd316893d0> has no local changes
2026-01-11 00:39:51,203 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:39:51,209 [ scc.git] DEBUG [detached HEAD 5eacd19] merge master -Dorg -Ssuccess-only
2026-01-11 00:39:51,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:39:51,209 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:39:51,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-01-11 00:39:52,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-01-11 00:39:52,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-01-11 00:39:52,606 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:39:53,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-11 00:39:53,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:39:54,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:39:54,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None
2026-01-11 00:39:55,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:39:55,195 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:39:55,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-01-11 00:39:56,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-11 00:39:56,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:39:57,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None
2026-01-11 00:39:57,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:39:57,588 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:39:58,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-01-11 00:39:58,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-01-11 00:39:59,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-11 00:39:59,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:39:59,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-01-11 00:40:00,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:00,393 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-01-11 00:40:00,394 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:40:00,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-11 00:40:00,394 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:00,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:00,396 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:40:00,399 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:40:00,399 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:40:00,401 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:40:00,404 [ scc.git] DEBUG Already up to date.
2026-01-11 00:40:00,404 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-01-11 00:40:00,677 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-11 00:40:00,677 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-01-11 00:40:00,681 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-01-11 00:40:00,937 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-11 00:40:00,937 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-01-11 00:40:00,941 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-01-11 00:40:01,194 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-01-11 00:40:01,194 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-01-11 00:40:01,198 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:40:01,198 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:01,198 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:01,200 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-11 00:40:01,204 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:01,206 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-01-11 00:40:01,213 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:01,216 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-01-11 00:40:01,216 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-01-11 00:40:01,216 [ scc.git] DEBUG requirements.txt | 2 +-
2026-01-11 00:40:01,216 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-01-11 00:40:01,216 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-01-11 00:40:01,216 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-01-11 00:40:01,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:01,356 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-11 00:40:01,359 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:01,361 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-01-11 00:40:01,369 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:01,371 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:40:01,372 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:40:01,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:01,748 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-11 00:40:01,751 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:01,753 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-11 00:40:01,760 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-01-11 00:40:01,760 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-01-11 00:40:01,760 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-11 00:40:01,760 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-11 00:40:01,763 [ scc.git] DEBUG Calling 'git reset --hard e06ca578baaefe9a8a2104a6cf96979d1021b35a'
2026-01-11 00:40:01,767 [ scc.git] DEBUG HEAD is now at e06ca57 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-01-11 00:40:02,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:02,144 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-01-11 00:40:02,147 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-01-11 00:40:02,150 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#16](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-01-11 00:40:02,152 [ scc.config] DEBUG Found github.token
2026-01-11 00:40:02,152 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-01-11 00:40:02,152 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:40:02,189 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:02,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:02,191 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:40:02,227 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:40:02,230 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd31672e90> has no local changes
2026-01-11 00:40:02,230 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:40:02,236 [ scc.git] DEBUG [detached HEAD 8f8b5c5] merge master -Dorg -Ssuccess-only
2026-01-11 00:40:02,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:40:02,236 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:40:02,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-01-11 00:40:03,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-01-11 00:40:03,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-01-11 00:40:04,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-11 00:40:04,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:05,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-01-11 00:40:05,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:05,746 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-11 00:40:06,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-01-11 00:40:06,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-01-11 00:40:07,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-11 00:40:07,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:08,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-01-11 00:40:08,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:08,568 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-11 00:40:08,568 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:40:08,568 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-11 00:40:08,568 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:08,568 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:08,571 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:40:08,573 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:40:08,573 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:40:08,576 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:40:08,582 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-01-11 00:40:09,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-01-11 00:40:09,215 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-01-11 00:40:09,486 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-11 00:40:09,486 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-01-11 00:40:09,490 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-01-11 00:40:09,748 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-01-11 00:40:09,748 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-01-11 00:40:09,752 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:40:09,752 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:09,752 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:09,754 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-11 00:40:09,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:09,760 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-11 00:40:09,771 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-01-11 00:40:09,772 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-01-11 00:40:09,772 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-11 00:40:09,772 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-11 00:40:09,772 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-11 00:40:09,772 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-11 00:40:09,774 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-11 00:40:09,778 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-11 00:40:09,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:09,920 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-01-11 00:40:09,924 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-11 00:40:09,927 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#16](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-01-11 00:40:09,929 [ scc.config] DEBUG Found github.token
