05:27:43Started by upstream project "Trigger" build number 24005:27:43originally caused by:
05:27:43 Started by user devspace05:27:43Running as SYSTEM
05:27:43Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
05:27:43The recommended git tool is: NONE
05:27:43No credentials specified
05:27:43 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
05:27:43Fetching changes from the remote Git repository
05:27:43 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
05:27:43Fetching upstream changes from https://github.com/ome/openmicroscopy.git05:27:43 > git --version # timeout=10
05:27:43 > git --version # 'git version 2.43.5'
05:27:43 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
05:27:45 > git rev-parse origin/develop^{commit} # timeout=10
05:27:45Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop)
05:27:45 > git config core.sparsecheckout # timeout=10
05:27:45 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30
05:27:45Commit message: "Merge pull request #6407 from will-moore/history_5.6.13"
05:27:45 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10
05:27:45Cleaning workspace
05:27:45 > git rev-parse --verify HEAD # timeout=10
05:27:45Resetting working tree
05:27:45 > git reset --hard # timeout=10
05:27:46 > git clean -fdx # timeout=10
05:27:46Copied 1 artifact from "OMERO-python-superbuild-build" build number 19405:27:46[OMERO-push] $ /bin/bash -xe /tmp/jenkins9158428564576870943.sh
05:27:46+ python3 -mvenv venv
05:27:48+ source /home/omero/workspace/OMERO-push/venv/bin/activate
05:27:48++ deactivate nondestructive
05:27:48++ '[' -n '' ']'
05:27:48++ '[' -n '' ']'
05:27:48++ '[' -n /bin/bash -o -n '' ']'
05:27:48++ hash -r
05:27:48++ '[' -n '' ']'
05:27:48++ unset VIRTUAL_ENV
05:27:48++ '[' '!' nondestructive = nondestructive ']'
05:27:48++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
05:27:48++ export VIRTUAL_ENV
05:27:48++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:27:48++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
05:27:48++ export PATH
05:27:48++ '[' -n '' ']'
05:27:48++ '[' -z '' ']'
05:27:48++ _OLD_VIRTUAL_PS1=
05:27:48++ PS1='(venv) '
05:27:48++ export PS1
05:27:48++ '[' -n /bin/bash -o -n '' ']'
05:27:48++ hash -r
05:27:48+ pip install -U pip
05:27:51Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2)
05:27:51+ pip install -U scc
05:27:52Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0)
05:27:52Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0)
05:27:52Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1)
05:27:52Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0)
05:27:52Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6)
05:27:52Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7)
05:27:52Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0)
05:27:52Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18)
05:27:52Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0)
05:27:52Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0)
05:27:52Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0)
05:27:52Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0)
05:27:52Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0)
05:27:52Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14)
05:27:52Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8)
05:27:52Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5)
05:27:52Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0)
05:27:52Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2)
05:27:52Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6)
05:27:52Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2)
05:27:52Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0)
05:27:52Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21)
05:27:52+ test -e src
05:27:52+ cd src
05:27:52++ git config github.user
05:27:52+ user=snoopycrimecop
05:27:52+ scc merge develop --no-ask --reset --shallow -S success-only
05:27:572024-10-08 05:27:57,786 [ scc.merge] INFO Merging Pull Request(s) based on develop
05:27:572024-10-08 05:27:57,787 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
05:27:572024-10-08 05:27:57,787 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
05:27:572024-10-08 05:27:57,787 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
05:27:572024-10-08 05:27:57,787 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
05:27:572024-10-08 05:27:57,787 [ scc.merge] INFO Excluding Pull Request(s) without successful status
05:28:282024-10-08 05:28:28,123 [ scc.merge] INFO Repository: ome/openmicroscopy
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO Excluded PRs:
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT)
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment)
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude)
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO Already up to date.
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO Merged PRs:
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6309 jburel 'add try block'
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies'
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method'
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16'
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies'
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches'
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API'
05:28:282024-10-08 05:28:28,124 [ scc.merge] INFO
05:28:28+ cp etc/omero.properties etc/omero.properties.bak
05:28:28+ rm etc/omero.properties
05:28:28+ touch etc/omero.properties
05:28:28++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
05:28:28+ ne=249
05:28:28++ sed -n 1,249p etc/omero.properties.bak
05:28:28+ line='##
05:28:28## omero.properties
05:28:28## ----------------
05:28:28##
05:28:28## DO NOT EDIT!
