Console Output
Skipping 197 KB..
Full LogI'
2026-02-23 00:47:43,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-02-23 00:47:43,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-02-23 00:47:44,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-23 00:47:44,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:47:45,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None
2026-02-23 00:47:45,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:47:45,790 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-02-23 00:47:45,790 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:47:45,790 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-23 00:47:45,790 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:47:45,790 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:45,793 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:47:45,795 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:47:45,795 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:47:45,798 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:47:45,801 [ scc.git] DEBUG Already up to date.
2026-02-23 00:47:45,801 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-02-23 00:47:46,067 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-23 00:47:46,067 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-02-23 00:47:46,071 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-02-23 00:47:46,319 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-23 00:47:46,319 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-02-23 00:47:46,323 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-02-23 00:47:46,575 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-02-23 00:47:46,575 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-02-23 00:47:46,580 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:47:46,580 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:47:46,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:46,582 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-23 00:47:46,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:46,588 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-02-23 00:47:46,595 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:47:46,598 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-02-23 00:47:46,598 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-02-23 00:47:46,598 [ scc.git] DEBUG requirements.txt | 2 +-
2026-02-23 00:47:46,598 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-02-23 00:47:46,598 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-02-23 00:47:46,599 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-02-23 00:47:46,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:47:46,740 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-23 00:47:46,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:46,745 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-02-23 00:47:46,752 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:47:46,755 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:47:46,755 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:47:47,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:47:47,138 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-23 00:47:47,141 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:47,143 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-23 00:47:47,150 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-02-23 00:47:47,150 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-02-23 00:47:47,150 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-23 00:47:47,150 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-23 00:47:47,153 [ scc.git] DEBUG Calling 'git reset --hard 54b681e4d20ca7953faa8f456c60a5ce6bcf2d6d'
2026-02-23 00:47:47,157 [ scc.git] DEBUG HEAD is now at 54b681e merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-02-23 00:47:47,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:47:47,540 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-02-23 00:47:47,542 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-02-23 00:47:47,545 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#66](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-02-23 00:47:47,547 [ scc.config] DEBUG Found github.token
2026-02-23 00:47:47,547 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-02-23 00:47:47,547 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:47:47,585 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:47:47,585 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:47,587 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:47:47,628 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:47:47,632 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111a562d0> has no local changes
2026-02-23 00:47:47,632 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:47:47,638 [ scc.git] DEBUG [detached HEAD 0eda66e] merge master -Dorg -Ssuccess-only
2026-02-23 00:47:47,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:47:47,638 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:47:48,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-02-23 00:47:48,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-02-23 00:47:49,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-02-23 00:47:49,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-23 00:47:50,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:47:50,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None
2026-02-23 00:47:50,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:47:50,981 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-23 00:47:51,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-02-23 00:47:52,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-02-23 00:47:52,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-23 00:47:53,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:47:53,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None
2026-02-23 00:47:54,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:47:54,049 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-23 00:47:54,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-02-23 00:47:55,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-02-23 00:47:55,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-23 00:47:56,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:47:56,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None
2026-02-23 00:47:57,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:47:57,106 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-23 00:47:57,106 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:47:57,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-23 00:47:57,106 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:47:57,106 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:57,109 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:47:57,111 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:47:57,111 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:47:57,114 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:47:57,120 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-02-23 00:47:57,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-02-23 00:47:57,841 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-02-23 00:47:58,119 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-23 00:47:58,119 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-02-23 00:47:58,122 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-02-23 00:47:58,380 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-23 00:47:58,380 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-02-23 00:47:58,384 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-02-23 00:47:58,640 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-02-23 00:47:58,641 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-02-23 00:47:58,645 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:47:58,645 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:47:58,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:58,647 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-23 00:47:58,651 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:58,654 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-23 00:47:58,666 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-02-23 00:47:58,666 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-02-23 00:47:58,666 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-23 00:47:58,666 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-23 00:47:58,666 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-23 00:47:58,666 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-23 00:47:58,669 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-23 00:47:58,673 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-23 00:47:58,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:47:58,814 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-02-23 00:47:58,818 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-23 00:47:58,821 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#66](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-02-23 00:47:58,823 [ scc.config] DEBUG Found github.token