2026-01-11 00:40:09,929 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-01-11 00:40:09,929 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-11 00:40:09,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:09,935 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-11 00:40:09,948 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-01-11 00:40:09,948 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-01-11 00:40:09,948 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-01-11 00:40:09,948 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-11 00:40:09,949 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-11 00:40:09,951 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-11 00:40:09,956 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-01-11 00:40:10,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:10,316 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-01-11 00:40:10,319 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-01-11 00:40:10,322 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#16](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-01-11 00:40:10,324 [ scc.config] DEBUG Found github.token
2026-01-11 00:40:10,324 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-01-11 00:40:10,324 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:40:10,361 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:10,361 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:10,363 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:40:10,398 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:40:10,402 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd3169e650> has no local changes
2026-01-11 00:40:10,402 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:40:10,408 [ scc.git] DEBUG [detached HEAD ed3ab10] merge master -Dorg -Ssuccess-only
2026-01-11 00:40:10,408 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:40:10,408 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:40:10,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-01-11 00:40:11,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-01-11 00:40:11,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-11 00:40:12,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:12,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:13,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-01-11 00:40:13,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:13,832 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:40:14,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-01-11 00:40:14,329 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:40:14,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-11 00:40:15,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:15,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:16,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-01-11 00:40:17,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:17,111 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-11 00:40:17,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-01-11 00:40:17,592 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:40:18,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-11 00:40:18,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:19,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:19,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-01-11 00:40:20,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:20,170 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-11 00:40:20,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-01-11 00:40:21,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-01-11 00:40:21,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-01-11 00:40:22,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-01-11 00:40:22,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-01-11 00:40:23,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-01-11 00:40:23,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-01-11 00:40:23,775 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:40:23,775 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-11 00:40:23,775 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:23,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:23,778 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:40:23,780 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:40:23,780 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:40:23,783 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:40:23,786 [ scc.git] DEBUG Already up to date.
2026-01-11 00:40:23,786 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-01-11 00:40:24,065 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-11 00:40:24,065 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-01-11 00:40:24,069 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-01-11 00:40:24,319 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-11 00:40:24,319 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-01-11 00:40:24,323 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-01-11 00:40:24,577 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-01-11 00:40:24,577 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-01-11 00:40:24,581 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:40:24,581 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:24,581 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:24,583 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-11 00:40:24,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:24,588 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-01-11 00:40:24,595 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:24,598 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-01-11 00:40:24,598 [ scc.git] DEBUG package.json | 2 +-
2026-01-11 00:40:24,598 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-01-11 00:40:24,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:24,773 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-01-11 00:40:24,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:24,778 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-01-11 00:40:24,786 [ scc.git] DEBUG Auto-merging package-lock.json
2026-01-11 00:40:24,786 [ scc.git] DEBUG Auto-merging package.json
2026-01-11 00:40:24,787 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:24,790 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-01-11 00:40:24,790 [ scc.git] DEBUG package.json | 2 +-
2026-01-11 00:40:24,790 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-01-11 00:40:25,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:25,170 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-11 00:40:25,172 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:25,174 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-01-11 00:40:25,182 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:25,184 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:40:25,184 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:40:25,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:25,895 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:40:25,931 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:25,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:25,933 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:40:25,969 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:40:25,972 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd31659050> has no local changes
2026-01-11 00:40:25,972 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:40:25,978 [ scc.git] DEBUG [detached HEAD 594e4ca] merge master -Dorg -Ssuccess-only
2026-01-11 00:40:25,978 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:40:25,978 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:40:26,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-01-11 00:40:27,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-01-11 00:40:27,045 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:40:27,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-11 00:40:28,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:28,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:29,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-01-11 00:40:29,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:29,606 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:40:29,606 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:40:29,606 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-11 00:40:29,606 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:29,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:29,609 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:40:29,611 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:40:29,611 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:40:29,614 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:40:29,617 [ scc.git] DEBUG Already up to date.