05:28:28##
05:28:28##
05:28:28## Any of these properties can be altered by using `omero config`. MODIFYING
05:28:28## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
05:28:28## at compile time!
05:28:28##
05:28:28## For an overview of these properties, see
05:28:28## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html05:28:28##
05:28:28## Properties marked with "DEVELOPMENT" should not be used in production.
05:28:2805:28:28# Comma separated list of Ice transports available to clients. The default
05:28:28# value ("ssl,tcp") instructs Ice to open the ports specified by the
05:28:28# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
05:28:28# will prevent all non-encrypted connections to the OMERO server.
05:28:28#
05:28:28# Additionally, there are two experimental values for using websockets:
05:28:28# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
05:28:28# that are opened are controlled by the omero.ports.ws and omero.ports.wss
05:28:28# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
05:28:28#
05:28:28# Note: When using websockets behind a web server like nginx, additional
05:28:28# configuration may be needed.
05:28:28omero.client.icetransports=ssl,tcp
05:28:2805:28:28# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
05:28:28# server
05:28:28omero.ports.prefix=
05:28:2805:28:28# The Glacier2 SSL port number to use
05:28:28omero.ports.ssl=4064
05:28:2805:28:28# The Glacier2 TCP port number to use (unencrypted)
05:28:28omero.ports.tcp=4063
05:28:2805:28:28# The Glacier2 WSS port number to use
05:28:28omero.ports.wss=4066
05:28:2805:28:28# The Glacier2 WS port number to use (unencrypted)
05:28:28omero.ports.ws=4065
05:28:2805:28:28# The IceGrid registry port number to use
05:28:28omero.ports.registry=4061
05:28:2805:28:28#############################################
05:28:28## JVM configuration
05:28:28##
05:28:28## Note: changes to the omero.jvmcfg properties
05:28:28## will *not* be reflected in OMERO.server
05:28:28## since they are defined in OMERO.py.
05:28:28#############################################
05:28:28## (For documentation only)
05:28:28# Memory strategy which will be used by default.
05:28:28# Options include: percent, manual
05:28:28omero.jvmcfg.strategy=percent
05:28:2805:28:28## (For documentation only)
05:28:28# Explicit value for the `-Xmx` argument, e.g.
05:28:28# "1g"
05:28:28omero.jvmcfg.heap_size=
05:28:2805:28:28## (For documentation only)
05:28:28# Explicit value for the MaxPermSize argument
05:28:28# to the JVM, e.g. "500M". Ignored for Java8+
05:28:28omero.jvmcfg.perm_gen=
05:28:2805:28:28## (For documentation only)
05:28:28# Toggles on or off heap dumps on OOMs. Default is "off".
05:28:28# The special value "tmp" will create the heap dumps in
05:28:28# your temp directory.
05:28:28omero.jvmcfg.heap_dump=
05:28:2805:28:28## (For documentation only)
05:28:28# Used only by the percent strategy. An integer between 0
05:28:28# and 100 which is the percent of active memory that will
05:28:28# be used by the service.
05:28:28omero.jvmcfg.percent=
05:28:2805:28:28## (For documentation only)
05:28:28# Contains other parameters which should be passed to the
05:28:28# JVM. The value of "append" is treated as if it were on
05:28:28# the command line so will be separated on whitespace.
05:28:28# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
05:28:28# results in two new arguments.
05:28:28# Note that when using `config set` from the command line
05:28:28# one may need to give a prior `--` option to prevent a value
05:28:28# starting with `-` from already being parsed as an option,
05:28:28# and values may need quoting to prevent whitespace or other
05:28:28# significant characters from being interpreted prematurely.
05:28:2805:28:28omero.jvmcfg.append=
05:28:2805:28:28## (For documentation only)
05:28:28# Manual override of the total system memory that
05:28:28# OMERO will *think* is present on the local OS (MB).