2026-02-23 00:47:58,823 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-02-23 00:47:58,823 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-23 00:47:58,827 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:58,829 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-23 00:47:58,843 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-02-23 00:47:58,843 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-02-23 00:47:58,843 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-02-23 00:47:58,843 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-23 00:47:58,843 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-23 00:47:58,846 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-23 00:47:58,850 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-02-23 00:47:59,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:47:59,203 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-02-23 00:47:59,207 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-02-23 00:47:59,209 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#66](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-02-23 00:47:59,211 [ scc.config] DEBUG Found github.token
2026-02-23 00:47:59,211 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-02-23 00:47:59,211 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-23 00:47:59,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:59,216 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-02-23 00:47:59,224 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:47:59,228 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-02-23 00:47:59,228 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-02-23 00:47:59,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:47:59,600 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:47:59,638 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:47:59,639 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:47:59,641 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:47:59,678 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:47:59,681 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff113bfb650> has no local changes
2026-02-23 00:47:59,681 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:47:59,688 [ scc.git] DEBUG [detached HEAD 4a80189] merge master -Dorg -Ssuccess-only
2026-02-23 00:47:59,688 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:47:59,688 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:00,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-02-23 00:48:00,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-02-23 00:48:01,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-23 00:48:01,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:02,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:03,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None
2026-02-23 00:48:03,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:03,426 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-23 00:48:03,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-02-23 00:48:03,928 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:48:04,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-23 00:48:04,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:05,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:06,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None
2026-02-23 00:48:06,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:06,533 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-23 00:48:07,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-02-23 00:48:07,001 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:48:07,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-23 00:48:08,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:08,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:09,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None
2026-02-23 00:48:09,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:09,833 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-23 00:48:10,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-02-23 00:48:10,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-02-23 00:48:11,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-02-23 00:48:11,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-02-23 00:48:12,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-02-23 00:48:12,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-02-23 00:48:13,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-02-23 00:48:13,183 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:48:13,183 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-23 00:48:13,183 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:13,184 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:13,186 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:48:13,189 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:48:13,189 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:48:13,192 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:48:13,195 [ scc.git] DEBUG Already up to date.
2026-02-23 00:48:13,195 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-02-23 00:48:13,464 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-23 00:48:13,464 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-02-23 00:48:13,468 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-02-23 00:48:13,945 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-23 00:48:13,945 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-02-23 00:48:13,949 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-02-23 00:48:14,312 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-02-23 00:48:14,312 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-02-23 00:48:14,316 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:48:14,316 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:14,316 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:14,318 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-23 00:48:14,321 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:14,323 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-02-23 00:48:14,330 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:14,333 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-02-23 00:48:14,333 [ scc.git] DEBUG package.json | 2 +-
2026-02-23 00:48:14,333 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-02-23 00:48:14,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:14,479 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-02-23 00:48:14,482 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:14,484 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-02-23 00:48:14,493 [ scc.git] DEBUG Auto-merging package-lock.json
2026-02-23 00:48:14,493 [ scc.git] DEBUG Auto-merging package.json
2026-02-23 00:48:14,494 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:14,497 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-02-23 00:48:14,497 [ scc.git] DEBUG package.json | 2 +-
2026-02-23 00:48:14,497 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-02-23 00:48:14,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:14,866 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-23 00:48:14,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:14,871 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-02-23 00:48:14,879 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:14,881 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:48:14,882 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:48:15,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:15,276 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:48:15,314 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:15,314 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:15,316 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:48:15,352 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:48:15,356 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111a5e150> has no local changes
2026-02-23 00:48:15,356 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:48:15,362 [ scc.git] DEBUG [detached HEAD f727879] merge master -Dorg -Ssuccess-only
2026-02-23 00:48:15,362 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:48:15,362 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:15,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-02-23 00:48:16,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-02-23 00:48:16,267 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:48:16,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-23 00:48:17,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:17,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:18,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None
2026-02-23 00:48:18,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:18,833 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:48:18,833 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:48:18,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-23 00:48:18,833 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:18,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:18,836 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:48:18,838 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:48:18,838 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:48:18,841 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:48:18,844 [ scc.git] DEBUG Already up to date.