2026-01-11 00:40:29,617 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-01-11 00:40:29,896 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-01-11 00:40:29,896 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-01-11 00:40:29,900 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:40:29,900 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:29,900 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:29,902 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-11 00:40:29,904 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:29,906 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-01-11 00:40:29,912 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:29,915 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:40:29,915 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:40:30,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:30,047 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:40:30,084 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:30,084 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:30,086 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:40:30,122 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:40:30,125 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd316baf50> has no local changes
2026-01-11 00:40:30,125 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:40:30,131 [ scc.git] DEBUG [detached HEAD bcd1ea8] merge master -Dorg -Ssuccess-only
2026-01-11 00:40:30,131 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:40:30,131 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:40:30,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-01-11 00:40:31,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-01-11 00:40:31,111 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:40:31,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-11 00:40:32,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:32,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:33,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-11 00:40:33,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:34,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-01-11 00:40:34,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-01-11 00:40:34,753 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:40:35,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-01-11 00:40:35,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-01-11 00:40:36,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-11 00:40:36,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:37,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:37,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-11 00:40:38,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:38,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-01-11 00:40:39,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-01-11 00:40:39,035 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-01-11 00:40:39,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-01-11 00:40:39,523 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:40:39,523 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-11 00:40:39,524 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:39,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:39,526 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:40:39,528 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:40:39,528 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:40:39,531 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:40:39,534 [ scc.git] DEBUG Already up to date.
2026-01-11 00:40:39,534 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-01-11 00:40:39,805 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-11 00:40:39,805 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-01-11 00:40:39,809 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-01-11 00:40:40,062 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-01-11 00:40:40,062 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-01-11 00:40:40,066 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:40:40,066 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:40,067 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:40,069 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-11 00:40:40,071 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:40,073 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-01-11 00:40:40,080 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:40,083 [ scc.git] DEBUG setup.py | 4 +-
2026-01-11 00:40:40,083 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-01-11 00:40:40,083 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-01-11 00:40:40,083 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-01-11 00:40:40,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:40,219 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-01-11 00:40:40,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:40,224 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-01-11 00:40:40,231 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:40,233 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:40:40,233 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:40:40,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:40,621 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:40:40,658 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:40,658 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:40,660 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:40:40,696 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:40:40,699 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd32805b10> has no local changes
2026-01-11 00:40:40,699 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:40:40,704 [ scc.git] DEBUG [detached HEAD 427d97a] merge master -Dorg -Ssuccess-only
2026-01-11 00:40:40,705 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:40:40,705 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:40:41,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-01-11 00:40:41,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-01-11 00:40:41,656 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:40:42,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-11 00:40:42,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:43,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:43,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-01-11 00:40:44,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:44,248 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:40:44,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-01-11 00:40:45,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-01-11 00:40:45,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-11 00:40:46,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:46,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-01-11 00:40:47,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:40:47,272 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-11 00:40:47,272 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:40:47,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-11 00:40:47,272 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:47,273 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:47,275 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:40:47,277 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:40:47,277 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:40:47,280 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:40:47,283 [ scc.git] DEBUG Already up to date.
2026-01-11 00:40:47,283 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-11 00:40:47,581 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-11 00:40:47,581 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-11 00:40:47,585 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-11 00:40:47,838 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-01-11 00:40:47,838 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-11 00:40:47,842 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:40:47,842 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:47,842 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:47,845 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-11 00:40:47,847 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:47,849 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-11 00:40:47,857 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG Auto-merging setup.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-01-11 00:40:47,857 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-11 00:40:47,857 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-11 00:40:47,860 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-11 00:40:47,864 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-01-11 00:40:48,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:48,009 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-01-11 00:40:48,012 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-01-11 00:40:48,014 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#16](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/consoleText) for more details.