05:28:28# If unset, an attempt will be made to detect the actual
05:28:28# amount: first by using the Python library `psutil` and
05:28:28# if that is not installed, by running a Java tool. If
05:28:28# neither works, 4.0GB is assumed.
05:28:28omero.jvmcfg.system_memory=
05:28:2805:28:28## (For documentation only)
05:28:28# Suggestion for strategies as to the minimum memory
05:28:28# that they will use for calculating JVM settings (MB).
05:28:28omero.jvmcfg.min_system_memory=3414
05:28:2805:28:28## (For documentation only)
05:28:28# Suggestion for strategies as to the maximum memory
05:28:28# that they will use for calculating JVM settings (MB).
05:28:28omero.jvmcfg.max_system_memory=48000
05:28:2805:28:2805:28:28#############################################
05:28:28## Logging properties
05:28:28##
05:28:28## Note: changes to the default omero.logging values in
05:28:28## this file will *not* be reflected in OMERO.server
05:28:28## since they are defined in OMERO.py
05:28:28#############################################
05:28:2805:28:28## (For documentation only)
05:28:28# Relative server directory where the log files should be stored.
05:28:28omero.logging.directory=var/log/
05:28:2805:28:28## (For documentation only)
05:28:28# Whether the server log files should be rotated at a certain time
05:28:28# interval. If true, log files will be rolled over at midnight.
05:28:28# Otherwise, log files will be rolled over at a predetermined size,
05:28:28# see omero.logging.logsize for more information.
05:28:28omero.logging.timedlog=false
05:28:2805:28:28## (For documentation only)
05:28:28# If omero.logging.timedlog is false or unset, specifies the
05:28:28# maximum size of the server log files in bytes above which a
05:28:28# new log file should be created.
05:28:28omero.logging.logsize=5000000
05:28:2805:28:28## (For documentation only)
05:28:28# If omero.logging.timedlog is false or unset, specifies the
05:28:28# number of old server log files that should be kept. Old log
05:28:28# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
05:28:28omero.logging.lognum=9
05:28:2805:28:28## (For documentation only)
05:28:28# Specifies the threshold for the Python servers log files. Logging messages
05:28:28# which are less severe than this value will be ignored. For a list of
05:28:28# available values, see https://docs.python.org/3/library/logging.html#levels.
05:28:28omero.logging.level=20
05:28:2805:28:28#############################################
05:28:28## Ice overrides
05:28:28##
05:28:28## Though not used directly by OMERO, a number
05:28:28## of properties prefixed with "Ice.*" will
05:28:28## alter the behavior of the OMERO runtime
05:28:28## by configuring the Ice communicators. For a
05:28:28## full listing see:
05:28:28##
05:28:28## http://doc.zeroc.com/display/Ice/Property+Reference05:28:28## For more information see
05:28:28## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start05:28:28#############################################
05:28:2805:28:28# Disable IPv6 by setting to 0. Only needed in
05:28:28# certain situations.
05:28:28Ice.IPv6=1
05:28:2805:28:28# Glacier2Template IceSSL defaults and overrides,
05:28:28# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
05:28:28# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
05:28:28# update the corresponding IceSSL. property.
05:28:28omero.glacier2.IceSSL=
05:28:2805:28:28# Glacier2Template SSL maximum allowed protocol (mac bug)
05:28:28omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
05:28:28# Glacier2Template SSL allowed cipher suites
05:28:28omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
05:28:28# Glacier2Template SSL verification requirements
05:28:28omero.glacier2.IceSSL.VerifyPeer=0
05:28:28# Glacier2Template SSL allowed protocols
05:28:28omero.glacier2.IceSSL.Protocols=tls1
05:28:2805:28:28# Override the default set of OMERO services.
05:28:28# For example, to run OMERO.server with Blitz and Tables only
05:28:28# (i.e. disable Processor, DropBox, Indexer, PixelData)
05:28:28# set this to ``master:Blitz-0,Tables-0``.
05:28:28# Also use this to distribute OMERO services across multiple nodes,
05:28:28# for example:
05:28:28# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
05:28:28# See
05:28:28# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples05:28:28omero.server.nodedescriptors=
05:28:2805:28:28#############################################
05:28:28## Darwin (OS X) specific defaults for templated configuration files only.
05:28:28## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
05:28:28## file.
05:28:28## Do not set these properties in ``omero config``, instead set the original
05:28:28## ``xxx.yyy`` property
05:28:28#############################################
05:28:28_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
05:28:2805:28:28## (For documentation only)
05:28:28# Name of the Python module to use when starting the Tables service
05:28:28omero.tables.module=runTables
05:28:2805:28:28#############################################
05:28:28## Server product name for release artifacts
05:28:28#############################################
05:28:28product.name=OMERO.server
05:28:2805:28:28#############################################
05:28:28### Properties below this marker are ignored by
05:28:28### omero.install.config_parser.PropertyParser
05:28:28### END
05:28:2805:28:28#############################################
05:28:28## Library versions
05:28:28#############################################
05:28:28##
05:28:28versions.findbugs=1.2.1
05:28:28versions.ice36=3.6.5
05:28:28versions.ice36_lib=36
05:28:28## internal
05:28:28versions.omeroshares36=3.6.3
05:28:28versions.omeromock36=3.6.3
05:28:28versions.icedb36=3.6.3
05:28:28versions.ipython=1.2.1
05:28:2805:28:28versions.janino=2.5.10
05:28:2805:28:28versions.reportng=1.1.1
05:28:2805:28:28versions.testng=7.5
05:28:28versions.velocity=1.4
05:28:2805:28:28versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE05:28:28versions.omero-scripts-url=${versions.omero-pypi}
05:28:2805:28:28###
05:28:28### Appended Values
05:28:28###
05:28:2805:28:28## Internal dependencies'
05:28:28+ echo '##
05:28:28## omero.properties
05:28:28## ----------------
05:28:28##
05:28:28## DO NOT EDIT!
05:28:28##
05:28:28##
05:28:28## Any of these properties can be altered by using `omero config`. MODIFYING
05:28:28## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
05:28:28## at compile time!
05:28:28##
05:28:28## For an overview of these properties, see
05:28:28## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html05:28:28##
05:28:28## Properties marked with "DEVELOPMENT" should not be used in production.
05:28:2805:28:28# Comma separated list of Ice transports available to clients. The default
05:28:28# value ("ssl,tcp") instructs Ice to open the ports specified by the
05:28:28# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
05:28:28# will prevent all non-encrypted connections to the OMERO server.
05:28:28#
05:28:28# Additionally, there are two experimental values for using websockets:
05:28:28# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
05:28:28# that are opened are controlled by the omero.ports.ws and omero.ports.wss
05:28:28# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
05:28:28#
05:28:28# Note: When using websockets behind a web server like nginx, additional
05:28:28# configuration may be needed.
05:28:28omero.client.icetransports=ssl,tcp
05:28:2805:28:28# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
05:28:28# server
05:28:28omero.ports.prefix=
05:28:2805:28:28# The Glacier2 SSL port number to use
05:28:28omero.ports.ssl=4064
05:28:2805:28:28# The Glacier2 TCP port number to use (unencrypted)
05:28:28omero.ports.tcp=4063
05:28:2805:28:28# The Glacier2 WSS port number to use
05:28:28omero.ports.wss=4066
05:28:2805:28:28# The Glacier2 WS port number to use (unencrypted)
05:28:28omero.ports.ws=4065
05:28:2805:28:28# The IceGrid registry port number to use
05:28:28omero.ports.registry=4061
05:28:2805:28:28#############################################
05:28:28## JVM configuration
05:28:28##
05:28:28## Note: changes to the omero.jvmcfg properties
05:28:28## will *not* be reflected in OMERO.server
05:28:28## since they are defined in OMERO.py.
05:28:28#############################################
05:28:28## (For documentation only)
05:28:28# Memory strategy which will be used by default.
05:28:28# Options include: percent, manual
05:28:28omero.jvmcfg.strategy=percent
05:28:2805:28:28## (For documentation only)
05:28:28# Explicit value for the `-Xmx` argument, e.g.
05:28:28# "1g"
05:28:28omero.jvmcfg.heap_size=
05:28:2805:28:28## (For documentation only)
05:28:28# Explicit value for the MaxPermSize argument
05:28:28# to the JVM, e.g. "500M". Ignored for Java8+
05:28:28omero.jvmcfg.perm_gen=
05:28:2805:28:28## (For documentation only)
05:28:28# Toggles on or off heap dumps on OOMs. Default is "off".
05:28:28# The special value "tmp" will create the heap dumps in
05:28:28# your temp directory.
05:28:28omero.jvmcfg.heap_dump=
05:28:2805:28:28## (For documentation only)
05:28:28# Used only by the percent strategy. An integer between 0
05:28:28# and 100 which is the percent of active memory that will
05:28:28# be used by the service.
05:28:28omero.jvmcfg.percent=
05:28:2805:28:28## (For documentation only)
05:28:28# Contains other parameters which should be passed to the
05:28:28# JVM. The value of "append" is treated as if it were on
05:28:28# the command line so will be separated on whitespace.
05:28:28# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
05:28:28# results in two new arguments.
05:28:28# Note that when using `config set` from the command line
05:28:28# one may need to give a prior `--` option to prevent a value
05:28:28# starting with `-` from already being parsed as an option,
05:28:28# and values may need quoting to prevent whitespace or other
05:28:28# significant characters from being interpreted prematurely.
05:28:2805:28:28omero.jvmcfg.append=
05:28:2805:28:28## (For documentation only)
05:28:28# Manual override of the total system memory that
05:28:28# OMERO will *think* is present on the local OS (MB).
05:28:28# If unset, an attempt will be made to detect the actual
05:28:28# amount: first by using the Python library `psutil` and
05:28:28# if that is not installed, by running a Java tool. If
05:28:28# neither works, 4.0GB is assumed.
05:28:28omero.jvmcfg.system_memory=
05:28:2805:28:28## (For documentation only)
05:28:28# Suggestion for strategies as to the minimum memory
05:28:28# that they will use for calculating JVM settings (MB).
05:28:28omero.jvmcfg.min_system_memory=3414
05:28:2805:28:28## (For documentation only)
05:28:28# Suggestion for strategies as to the maximum memory
05:28:28# that they will use for calculating JVM settings (MB).
05:28:28omero.jvmcfg.max_system_memory=48000
05:28:2805:28:2805:28:28#############################################
05:28:28## Logging properties
05:28:28##
05:28:28## Note: changes to the default omero.logging values in
05:28:28## this file will *not* be reflected in OMERO.server
05:28:28## since they are defined in OMERO.py
05:28:28#############################################
05:28:2805:28:28## (For documentation only)
05:28:28# Relative server directory where the log files should be stored.
05:28:28omero.logging.directory=var/log/
05:28:2805:28:28## (For documentation only)
05:28:28# Whether the server log files should be rotated at a certain time
05:28:28# interval. If true, log files will be rolled over at midnight.
05:28:28# Otherwise, log files will be rolled over at a predetermined size,
05:28:28# see omero.logging.logsize for more information.
05:28:28omero.logging.timedlog=false
05:28:2805:28:28## (For documentation only)
05:28:28# If omero.logging.timedlog is false or unset, specifies the
05:28:28# maximum size of the server log files in bytes above which a
05:28:28# new log file should be created.
05:28:28omero.logging.logsize=5000000
05:28:2805:28:28## (For documentation only)
05:28:28# If omero.logging.timedlog is false or unset, specifies the
05:28:28# number of old server log files that should be kept. Old log
05:28:28# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
05:28:28omero.logging.lognum=9
05:28:2805:28:28## (For documentation only)
05:28:28# Specifies the threshold for the Python servers log files. Logging messages
05:28:28# which are less severe than this value will be ignored. For a list of
05:28:28# available values, see https://docs.python.org/3/library/logging.html#levels.
05:28:28omero.logging.level=20
05:28:2805:28:28#############################################
05:28:28## Ice overrides
05:28:28##
05:28:28## Though not used directly by OMERO, a number
05:28:28## of properties prefixed with "Ice.*" will
05:28:28## alter the behavior of the OMERO runtime
05:28:28## by configuring the Ice communicators. For a
05:28:28## full listing see:
05:28:28##
05:28:28## http://doc.zeroc.com/display/Ice/Property+Reference05:28:28## For more information see
05:28:28## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start05:28:28#############################################
05:28:2805:28:28# Disable IPv6 by setting to 0. Only needed in
05:28:28# certain situations.
05:28:28Ice.IPv6=1
05:28:2805:28:28# Glacier2Template IceSSL defaults and overrides,
05:28:28# see https://doc.zeroc.com/ice/3.6/property-reference/icessl.
05:28:28# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
05:28:28# update the corresponding IceSSL. property.
05:28:28omero.glacier2.IceSSL=
05:28:2805:28:28# Glacier2Template SSL maximum allowed protocol (mac bug)
05:28:28omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
05:28:28# Glacier2Template SSL allowed cipher suites
05:28:28omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
05:28:28# Glacier2Template SSL verification requirements
05:28:28omero.glacier2.IceSSL.VerifyPeer=0
05:28:28# Glacier2Template SSL allowed protocols
05:28:28omero.glacier2.IceSSL.Protocols=tls1
05:28:2805:28:28# Override the default set of OMERO services.
05:28:28# For example, to run OMERO.server with Blitz and Tables only
05:28:28# (i.e. disable Processor, DropBox, Indexer, PixelData)
05:28:28# set this to ``master:Blitz-0,Tables-0``.
05:28:28# Also use this to distribute OMERO services across multiple nodes,
05:28:28# for example:
05:28:28# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
05:28:28# See
05:28:28# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples05:28:28omero.server.nodedescriptors=
05:28:2805:28:28#############################################
05:28:28## Darwin (OS X) specific defaults for templated configuration files only.
05:28:28## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
05:28:28## file.
05:28:28## Do not set these properties in ``omero config``, instead set the original
05:28:28## ``xxx.yyy`` property
05:28:28#############################################
05:28:28_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
05:28:2805:28:28## (For documentation only)
05:28:28# Name of the Python module to use when starting the Tables service
05:28:28omero.tables.module=runTables
05:28:2805:28:28#############################################
05:28:28## Server product name for release artifacts
05:28:28#############################################
05:28:28product.name=OMERO.server
05:28:2805:28:28#############################################
05:28:28### Properties below this marker are ignored by
05:28:28### omero.install.config_parser.PropertyParser
05:28:28### END
05:28:2805:28:28#############################################
05:28:28## Library versions
05:28:28#############################################
05:28:28##
05:28:28versions.findbugs=1.2.1
05:28:28versions.ice36=3.6.5
05:28:28versions.ice36_lib=36
05:28:28## internal
05:28:28versions.omeroshares36=3.6.3
05:28:28versions.omeromock36=3.6.3
05:28:28versions.icedb36=3.6.3
05:28:28versions.ipython=1.2.1
05:28:2805:28:28versions.janino=2.5.10
05:28:2805:28:28versions.reportng=1.1.1
05:28:2805:28:28versions.testng=7.5
05:28:28versions.velocity=1.4
05:28:2805:28:28versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE05:28:28versions.omero-scripts-url=${versions.omero-pypi}
05:28:2805:28:28###
05:28:28### Appended Values
05:28:28###
05:28:2805:28:28## Internal dependencies'
05:28:28+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/05:28:28+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive05:28:28+ echo versions.scripts-prefix=
05:28:28+ echo versions.scripts=merge_ci
05:28:28+ cat /home/omero/workspace/OMERO-push/version.properties
05:28:28+ git commit -a -m 'Add version.properties to etc/omero.properties'
05:28:28[detached HEAD 28b8569e14] Add version.properties to etc/omero.properties
05:28:28 1 file changed, 47 insertions(+), 7 deletions(-)
05:28:28+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
05:28:29To github.com:snoopycrimecop/openmicroscopy.git
05:28:29 + 2de8b50fc5...28b8569e14 HEAD -> merge_ci (forced update)
05:28:29Finished: SUCCESS
![[Jenkins]](/jenkins/static/03a0bb70/images/svgs/logo.svg){kind=logo}