2026-02-23 00:48:18,844 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-02-23 00:48:19,103 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-02-23 00:48:19,104 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-02-23 00:48:19,108 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:48:19,108 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:19,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:19,110 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-23 00:48:19,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:19,115 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-02-23 00:48:19,121 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:19,124 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:48:19,124 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:48:19,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:19,285 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:48:19,323 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:19,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:19,325 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:48:19,363 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:48:19,366 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111a68490> has no local changes
2026-02-23 00:48:19,366 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:48:19,371 [ scc.git] DEBUG [detached HEAD d22999a] merge master -Dorg -Ssuccess-only
2026-02-23 00:48:19,371 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:48:19,371 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:19,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-02-23 00:48:20,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None
2026-02-23 00:48:20,310 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:48:20,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-23 00:48:21,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:21,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:22,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-23 00:48:22,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:23,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None
2026-02-23 00:48:23,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None
2026-02-23 00:48:23,827 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:48:24,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None
2026-02-23 00:48:24,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None
2026-02-23 00:48:25,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-23 00:48:25,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:26,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:26,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-23 00:48:27,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:27,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None
2026-02-23 00:48:28,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None
2026-02-23 00:48:28,004 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions'
2026-02-23 00:48:28,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-02-23 00:48:28,482 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:48:28,482 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-23 00:48:28,482 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:28,482 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:28,485 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:48:28,487 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:48:28,487 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:48:28,489 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:48:28,492 [ scc.git] DEBUG Already up to date.
2026-02-23 00:48:28,492 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head'
2026-02-23 00:48:28,762 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-23 00:48:28,762 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD
2026-02-23 00:48:28,766 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head'
2026-02-23 00:48:29,020 [ scc.git] DEBUG From https://github.com/ome/omero-rois
2026-02-23 00:48:29,020 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD
2026-02-23 00:48:29,024 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:48:29,025 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:29,025 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:29,027 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-23 00:48:29,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:29,032 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3'
2026-02-23 00:48:29,039 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:29,042 [ scc.git] DEBUG setup.py | 4 +-
2026-02-23 00:48:29,042 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 +
2026-02-23 00:48:29,042 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++--
2026-02-23 00:48:29,042 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-)
2026-02-23 00:48:29,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:29,189 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301'
2026-02-23 00:48:29,192 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:29,194 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301'
2026-02-23 00:48:29,201 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:29,203 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:48:29,203 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:48:29,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:29,594 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:48:29,632 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:29,632 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:29,634 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:48:29,670 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:48:29,673 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111a7ac10> has no local changes
2026-02-23 00:48:29,673 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:48:29,679 [ scc.git] DEBUG [detached HEAD 442cc05] merge master -Dorg -Ssuccess-only
2026-02-23 00:48:29,679 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:48:29,679 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:30,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-02-23 00:48:30,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-02-23 00:48:30,728 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:48:31,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-23 00:48:31,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:32,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:32,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None
2026-02-23 00:48:33,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:33,254 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:48:33,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-02-23 00:48:34,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-02-23 00:48:34,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-23 00:48:35,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:35,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None
2026-02-23 00:48:36,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:36,260 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-23 00:48:36,260 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:48:36,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-23 00:48:36,260 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:36,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:36,263 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:48:36,265 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:48:36,265 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:48:36,268 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:48:36,270 [ scc.git] DEBUG Already up to date.