Possible conflicts:
- Upstream changes
- setup.py
- omero_signup/signup_settings.py
- omero_signup/urls.py
- omero_signup/views.py
--conflicts
2026-01-11 00:40:48,016 [ scc.config] DEBUG Found github.token
2026-01-11 00:40:48,016 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-01-11 00:40:48,016 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-11 00:40:48,019 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:48,021 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-01-11 00:40:48,027 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:40:48,029 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:40:48,029 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:40:48,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:40:48,412 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:40:48,449 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:48,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:48,451 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:40:48,486 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:40:48,490 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd316c8690> has no local changes
2026-01-11 00:40:48,490 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:40:48,495 [ scc.git] DEBUG [detached HEAD 24a5f2f] merge master -Dorg -Ssuccess-only
2026-01-11 00:40:48,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:40:48,496 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:40:48,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-01-11 00:40:49,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-01-11 00:40:49,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-01-11 00:40:50,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-01-11 00:40:50,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-01-11 00:40:51,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:51,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:51,864 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:40:51,864 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-11 00:40:51,864 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:51,864 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:51,867 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:40:51,869 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:40:51,869 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:40:51,871 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:40:51,878 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-01-11 00:40:52,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-01-11 00:40:53,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-01-11 00:40:54,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-01-11 00:40:54,023 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:40:54,023 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:54,023 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:54,025 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:40:54,062 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:40:54,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:40:54,064 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:40:54,100 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:40:54,103 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd3287e590> has no local changes
2026-01-11 00:40:54,104 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:40:54,109 [ scc.git] DEBUG [detached HEAD 5a85dc6] merge master -Dorg -Ssuccess-only
2026-01-11 00:40:54,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:40:54,109 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:40:54,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-01-11 00:40:55,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-01-11 00:40:55,253 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:40:55,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-11 00:40:56,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:40:58,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:40:59,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-01-11 00:41:00,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:41:00,198 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:00,198 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:41:00,198 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-11 00:41:00,198 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:00,198 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:00,201 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:41:00,203 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:41:00,203 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:41:00,205 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:41:00,208 [ scc.git] DEBUG Already up to date.
2026-01-11 00:41:00,208 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-01-11 00:41:00,484 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-01-11 00:41:00,484 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-01-11 00:41:00,488 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:41:00,488 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:00,488 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:00,491 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-11 00:41:00,493 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:00,495 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-01-11 00:41:00,501 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:41:00,504 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:41:00,504 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:41:00,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:00,645 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:41:00,681 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:00,681 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:00,683 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:00,719 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:00,722 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd316eab10> has no local changes
2026-01-11 00:41:00,722 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:00,727 [ scc.git] DEBUG [detached HEAD cfd0ebc] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:00,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:00,728 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:41:01,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-01-11 00:41:01,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-01-11 00:41:01,627 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:41:02,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-11 00:41:02,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:41:03,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:41:03,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-01-11 00:41:04,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:41:04,398 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:04,398 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:41:04,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-11 00:41:04,398 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:04,398 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:04,401 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:41:04,403 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:41:04,403 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:41:04,406 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:41:04,413 [ scc.git] DEBUG Updating deab817..160d894
2026-01-11 00:41:05,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-01-11 00:41:05,098 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-01-11 00:41:05,363 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-01-11 00:41:05,363 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-01-11 00:41:05,367 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:41:05,367 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:05,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:05,369 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-11 00:41:05,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:05,374 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-01-11 00:41:05,381 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:41:05,384 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:41:05,384 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:41:05,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:05,532 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:41:05,570 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:05,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:05,572 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:05,609 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:05,612 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd3289b350> has no local changes
2026-01-11 00:41:05,612 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:05,618 [ scc.git] DEBUG [detached HEAD 88049f7] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:05,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:05,618 [ scc.git] INFO Overriding base-branch from master to main
2026-01-11 00:41:05,618 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:41:06,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-01-11 00:41:06,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-01-11 00:41:07,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-01-11 00:41:07,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-11 00:41:08,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:41:08,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:41:09,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-01-11 00:41:09,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:41:09,526 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-01-11 00:41:09,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-01-11 00:41:10,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-01-11 00:41:10,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-01-11 00:41:11,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-11 00:41:12,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:41:12,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-01-11 00:41:12,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:41:12,967 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-11 00:41:12,967 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:41:12,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-11 00:41:12,967 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:12,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:12,970 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-01-11 00:41:12,972 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:41:12,972 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-01-11 00:41:12,975 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-01-11 00:41:12,982 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-01-11 00:41:13,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-01-11 00:41:14,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-01-11 00:41:14,363 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-01-11 00:41:14,638 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-11 00:41:14,638 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-01-11 00:41:14,642 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-01-11 00:41:14,893 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-01-11 00:41:14,893 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-01-11 00:41:14,897 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:41:14,897 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:14,897 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:14,900 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-11 00:41:14,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:14,905 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-11 00:41:14,912 [ scc.git] DEBUG Auto-merging README.rst
2026-01-11 00:41:14,912 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-01-11 00:41:14,912 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-01-11 00:41:14,912 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-11 00:41:14,912 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-01-11 00:41:14,912 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-01-11 00:41:14,915 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-11 00:41:14,918 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-01-11 00:41:15,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:15,064 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-01-11 00:41:15,067 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-01-11 00:41:15,069 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#16](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-01-11 00:41:15,071 [ scc.config] DEBUG Found github.token
2026-01-11 00:41:15,071 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-01-11 00:41:15,071 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-11 00:41:15,074 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:15,076 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-01-11 00:41:15,083 [ scc.git] DEBUG Auto-merging README.rst
2026-01-11 00:41:15,083 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-01-11 00:41:15,084 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:41:15,087 [ scc.git] DEBUG README.rst | 3 +
2026-01-11 00:41:15,087 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-01-11 00:41:15,087 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-01-11 00:41:15,087 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-01-11 00:41:15,087 [ scc.git] DEBUG setup.py | 5 +-
2026-01-11 00:41:15,087 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-01-11 00:41:15,087 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-01-11 00:41:15,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:15,457 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:41:15,493 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:15,493 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:15,495 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:15,531 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:15,534 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd3289a090> has no local changes
2026-01-11 00:41:15,534 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:15,540 [ scc.git] DEBUG [detached HEAD d081cfa] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:15,541 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:15,541 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:41:15,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-01-11 00:41:16,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-01-11 00:41:16,457 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:41:17,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-11 00:41:17,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:41:18,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:41:18,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-01-11 00:41:19,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:41:19,026 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:19,027 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:41:19,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-11 00:41:19,027 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:19,027 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:19,029 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:41:19,031 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:41:19,032 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:41:19,034 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:41:19,037 [ scc.git] DEBUG Already up to date.
2026-01-11 00:41:19,037 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-01-11 00:41:19,308 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-01-11 00:41:19,308 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-01-11 00:41:19,313 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:41:19,313 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:19,313 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:19,315 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-11 00:41:19,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:19,320 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-01-11 00:41:19,326 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:41:19,328 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:41:19,328 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:41:19,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:19,499 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:41:19,535 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:19,535 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:19,537 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:19,573 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:19,576 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd31659ad0> has no local changes
2026-01-11 00:41:19,576 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:19,582 [ scc.git] DEBUG [detached HEAD 9e8dfcd] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:19,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:19,582 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:41:20,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-01-11 00:41:20,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-01-11 00:41:20,484 [ scc.repo] DEBUG # ... Include label: dependencies
2026-01-11 00:41:20,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-11 00:41:21,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-01-11 00:41:21,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-01-11 00:41:22,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-01-11 00:41:22,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-01-11 00:41:22,894 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:22,894 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:41:22,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-11 00:41:22,894 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:22,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:22,897 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:41:22,899 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:41:22,899 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:41:22,902 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:41:22,905 [ scc.git] DEBUG Already up to date.