2026-02-23 00:48:36,270 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-23 00:48:36,671 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-23 00:48:36,672 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-23 00:48:36,678 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-23 00:48:37,037 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-02-23 00:48:37,038 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-23 00:48:37,042 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:48:37,042 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:37,042 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:37,044 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-23 00:48:37,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:37,049 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-23 00:48:37,057 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG Auto-merging setup.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-02-23 00:48:37,057 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-23 00:48:37,057 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-23 00:48:37,060 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-23 00:48:37,063 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-02-23 00:48:37,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:37,217 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-02-23 00:48:37,220 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-02-23 00:48:37,223 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#66](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/urls.py
- setup.py
- omero_signup/views.py
--conflicts
2026-02-23 00:48:37,225 [ scc.config] DEBUG Found github.token
2026-02-23 00:48:37,225 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-02-23 00:48:37,225 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-23 00:48:37,228 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:37,230 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-02-23 00:48:37,236 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:37,239 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:48:37,239 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:48:37,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:37,632 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:48:37,669 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:37,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:37,672 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:48:37,708 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:48:37,711 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111a68610> has no local changes
2026-02-23 00:48:37,711 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:48:37,717 [ scc.git] DEBUG [detached HEAD a8b37ed] merge master -Dorg -Ssuccess-only
2026-02-23 00:48:37,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:48:37,717 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:38,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-02-23 00:48:38,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-02-23 00:48:39,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-02-23 00:48:39,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-02-23 00:48:40,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-02-23 00:48:40,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:41,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None
2026-02-23 00:48:41,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:41,508 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-02-23 00:48:41,508 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:48:41,508 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-23 00:48:41,508 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:41,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:41,511 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:48:41,513 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:48:41,513 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:48:41,516 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:48:41,523 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-02-23 00:48:42,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-02-23 00:48:42,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-02-23 00:48:43,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-02-23 00:48:43,721 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-02-23 00:48:43,987 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-02-23 00:48:43,987 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-02-23 00:48:43,991 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:48:43,991 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:43,991 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:43,993 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-02-23 00:48:43,996 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:43,998 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-02-23 00:48:44,005 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-02-23 00:48:44,005 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:44,008 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-02-23 00:48:44,008 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-02-23 00:48:44,009 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-02-23 00:48:44,009 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-02-23 00:48:44,009 [ scc.git] DEBUG ms/test | 2 ++
2026-02-23 00:48:44,009 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-02-23 00:48:44,009 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-02-23 00:48:44,009 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-02-23 00:48:44,009 [ scc.git] DEBUG create mode 100755 ms/test
2026-02-23 00:48:44,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:44,149 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:48:44,188 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:44,188 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:44,191 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:48:44,229 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:48:44,232 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111ad3490> has no local changes
2026-02-23 00:48:44,232 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:48:44,238 [ scc.git] DEBUG [detached HEAD 93eda94] merge master -Dorg -Ssuccess-only
2026-02-23 00:48:44,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:48:44,238 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:44,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-02-23 00:48:45,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-02-23 00:48:45,166 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:48:45,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-23 00:48:46,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:46,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:47,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None
2026-02-23 00:48:47,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:47,762 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:48:47,762 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:48:47,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-23 00:48:47,763 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:47,763 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:47,765 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:48:47,768 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:48:47,768 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:48:47,770 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:48:47,773 [ scc.git] DEBUG Already up to date.
2026-02-23 00:48:47,773 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-02-23 00:48:48,431 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-02-23 00:48:48,432 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-02-23 00:48:48,436 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:48:48,436 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:48,436 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:48,439 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-23 00:48:48,441 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:48,443 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-02-23 00:48:48,449 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:48,452 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:48:48,452 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:48:48,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:48,635 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:48:48,672 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:48,672 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:48,674 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:48:48,710 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:48:48,713 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111acdb50> has no local changes
2026-02-23 00:48:48,713 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:48:48,719 [ scc.git] DEBUG [detached HEAD c3cefdb] merge master -Dorg -Ssuccess-only
2026-02-23 00:48:48,719 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:48:48,719 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:49,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-02-23 00:48:49,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-02-23 00:48:49,659 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:48:50,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-23 00:48:50,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:51,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:51,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None
2026-02-23 00:48:52,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:52,326 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:48:52,326 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:48:52,326 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-23 00:48:52,326 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:52,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:52,329 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:48:52,331 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:48:52,332 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:48:52,334 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:48:52,341 [ scc.git] DEBUG Updating deab817..160d894
2026-02-23 00:48:53,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-02-23 00:48:53,027 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-02-23 00:48:53,313 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-02-23 00:48:53,313 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-02-23 00:48:53,317 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:48:53,318 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:53,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:53,320 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-23 00:48:53,322 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:53,324 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-02-23 00:48:53,330 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:48:53,333 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:48:53,333 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:48:53,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:48:53,471 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:48:53,508 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:48:53,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:48:53,510 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:48:53,546 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:48:53,549 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff113c71b10> has no local changes
2026-02-23 00:48:53,550 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:48:53,555 [ scc.git] DEBUG [detached HEAD 38aab91] merge master -Dorg -Ssuccess-only
2026-02-23 00:48:53,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:48:53,556 [ scc.git] INFO Overriding base-branch from master to main
2026-02-23 00:48:53,556 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:48:54,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-02-23 00:48:54,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-02-23 00:48:55,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-02-23 00:48:55,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-23 00:48:56,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:48:56,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:48:57,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None
2026-02-23 00:48:57,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:48:57,466 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-02-23 00:48:57,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-02-23 00:48:58,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-02-23 00:48:58,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-02-23 00:48:59,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-23 00:48:59,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:49:00,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None
2026-02-23 00:49:00,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:49:00,774 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-23 00:49:00,774 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:49:00,774 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-23 00:49:00,774 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:00,774 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:00,777 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-02-23 00:49:00,779 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:49:00,779 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-02-23 00:49:00,782 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-02-23 00:49:00,788 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-02-23 00:49:01,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-02-23 00:49:02,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-02-23 00:49:02,287 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-02-23 00:49:02,563 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-23 00:49:02,564 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-02-23 00:49:02,568 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-02-23 00:49:02,968 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-02-23 00:49:02,968 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-02-23 00:49:02,973 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:49:02,973 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:02,973 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:02,976 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-23 00:49:02,979 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:02,981 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-23 00:49:02,988 [ scc.git] DEBUG Auto-merging README.rst
2026-02-23 00:49:02,989 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-02-23 00:49:02,989 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-02-23 00:49:02,989 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-23 00:49:02,989 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-02-23 00:49:02,989 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-02-23 00:49:02,991 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-23 00:49:02,995 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-02-23 00:49:03,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:03,154 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-02-23 00:49:03,157 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-02-23 00:49:03,160 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#66](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-02-23 00:49:03,162 [ scc.config] DEBUG Found github.token
2026-02-23 00:49:03,162 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-02-23 00:49:03,162 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-23 00:49:03,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:03,167 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-02-23 00:49:03,174 [ scc.git] DEBUG Auto-merging README.rst
2026-02-23 00:49:03,174 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-02-23 00:49:03,175 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:49:03,178 [ scc.git] DEBUG README.rst | 3 +
2026-02-23 00:49:03,178 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-02-23 00:49:03,178 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-02-23 00:49:03,178 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-02-23 00:49:03,178 [ scc.git] DEBUG setup.py | 5 +-
2026-02-23 00:49:03,178 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-02-23 00:49:03,178 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-02-23 00:49:03,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:03,546 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:49:03,583 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:03,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:03,585 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:49:03,621 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:49:03,624 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111a6f010> has no local changes
2026-02-23 00:49:03,624 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:49:03,630 [ scc.git] DEBUG [detached HEAD 96422f9] merge master -Dorg -Ssuccess-only
2026-02-23 00:49:03,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:03,630 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:49:04,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-02-23 00:49:04,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-02-23 00:49:04,560 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:49:05,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-23 00:49:05,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:49:06,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:49:06,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None
2026-02-23 00:49:07,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:49:07,151 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:07,151 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:49:07,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-23 00:49:07,151 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:07,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:07,154 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:49:07,156 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:49:07,156 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:49:07,159 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:49:07,162 [ scc.git] DEBUG Already up to date.
2026-02-23 00:49:07,162 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-02-23 00:49:07,439 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-02-23 00:49:07,439 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-02-23 00:49:07,443 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:49:07,443 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:07,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:07,445 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-23 00:49:07,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:07,449 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-02-23 00:49:07,455 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:49:07,458 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:49:07,458 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:49:07,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:07,606 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:49:07,645 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:07,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:07,647 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:49:07,684 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:49:07,687 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff113c1d2d0> has no local changes
2026-02-23 00:49:07,687 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:49:07,693 [ scc.git] DEBUG [detached HEAD 9cd9dc9] merge master -Dorg -Ssuccess-only
2026-02-23 00:49:07,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:07,693 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:49:08,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-02-23 00:49:08,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-02-23 00:49:08,579 [ scc.repo] DEBUG # ... Include label: dependencies
2026-02-23 00:49:09,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-23 00:49:09,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-02-23 00:49:10,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-02-23 00:49:10,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None
2026-02-23 00:49:11,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-02-23 00:49:11,121 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:11,121 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:49:11,121 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-23 00:49:11,121 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:11,121 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:11,123 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:49:11,126 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:49:11,126 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:49:11,128 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:49:11,131 [ scc.git] DEBUG Already up to date.
2026-02-23 00:49:11,131 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-02-23 00:49:11,400 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-02-23 00:49:11,400 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-02-23 00:49:11,404 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:49:11,404 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:11,404 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:11,406 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-23 00:49:11,409 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:11,411 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-02-23 00:49:11,418 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-02-23 00:49:11,420 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-02-23 00:49:11,420 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-02-23 00:49:11,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:11,571 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:49:11,608 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:11,608 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:11,610 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:49:11,646 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:49:11,649 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff111b1b710> has no local changes
2026-02-23 00:49:11,649 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:49:11,654 [ scc.git] DEBUG [detached HEAD 6f443e8] merge master -Dorg -Ssuccess-only
2026-02-23 00:49:11,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:11,655 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:49:12,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-02-23 00:49:12,018 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:49:12,018 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-23 00:49:12,018 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:12,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:12,021 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-02-23 00:49:12,023 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:49:12,023 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-02-23 00:49:12,026 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-02-23 00:49:12,029 [ scc.git] DEBUG Already up to date.
2026-02-23 00:49:12,029 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:49:12,029 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:12,029 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:12,031 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:49:12,068 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:12,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:12,070 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:49:12,106 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:49:12,109 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff113c71e90> has no local changes
2026-02-23 00:49:12,109 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:49:12,115 [ scc.git] DEBUG [detached HEAD 0b99a99] merge master -Dorg -Ssuccess-only
2026-02-23 00:49:12,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:12,115 [ scc.git] INFO Overriding base-branch from master to develop
2026-02-23 00:49:12,115 [ scc.repo] DEBUG ## PRs found:
2026-02-23 00:49:12,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-02-23 00:49:13,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None
2026-02-23 00:49:13,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None
2026-02-23 00:49:13,520 [ scc.repo] DEBUG ## Branches found:
2026-02-23 00:49:13,520 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-23 00:49:13,520 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:13,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:13,522 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-02-23 00:49:13,524 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-02-23 00:49:13,525 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-02-23 00:49:13,527 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-02-23 00:49:13,539 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-02-23 00:49:14,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-02-23 00:49:14,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-02-23 00:49:15,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-02-23 00:49:16,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-02-23 00:49:16,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-02-23 00:49:17,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-02-23 00:49:18,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-02-23 00:49:18,290 [ scc.git] DEBUG ## Unique users: []
2026-02-23 00:49:18,290 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:18,290 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:18,293 [ scc.git] DEBUG Calling 'git submodule update'
2026-02-23 00:49:18,331 [ scc.git] DEBUG Get sha1 of %s
2026-02-23 00:49:18,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-02-23 00:49:18,333 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:49:18,369 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:49:18,373 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff113b6d290> has no local changes
2026-02-23 00:49:18,373 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:49:18,378 [ scc.git] DEBUG [detached HEAD a8afb25] merge master -Dorg -Ssuccess-only
2026-02-23 00:49:18,379 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:18,379 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-02-23 00:49:18,448 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-02-23 00:49:18,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:18,691 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-02-23 00:49:18,693 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-02-23 00:49:19,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:19,082 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-02-23 00:49:19,084 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-02-23 00:49:19,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:19,471 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-02-23 00:49:19,473 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-02-23 00:49:19,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:19,892 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-02-23 00:49:20,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:20,295 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-02-23 00:49:20,297 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-02-23 00:49:20,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:20,689 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-02-23 00:49:20,691 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-02-23 00:49:21,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:21,095 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-02-23 00:49:21,097 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-02-23 00:49:21,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:21,480 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-02-23 00:49:21,482 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-02-23 00:49:21,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:21,872 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-02-23 00:49:21,874 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-02-23 00:49:22,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:22,278 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-02-23 00:49:22,280 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-02-23 00:49:22,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:22,675 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-02-23 00:49:22,677 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-02-23 00:49:23,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:23,062 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-02-23 00:49:23,064 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-02-23 00:49:23,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:23,456 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-02-23 00:49:23,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:23,857 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-02-23 00:49:24,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:24,264 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-02-23 00:49:24,266 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-02-23 00:49:24,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:24,665 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-02-23 00:49:25,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:25,066 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-02-23 00:49:25,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:25,606 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-02-23 00:49:25,607 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-02-23 00:49:25,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:25,997 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-02-23 00:49:25,999 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-02-23 00:49:26,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:26,397 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-02-23 00:49:26,399 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-02-23 00:49:26,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:26,798 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-02-23 00:49:26,800 [ scc.config] DEBUG Found submodule.scripts.url
2026-02-23 00:49:27,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-02-23 00:49:27,190 [ scc.config] DEBUG Found submodule.scripts.branch
2026-02-23 00:49:27,190 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-02-23 00:49:27,268 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff113c40c10> has local changes
2026-02-23 00:49:27,268 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9530c10
Previously merged:
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..e241dc01
Previously merged:
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 662 will-moore 'Export script runnable without OMERO'
- PR 663 will-moore 'Zarr'
- PR 666 will-moore 'Standalone app'
- PR 667 Tom-TBT 'Label suggestion interface'
Conflicting PRs (not included):
- PR 664 Nirkan 'Handle many channels '
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..5e2de43
Previously merged:
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 465 will-moore 'Save as Figure'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 499 dependabot[bot] 'Bump nanoid and mocha'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 513 jburel 'Bump Python version'
Conflicting PRs (not included):
- PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Already up to date.
Merged PRs:
- PR 33 jo-mueller 'Add roi to array functions'
- PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Excluded PRs:
- PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#66 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/66/)'
2026-02-23 00:49:27,279 [ scc.git] DEBUG [detached HEAD ca9bba4] merge master -Dorg -Ssuccess-only
2026-02-23 00:49:27,279 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-02-23 00:49:27,279 [ scc.merge] INFO Repository: ome/omero-plugins
2026-02-23 00:49:27,279 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,279 [ scc.merge] INFO
2026-02-23 00:49:27,279 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,279 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-02-23 00:49:27,279 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-02-23 00:49:27,279 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-02-23 00:49:27,279 [ scc.merge] INFO
2026-02-23 00:49:27,279 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-02-23 00:49:27,279 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,279 [ scc.merge] INFO
2026-02-23 00:49:27,279 [ scc.merge] INFO
2026-02-23 00:49:27,279 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-02-23 00:49:27,279 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-02-23 00:49:27,280 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,280 [ scc.merge] INFO
2026-02-23 00:49:27,280 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,280 [ scc.merge] INFO
2026-02-23 00:49:27,280 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-02-23 00:49:27,280 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-02-23 00:49:27,280 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-02-23 00:49:27,280 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-02-23 00:49:27,280 [ scc.merge] INFO
2026-02-23 00:49:27,280 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-02-23 00:49:27,280 [ scc.merge] INFO
2026-02-23 00:49:27,280 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-02-23 00:49:27,280 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-02-23 00:49:27,280 [ scc.merge] INFO Updating 11d3587..9530c10
2026-02-23 00:49:27,280 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-23 00:49:27,280 [ scc.merge] INFO
2026-02-23 00:49:27,280 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-02-23 00:49:27,280 [ scc.merge] INFO
2026-02-23 00:49:27,280 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-02-23 00:49:27,280 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-02-23 00:49:27,281 [ scc.merge] INFO
2026-02-23 00:49:27,281 [ scc.merge] INFO Repository: ome/omero-figure
2026-02-23 00:49:27,281 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-02-23 00:49:27,281 [ scc.merge] INFO Updating 9cc36cde..e241dc01
2026-02-23 00:49:27,281 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-23 00:49:27,281 [ scc.merge] INFO
2026-02-23 00:49:27,281 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 662 will-moore 'Export script runnable without OMERO'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-02-23 00:49:27,281 [ scc.merge] INFO
2026-02-23 00:49:27,281 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-02-23 00:49:27,281 [ scc.merge] INFO
2026-02-23 00:49:27,281 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-02-23 00:49:27,281 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,281 [ scc.merge] INFO
2026-02-23 00:49:27,281 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-02-23 00:49:27,281 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,281 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Repository: ome/omero-gallery
2026-02-23 00:49:27,282 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-02-23 00:49:27,282 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-02-23 00:49:27,282 [ scc.merge] INFO Updating 7a798ce..5e2de43
2026-02-23 00:49:27,282 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Repository: ome/omero-mapr
2026-02-23 00:49:27,282 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-02-23 00:49:27,282 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-02-23 00:49:27,282 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-23 00:49:27,282 [ scc.merge] INFO
2026-02-23 00:49:27,282 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Repository: ome/omero-metadata
2026-02-23 00:49:27,283 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-02-23 00:49:27,283 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Repository: ome/omero-parade
2026-02-23 00:49:27,283 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-02-23 00:49:27,283 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-02-23 00:49:27,283 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Repository: ome/omero-rois
2026-02-23 00:49:27,283 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-02-23 00:49:27,283 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions'
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Repository: ome/omero-signup
2026-02-23 00:49:27,283 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,283 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,283 [ scc.merge] INFO
2026-02-23 00:49:27,283 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-02-23 00:49:27,284 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-02-23 00:49:27,284 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-02-23 00:49:27,284 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Repository: ome/omero-upload
2026-02-23 00:49:27,284 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-02-23 00:49:27,284 [ scc.merge] INFO Updating deab817..160d894
2026-02-23 00:49:27,284 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-02-23 00:49:27,284 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-02-23 00:49:27,284 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-02-23 00:49:27,284 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Conflicting PRs (not included):
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-02-23 00:49:27,284 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,284 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,284 [ scc.merge] INFO
2026-02-23 00:49:27,284 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-02-23 00:49:27,285 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,285 [ scc.merge] INFO
2026-02-23 00:49:27,285 [ scc.merge] INFO Merged PRs:
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,285 [ scc.merge] INFO
2026-02-23 00:49:27,285 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-02-23 00:49:27,285 [ scc.merge] INFO Already up to date.
2026-02-23 00:49:27,285 [ scc.merge] INFO
2026-02-23 00:49:27,285 [ scc.merge] INFO
2026-02-23 00:49:27,285 [ scc.merge] INFO Repository: ome/scripts
2026-02-23 00:49:27,285 [ scc.merge] INFO Excluded PRs:
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn)
2026-02-23 00:49:27,285 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-02-23 00:49:27,285 [ scc.merge] INFO Previously merged:
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-02-23 00:49:27,285 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-02-23 00:49:27,285 [ scc.merge] INFO
2026-02-23 00:49:27,285 [ scc.merge] INFO
2026-02-23 00:49:27,285 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-02-23 00:49:27,285 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-02-23 00:49:27,287 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-02-23 00:49:27,289 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-02-23 00:49:27,291 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,293 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-02-23 00:49:27,294 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-02-23 00:49:27,296 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-02-23 00:49:27,298 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-02-23 00:49:27,300 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-02-23 00:49:27,302 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,304 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-02-23 00:49:27,304 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-02-23 00:49:27,306 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,308 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,308 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-02-23 00:49:27,308 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-02-23 00:49:27,310 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,312 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,312 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-02-23 00:49:27,313 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-02-23 00:49:27,315 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-02-23 00:49:27,317 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-02-23 00:49:27,319 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-02-23 00:49:27,321 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,323 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-02-23 00:49:27,323 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,325 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-02-23 00:49:27,325 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,327 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-02-23 00:49:27,327 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-02-23 00:49:27,329 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-02-23 00:49:27,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-02-23 00:49:27,331 [ scc.git] DEBUG Calling 'git remote'
2026-02-23 00:49:27,333 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 048429e] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 60673cc] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-02-23 00:50:13,860 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-02-23 00:50:23,062 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-02-23 00:50:25,501 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-23 00:50:30,175 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-02-23 00:51:10,792 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