2026-01-11 00:41:22,905 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-01-11 00:41:23,171 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-01-11 00:41:23,171 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-01-11 00:41:23,175 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:41:23,175 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:23,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:23,177 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-11 00:41:23,180 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:23,182 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-01-11 00:41:23,188 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-01-11 00:41:23,191 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-01-11 00:41:23,191 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-01-11 00:41:23,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:23,363 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:41:23,399 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:23,399 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:23,401 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:23,437 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:23,440 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd328051d0> has no local changes
2026-01-11 00:41:23,441 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:23,446 [ scc.git] DEBUG [detached HEAD f719bbe] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:23,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:23,447 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:41:23,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-01-11 00:41:23,772 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:41:23,772 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-11 00:41:23,772 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:23,772 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:23,774 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-01-11 00:41:23,777 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:41:23,777 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-01-11 00:41:23,779 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-01-11 00:41:23,782 [ scc.git] DEBUG Already up to date.
2026-01-11 00:41:23,782 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:41:23,782 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:23,782 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:23,784 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:41:23,819 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:23,819 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:23,821 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:23,855 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:23,858 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd31671010> has no local changes
2026-01-11 00:41:23,858 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:23,864 [ scc.git] DEBUG [detached HEAD baa2f07] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:23,864 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:23,864 [ scc.git] INFO Overriding base-branch from master to develop
2026-01-11 00:41:23,864 [ scc.repo] DEBUG ## PRs found:
2026-01-11 00:41:24,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-01-11 00:41:24,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-01-11 00:41:25,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-01-11 00:41:25,287 [ scc.repo] DEBUG ## Branches found:
2026-01-11 00:41:25,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-11 00:41:25,287 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:25,287 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:25,290 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-01-11 00:41:25,292 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-01-11 00:41:25,292 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-01-11 00:41:25,295 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-01-11 00:41:25,306 [ scc.git] DEBUG Updating 4b4c755..fb91f15
2026-01-11 00:41:25,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-01-11 00:41:26,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-01-11 00:41:27,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-01-11 00:41:27,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-01-11 00:41:28,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-01-11 00:41:29,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-01-11 00:41:29,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-01-11 00:41:29,683 [ scc.git] DEBUG ## Unique users: []
2026-01-11 00:41:29,683 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:29,683 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:29,685 [ scc.git] DEBUG Calling 'git submodule update'
2026-01-11 00:41:29,722 [ scc.git] DEBUG Get sha1 of %s
2026-01-11 00:41:29,722 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-01-11 00:41:29,724 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:29,760 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:29,765 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd30535990> has no local changes
2026-01-11 00:41:29,765 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:29,770 [ scc.git] DEBUG [detached HEAD 80f1c33] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:29,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:29,771 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-01-11 00:41:29,840 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-01-11 00:41:30,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:30,081 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-01-11 00:41:30,082 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-01-11 00:41:30,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:30,476 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-01-11 00:41:30,478 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-01-11 00:41:30,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:30,898 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-01-11 00:41:30,900 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-01-11 00:41:31,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:31,293 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-01-11 00:41:31,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:31,843 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-01-11 00:41:31,845 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-01-11 00:41:32,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:32,232 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-01-11 00:41:32,234 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-01-11 00:41:32,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:32,627 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-01-11 00:41:32,629 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-01-11 00:41:33,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:33,020 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-01-11 00:41:33,022 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-01-11 00:41:33,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:33,422 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-01-11 00:41:33,424 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-01-11 00:41:33,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:33,829 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-01-11 00:41:33,830 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-01-11 00:41:34,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:34,215 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-01-11 00:41:34,217 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-01-11 00:41:34,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:34,643 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-01-11 00:41:34,645 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-01-11 00:41:35,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:35,057 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-01-11 00:41:35,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:35,446 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-01-11 00:41:35,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:35,840 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-01-11 00:41:35,842 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-01-11 00:41:36,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:36,240 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-01-11 00:41:36,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:36,629 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-01-11 00:41:37,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:37,012 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-01-11 00:41:37,014 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-01-11 00:41:37,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:37,404 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-01-11 00:41:37,405 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-01-11 00:41:37,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:37,798 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-01-11 00:41:37,800 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-01-11 00:41:38,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:38,341 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-01-11 00:41:38,343 [ scc.config] DEBUG Found submodule.scripts.url
2026-01-11 00:41:38,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-01-11 00:41:38,930 [ scc.config] DEBUG Found submodule.scripts.branch
2026-01-11 00:41:38,930 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-01-11 00:41:39,004 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fdd3286bc50> has local changes
2026-01-11 00:41:39,004 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..37ea700
Previously merged:
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 174 will-moore 'Skip wells'
- PR 181 will-moore 'Add labels support for import'
- PR 186 jburel 'Create release from tag'
Conflicting PRs (not included):
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 619 will-moore 'OME-Zarr support' (stage: draft)
Updating 9cc36cde..ddcf816a
Previously merged:
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
- PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..fb91f15
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#16 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/16/)'
2026-01-11 00:41:39,015 [ scc.git] DEBUG [detached HEAD afa1994] merge master -Dorg -Ssuccess-only
2026-01-11 00:41:39,015 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-01-11 00:41:39,015 [ scc.merge] INFO Repository: ome/omero-plugins
2026-01-11 00:41:39,015 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,015 [ scc.merge] INFO
2026-01-11 00:41:39,015 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,015 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-01-11 00:41:39,015 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-01-11 00:41:39,015 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-01-11 00:41:39,015 [ scc.merge] INFO
2026-01-11 00:41:39,015 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-01-11 00:41:39,015 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,015 [ scc.merge] INFO
2026-01-11 00:41:39,016 [ scc.merge] INFO
2026-01-11 00:41:39,016 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-01-11 00:41:39,016 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-01-11 00:41:39,016 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,016 [ scc.merge] INFO
2026-01-11 00:41:39,016 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,016 [ scc.merge] INFO
2026-01-11 00:41:39,016 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-01-11 00:41:39,016 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-01-11 00:41:39,016 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-01-11 00:41:39,016 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-01-11 00:41:39,016 [ scc.merge] INFO
2026-01-11 00:41:39,016 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-01-11 00:41:39,016 [ scc.merge] INFO
2026-01-11 00:41:39,016 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-01-11 00:41:39,016 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (status: failure)
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft)
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-01-11 00:41:39,016 [ scc.merge] INFO Updating 11d3587..37ea700
2026-01-11 00:41:39,016 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:41:39,016 [ scc.merge] INFO
2026-01-11 00:41:39,016 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import'
2026-01-11 00:41:39,016 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-01-11 00:41:39,017 [ scc.merge] INFO
2026-01-11 00:41:39,017 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-01-11 00:41:39,017 [ scc.merge] INFO
2026-01-11 00:41:39,017 [ scc.merge] INFO Repository: ome/omero-figure
2026-01-11 00:41:39,017 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft)
2026-01-11 00:41:39,017 [ scc.merge] INFO Updating 9cc36cde..ddcf816a
2026-01-11 00:41:39,017 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:41:39,017 [ scc.merge] INFO
2026-01-11 00:41:39,017 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-01-11 00:41:39,017 [ scc.merge] INFO
2026-01-11 00:41:39,017 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-01-11 00:41:39,017 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,017 [ scc.merge] INFO
2026-01-11 00:41:39,017 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-01-11 00:41:39,017 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,017 [ scc.merge] INFO
2026-01-11 00:41:39,017 [ scc.merge] INFO Repository: ome/omero-gallery
2026-01-11 00:41:39,017 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,017 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-01-11 00:41:39,018 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-01-11 00:41:39,018 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-01-11 00:41:39,018 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Repository: ome/omero-mapr
2026-01-11 00:41:39,018 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-01-11 00:41:39,018 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-11 00:41:39,018 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,018 [ scc.merge] INFO
2026-01-11 00:41:39,018 [ scc.merge] INFO Repository: ome/omero-metadata
2026-01-11 00:41:39,019 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-01-11 00:41:39,019 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Repository: ome/omero-parade
2026-01-11 00:41:39,019 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-01-11 00:41:39,019 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-01-11 00:41:39,019 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Repository: ome/omero-rois
2026-01-11 00:41:39,019 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-01-11 00:41:39,019 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Repository: ome/omero-signup
2026-01-11 00:41:39,019 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-01-11 00:41:39,019 [ scc.merge] INFO
2026-01-11 00:41:39,019 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-01-11 00:41:39,019 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,019 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure)
2026-01-11 00:41:39,020 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-01-11 00:41:39,020 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Repository: ome/omero-upload
2026-01-11 00:41:39,020 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-01-11 00:41:39,020 [ scc.merge] INFO Updating deab817..160d894
2026-01-11 00:41:39,020 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-01-11 00:41:39,020 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-01-11 00:41:39,020 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-01-11 00:41:39,020 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Conflicting PRs (not included):
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-01-11 00:41:39,020 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-01-11 00:41:39,020 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Merged PRs:
2026-01-11 00:41:39,020 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,020 [ scc.merge] INFO
2026-01-11 00:41:39,020 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-01-11 00:41:39,021 [ scc.merge] INFO Already up to date.
2026-01-11 00:41:39,021 [ scc.merge] INFO
2026-01-11 00:41:39,021 [ scc.merge] INFO
2026-01-11 00:41:39,021 [ scc.merge] INFO Repository: ome/scripts
2026-01-11 00:41:39,021 [ scc.merge] INFO Excluded PRs:
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-01-11 00:41:39,021 [ scc.merge] INFO Updating 4b4c755..fb91f15
2026-01-11 00:41:39,021 [ scc.merge] INFO Previously merged:
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-01-11 00:41:39,021 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-01-11 00:41:39,021 [ scc.merge] INFO
2026-01-11 00:41:39,021 [ scc.merge] INFO
2026-01-11 00:41:39,021 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-01-11 00:41:39,021 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-01-11 00:41:39,023 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-01-11 00:41:39,025 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-01-11 00:41:39,027 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-01-11 00:41:39,029 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,031 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,032 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-01-11 00:41:39,032 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-01-11 00:41:39,034 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,036 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,036 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-01-11 00:41:39,036 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,038 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,038 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-01-11 00:41:39,038 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,040 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,040 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-01-11 00:41:39,040 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,042 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,042 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-01-11 00:41:39,042 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,044 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,044 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-01-11 00:41:39,044 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-01-11 00:41:39,046 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,048 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-01-11 00:41:39,049 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,051 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,051 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-01-11 00:41:39,051 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,053 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,053 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-01-11 00:41:39,053 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-01-11 00:41:39,055 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-01-11 00:41:39,057 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,059 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,059 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-01-11 00:41:39,059 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-01-11 00:41:39,061 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-01-11 00:41:39,063 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,065 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-01-11 00:41:39,065 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-01-11 00:41:39,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-01-11 00:41:39,067 [ scc.git] DEBUG Calling 'git remote'
2026-01-11 00:41:39,069 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.5-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD d5b7fc0] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 140f5db] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-01-11 00:42:25,637 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-01-11 00:42:35,366 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-01-11 00:42:37,897 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-11 00:42:42,549 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-01-11 00:43:23,176 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS
