23:27:33Started by upstream project "Trigger" build number 10123:27:33originally caused by:
23:27:33 Started by timer
23:27:33Running as SYSTEM
23:27:33Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push
23:27:33The recommended git tool is: NONE
23:27:33No credentials specified
23:27:33 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10
23:27:33Fetching changes from the remote Git repository
23:27:33 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10
23:27:33Fetching upstream changes from https://github.com/ome/openmicroscopy.git23:27:33 > git --version # timeout=10
23:27:33 > git --version # 'git version 2.52.0'
23:27:33 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
23:27:39 > git rev-parse origin/develop^{commit} # timeout=10
23:27:39Checking out Revision be0fd3d0efd5f419c2c373779e50107b5f1b6b8f (origin/develop)
23:27:39 > git config core.sparsecheckout # timeout=10
23:27:40 > git checkout -f be0fd3d0efd5f419c2c373779e50107b5f1b6b8f # timeout=30
23:27:43Commit message: "Merge pull request #6479 from pwalczysko/fix-zeroc"
23:27:43 > git rev-list --no-walk a49489e0cb2c30833afa413ae796f65478f6a387 # timeout=10
23:27:43Cleaning workspace
23:27:43 > git rev-parse --verify HEAD # timeout=10
23:27:43Resetting working tree
23:27:43 > git reset --hard # timeout=10
23:27:43 > git clean -fdx # timeout=10
23:27:44Copied 1 artifact from "OMERO-python-superbuild-build" build number 7323:27:44[OMERO-push] $ /bin/bash -xe /tmp/jenkins10593054014333881774.sh
23:27:44+ python3.11 -mvenv venv
23:27:47+ source /home/omero/workspace/OMERO-push/venv/bin/activate
23:27:47++ deactivate nondestructive
23:27:47++ '[' -n '' ']'
23:27:47++ '[' -n '' ']'
23:27:47++ hash -r
23:27:47++ '[' -n '' ']'
23:27:47++ unset VIRTUAL_ENV
23:27:47++ unset VIRTUAL_ENV_PROMPT
23:27:47++ '[' '!' nondestructive = nondestructive ']'
23:27:47++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv
23:27:47++ export VIRTUAL_ENV
23:27:47++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:27:47++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
23:27:47++ export PATH
23:27:47++ '[' -n '' ']'
23:27:47++ '[' -z '' ']'
23:27:47++ _OLD_VIRTUAL_PS1=
23:27:47++ PS1='(venv) '
23:27:47++ export PS1
23:27:47++ VIRTUAL_ENV_PROMPT='(venv) '
23:27:47++ export VIRTUAL_ENV_PROMPT
23:27:47++ hash -r
23:27:47+ pip install -U pip
23:27:52Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1)
23:27:52+ pip install -U scc
23:27:53Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0)
23:27:53Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1)
23:27:53Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3)
23:27:53Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0)
23:27:53Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1)
23:27:53Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7)
23:27:53Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0)
23:27:53Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20)
23:27:53Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0)
23:27:53Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2)
23:27:53Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2)
23:27:53Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0)
23:27:53Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0)
23:27:53Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0)
23:27:53Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0)
23:27:53Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0)
23:27:53Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8)
23:27:53Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18)
23:27:53Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17)
23:27:53+ test -e src
23:27:53+ cd src
23:27:53++ git config github.user
23:27:53+ user=snoopycrimecop
23:27:53+ scc merge develop --no-ask --reset --shallow -S success-only
23:28:032026-09-18 23:28:03,329 [ scc.merge] INFO Merging Pull Request(s) based on develop
23:28:032026-09-18 23:28:03,329 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
23:28:032026-09-18 23:28:03,329 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
23:28:032026-09-18 23:28:03,329 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
23:28:032026-09-18 23:28:03,329 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
23:28:032026-09-18 23:28:03,329 [ scc.merge] INFO Excluding Pull Request(s) without successful status
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO Repository: ome/openmicroscopy
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO Excluded PRs:
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO - PR 6458 will-moore 'Add test for conn.getObjects('Annotations', opts={...})' (status: failure)
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment)
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO Already up to date.
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO Merged PRs:
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO - PR 6423 jburel 'Use \d'
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests'
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer'
23:28:252026-09-18 23:28:25,015 [ scc.merge] INFO
23:28:25+ cp etc/omero.properties etc/omero.properties.bak
23:28:25+ rm etc/omero.properties
23:28:25+ touch etc/omero.properties
23:28:25++ sed -n '/Internal dependencies/=' etc/omero.properties.bak
23:28:25+ ne=252
23:28:25++ sed -n 1,252p etc/omero.properties.bak
23:28:25+ line='##
23:28:25## omero.properties
23:28:25## ----------------
23:28:25##
23:28:25## DO NOT EDIT!
23:28:25##
23:28:25##
23:28:25## Any of these properties can be altered by using `omero config`. MODIFYING
23:28:25## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
23:28:25## at compile time!
23:28:25##
23:28:25## For an overview of these properties, see
23:28:25## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html23:28:25##
23:28:25## Properties marked with "DEVELOPMENT" should not be used in production.
23:28:2523:28:25# Comma separated list of Ice transports available to clients. The default
23:28:25# value ("ssl,tcp") instructs Ice to open the ports specified by the
23:28:25# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
23:28:25# will prevent all non-encrypted connections to the OMERO server.
23:28:25#
23:28:25# Additionally, there are two experimental values for using websockets:
23:28:25# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
23:28:25# that are opened are controlled by the omero.ports.ws and omero.ports.wss
23:28:25# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
23:28:25#
23:28:25# Note: When using websockets behind a web server like nginx, additional
23:28:25# configuration may be needed.
23:28:25omero.client.icetransports=ssl,tcp
23:28:2523:28:25# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
23:28:25# server
23:28:25omero.ports.prefix=
23:28:2523:28:25# The Glacier2 SSL port number to use
23:28:25omero.ports.ssl=4064
23:28:2523:28:25# The Glacier2 TCP port number to use (unencrypted)
23:28:25omero.ports.tcp=4063
23:28:2523:28:25# The Glacier2 WSS port number to use
23:28:25omero.ports.wss=4066
23:28:2523:28:25# The Glacier2 WS port number to use (unencrypted)
23:28:25omero.ports.ws=4065
23:28:2523:28:25# The IceGrid registry port number to use
23:28:25omero.ports.registry=4061
23:28:2523:28:25#############################################
23:28:25## JVM configuration
23:28:25##
23:28:25## Note: changes to the omero.jvmcfg properties
23:28:25## will *not* be reflected in OMERO.server
23:28:25## since they are defined in OMERO.py.
23:28:25#############################################
23:28:25## (For documentation only)
23:28:25# Memory strategy which will be used by default.
23:28:25# Options include: percent, manual
23:28:25omero.jvmcfg.strategy=percent
23:28:2523:28:25## (For documentation only)
23:28:25# Explicit value for the `-Xmx` argument, e.g.
23:28:25# "1g"
23:28:25omero.jvmcfg.heap_size=
23:28:2523:28:25## (For documentation only)
23:28:25# Explicit value for the MaxPermSize argument
23:28:25# to the JVM, e.g. "500M". Ignored for Java8+
23:28:25omero.jvmcfg.perm_gen=
23:28:2523:28:25## (For documentation only)
23:28:25# Toggles on or off heap dumps on OOMs. Default is "off".
23:28:25# The special value "tmp" will create the heap dumps in
23:28:25# your temp directory.
23:28:25omero.jvmcfg.heap_dump=
23:28:2523:28:25## (For documentation only)
23:28:25# Used only by the percent strategy. An integer between 0
23:28:25# and 100 which is the percent of active memory that will
23:28:25# be used by the service.
23:28:25omero.jvmcfg.percent=
23:28:2523:28:25## (For documentation only)
23:28:25# Contains other parameters which should be passed to the
23:28:25# JVM. The value of "append" is treated as if it were on
23:28:25# the command line so will be separated on whitespace.
23:28:25# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
23:28:25# results in two new arguments.
23:28:25# Note that when using `config set` from the command line
23:28:25# one may need to give a prior `--` option to prevent a value
23:28:25# starting with `-` from already being parsed as an option,
23:28:25# and values may need quoting to prevent whitespace or other
23:28:25# significant characters from being interpreted prematurely.
23:28:2523:28:25omero.jvmcfg.append=
23:28:2523:28:25## (For documentation only)
23:28:25# Manual override of the total system memory that
23:28:25# OMERO will *think* is present on the local OS (MB).
23:28:25# If unset, an attempt will be made to detect the actual
23:28:25# amount: first by using the Python library `psutil` and
23:28:25# if that is not installed, by running a Java tool. If
23:28:25# neither works, 4.0GB is assumed.
23:28:25omero.jvmcfg.system_memory=
23:28:2523:28:25## (For documentation only)
23:28:25# Suggestion for strategies as to the minimum memory
23:28:25# that they will use for calculating JVM settings (MB).
23:28:25omero.jvmcfg.min_system_memory=3414
23:28:2523:28:25## (For documentation only)
23:28:25# Suggestion for strategies as to the maximum memory
23:28:25# that they will use for calculating JVM settings (MB).
23:28:25omero.jvmcfg.max_system_memory=48000
23:28:2523:28:2523:28:25#############################################
23:28:25## Logging properties
23:28:25##
23:28:25## Note: changes to the default omero.logging values in
23:28:25## this file will *not* be reflected in OMERO.server
23:28:25## since they are defined in OMERO.py
23:28:25#############################################
23:28:2523:28:25## (For documentation only)
23:28:25# Relative server directory where the log files should be stored.
23:28:25omero.logging.directory=var/log/
23:28:2523:28:25## (For documentation only)
23:28:25# Whether the server log files should be rotated at a certain time
23:28:25# interval. If true, log files will be rolled over at midnight.
23:28:25# Otherwise, log files will be rolled over at a predetermined size,
23:28:25# see omero.logging.logsize for more information.
23:28:25omero.logging.timedlog=false
23:28:2523:28:25## (For documentation only)
23:28:25# If omero.logging.timedlog is false or unset, specifies the
23:28:25# maximum size of the server log files in bytes above which a
23:28:25# new log file should be created.
23:28:25omero.logging.logsize=5000000
23:28:2523:28:25## (For documentation only)
23:28:25# If omero.logging.timedlog is false or unset, specifies the
23:28:25# number of old server log files that should be kept. Old log
23:28:25# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
23:28:25omero.logging.lognum=9
23:28:2523:28:25## (For documentation only)
23:28:25# Specifies the threshold for the Python servers log files. Logging messages
23:28:25# which are less severe than this value will be ignored. For a list of
23:28:25# available values, see https://docs.python.org/3/library/logging.html#levels.
23:28:25omero.logging.level=20
23:28:2523:28:25#############################################
23:28:25## Ice overrides
23:28:25##
23:28:25## Though not used directly by OMERO, a number
23:28:25## of properties prefixed with "Ice.*" will
23:28:25## alter the behavior of the OMERO runtime
23:28:25## by configuring the Ice communicators. For a
23:28:25## full listing see:
23:28:25##
23:28:25## http://doc.zeroc.com/display/Ice/Property+Reference23:28:25## For more information see
23:28:25## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start23:28:25#############################################
23:28:2523:28:25# Disable IPv6 by setting to 0. Only needed in
23:28:25# certain situations.
23:28:25Ice.IPv6=1
23:28:2523:28:25# Glacier2Template IceSSL defaults and overrides,
23:28:25# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
23:28:25# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
23:28:25# update the corresponding IceSSL. property.
23:28:25omero.glacier2.IceSSL=
23:28:2523:28:25# Glacier2Template SSL maximum allowed protocol (mac bug)
23:28:25omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
23:28:25# Glacier2Template SSL allowed cipher suites
23:28:25omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
23:28:25# Glacier2Template SSL verification requirements
23:28:25omero.glacier2.IceSSL.VerifyPeer=0
23:28:25# Glacier2Template SSL allowed protocols
23:28:25omero.glacier2.IceSSL.Protocols=tls1
23:28:2523:28:25# Override the default set of OMERO services.
23:28:25# For example, to run OMERO.server with Blitz and Tables only
23:28:25# (i.e. disable Processor, DropBox, Indexer, PixelData)
23:28:25# set this to ``master:Blitz-0,Tables-0``.
23:28:25# Also use this to distribute OMERO services across multiple nodes,
23:28:25# for example:
23:28:25# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
23:28:25# See
23:28:25# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples23:28:25omero.server.nodedescriptors=
23:28:2523:28:25#############################################
23:28:25## Darwin (OS X) specific defaults for templated configuration files only.
23:28:25## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
23:28:25## file.
23:28:25## Do not set these properties in ``omero config``, instead set the original
23:28:25## ``xxx.yyy`` property
23:28:25#############################################
23:28:25_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
23:28:2523:28:25## (For documentation only)
23:28:25# Name of the Python module to use when starting the Tables service
23:28:25omero.tables.module=runTables
23:28:2523:28:25#############################################
23:28:25## Server product name for release artifacts
23:28:25#############################################
23:28:25product.name=OMERO.server
23:28:2523:28:25#############################################
23:28:25### Properties below this marker are ignored by
23:28:25### omero.install.config_parser.PropertyParser
23:28:25### END
23:28:2523:28:25#############################################
23:28:25## Library versions
23:28:25#############################################
23:28:25##
23:28:25versions.findbugs=1.2.1
23:28:25versions.ice36=3.6.5
23:28:25versions.ice36_lib=36
23:28:25## internal
23:28:25versions.omeroshares36=3.6.3
23:28:25versions.omeromock36=3.6.3
23:28:25versions.icedb36=3.6.3
23:28:25versions.ipython=1.2.1
23:28:2523:28:25versions.janino=2.5.10
23:28:2523:28:25versions.reportng=1.1.1
23:28:2523:28:25versions.testng=7.5
23:28:25versions.velocity=1.4
23:28:2523:28:25versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE23:28:25versions.omero-scripts-url=${versions.omero-pypi}
23:28:2523:28:25# hard coded, should not be picked up by scc for now!
23:28:25versions.omero-zarr-pixel-buffer=0.7.1
23:28:2523:28:25###
23:28:25### Appended Values
23:28:25###
23:28:2523:28:25## Internal dependencies'
23:28:25+ echo '##
23:28:25## omero.properties
23:28:25## ----------------
23:28:25##
23:28:25## DO NOT EDIT!
23:28:25##
23:28:25##
23:28:25## Any of these properties can be altered by using `omero config`. MODIFYING
23:28:25## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults
23:28:25## at compile time!
23:28:25##
23:28:25## For an overview of these properties, see
23:28:25## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html23:28:25##
23:28:25## Properties marked with "DEVELOPMENT" should not be used in production.
23:28:2523:28:25# Comma separated list of Ice transports available to clients. The default
23:28:25# value ("ssl,tcp") instructs Ice to open the ports specified by the
23:28:25# omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl"
23:28:25# will prevent all non-encrypted connections to the OMERO server.
23:28:25#
23:28:25# Additionally, there are two experimental values for using websockets:
23:28:25# "ws" and "wss" for unencrypted and encrypted, respectively. The ports
23:28:25# that are opened are controlled by the omero.ports.ws and omero.ports.wss
23:28:25# properties. To enable all possible protocols use: "ssl,tcp,wss,ws".
23:28:25#
23:28:25# Note: When using websockets behind a web server like nginx, additional
23:28:25# configuration may be needed.
23:28:25omero.client.icetransports=ssl,tcp
23:28:2523:28:25# The prefix to apply to all port numbers (SSL, TCP, registry) used by the
23:28:25# server
23:28:25omero.ports.prefix=
23:28:2523:28:25# The Glacier2 SSL port number to use
23:28:25omero.ports.ssl=4064
23:28:2523:28:25# The Glacier2 TCP port number to use (unencrypted)
23:28:25omero.ports.tcp=4063
23:28:2523:28:25# The Glacier2 WSS port number to use
23:28:25omero.ports.wss=4066
23:28:2523:28:25# The Glacier2 WS port number to use (unencrypted)
23:28:25omero.ports.ws=4065
23:28:2523:28:25# The IceGrid registry port number to use
23:28:25omero.ports.registry=4061
23:28:2523:28:25#############################################
23:28:25## JVM configuration
23:28:25##
23:28:25## Note: changes to the omero.jvmcfg properties
23:28:25## will *not* be reflected in OMERO.server
23:28:25## since they are defined in OMERO.py.
23:28:25#############################################
23:28:25## (For documentation only)
23:28:25# Memory strategy which will be used by default.
23:28:25# Options include: percent, manual
23:28:25omero.jvmcfg.strategy=percent
23:28:2523:28:25## (For documentation only)
23:28:25# Explicit value for the `-Xmx` argument, e.g.
23:28:25# "1g"
23:28:25omero.jvmcfg.heap_size=
23:28:2523:28:25## (For documentation only)
23:28:25# Explicit value for the MaxPermSize argument
23:28:25# to the JVM, e.g. "500M". Ignored for Java8+
23:28:25omero.jvmcfg.perm_gen=
23:28:2523:28:25## (For documentation only)
23:28:25# Toggles on or off heap dumps on OOMs. Default is "off".
23:28:25# The special value "tmp" will create the heap dumps in
23:28:25# your temp directory.
23:28:25omero.jvmcfg.heap_dump=
23:28:2523:28:25## (For documentation only)
23:28:25# Used only by the percent strategy. An integer between 0
23:28:25# and 100 which is the percent of active memory that will
23:28:25# be used by the service.
23:28:25omero.jvmcfg.percent=
23:28:2523:28:25## (For documentation only)
23:28:25# Contains other parameters which should be passed to the
23:28:25# JVM. The value of "append" is treated as if it were on
23:28:25# the command line so will be separated on whitespace.
23:28:25# For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would
23:28:25# results in two new arguments.
23:28:25# Note that when using `config set` from the command line
23:28:25# one may need to give a prior `--` option to prevent a value
23:28:25# starting with `-` from already being parsed as an option,
23:28:25# and values may need quoting to prevent whitespace or other
23:28:25# significant characters from being interpreted prematurely.
23:28:2523:28:25omero.jvmcfg.append=
23:28:2523:28:25## (For documentation only)
23:28:25# Manual override of the total system memory that
23:28:25# OMERO will *think* is present on the local OS (MB).
23:28:25# If unset, an attempt will be made to detect the actual
23:28:25# amount: first by using the Python library `psutil` and
23:28:25# if that is not installed, by running a Java tool. If
23:28:25# neither works, 4.0GB is assumed.
23:28:25omero.jvmcfg.system_memory=
23:28:2523:28:25## (For documentation only)
23:28:25# Suggestion for strategies as to the minimum memory
23:28:25# that they will use for calculating JVM settings (MB).
23:28:25omero.jvmcfg.min_system_memory=3414
23:28:2523:28:25## (For documentation only)
23:28:25# Suggestion for strategies as to the maximum memory
23:28:25# that they will use for calculating JVM settings (MB).
23:28:25omero.jvmcfg.max_system_memory=48000
23:28:2523:28:2523:28:25#############################################
23:28:25## Logging properties
23:28:25##
23:28:25## Note: changes to the default omero.logging values in
23:28:25## this file will *not* be reflected in OMERO.server
23:28:25## since they are defined in OMERO.py
23:28:25#############################################
23:28:2523:28:25## (For documentation only)
23:28:25# Relative server directory where the log files should be stored.
23:28:25omero.logging.directory=var/log/
23:28:2523:28:25## (For documentation only)
23:28:25# Whether the server log files should be rotated at a certain time
23:28:25# interval. If true, log files will be rolled over at midnight.
23:28:25# Otherwise, log files will be rolled over at a predetermined size,
23:28:25# see omero.logging.logsize for more information.
23:28:25omero.logging.timedlog=false
23:28:2523:28:25## (For documentation only)
23:28:25# If omero.logging.timedlog is false or unset, specifies the
23:28:25# maximum size of the server log files in bytes above which a
23:28:25# new log file should be created.
23:28:25omero.logging.logsize=5000000
23:28:2523:28:25## (For documentation only)
23:28:25# If omero.logging.timedlog is false or unset, specifies the
23:28:25# number of old server log files that should be kept. Old log
23:28:25# files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc.
23:28:25omero.logging.lognum=9
23:28:2523:28:25## (For documentation only)
23:28:25# Specifies the threshold for the Python servers log files. Logging messages
23:28:25# which are less severe than this value will be ignored. For a list of
23:28:25# available values, see https://docs.python.org/3/library/logging.html#levels.
23:28:25omero.logging.level=20
23:28:2523:28:25#############################################
23:28:25## Ice overrides
23:28:25##
23:28:25## Though not used directly by OMERO, a number
23:28:25## of properties prefixed with "Ice.*" will
23:28:25## alter the behavior of the OMERO runtime
23:28:25## by configuring the Ice communicators. For a
23:28:25## full listing see:
23:28:25##
23:28:25## http://doc.zeroc.com/display/Ice/Property+Reference23:28:25## For more information see
23:28:25## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start23:28:25#############################################
23:28:2523:28:25# Disable IPv6 by setting to 0. Only needed in
23:28:25# certain situations.
23:28:25Ice.IPv6=1
23:28:2523:28:25# Glacier2Template IceSSL defaults and overrides,
23:28:25# see https://archive.zeroc.com/ice/3.6/property-reference/icessl.
23:28:25# Any property beginning ``omero.glacier2.IceSSL.`` will be used to
23:28:25# update the corresponding IceSSL. property.
23:28:25omero.glacier2.IceSSL=
23:28:2523:28:25# Glacier2Template SSL maximum allowed protocol (mac bug)
23:28:25omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1
23:28:25# Glacier2Template SSL allowed cipher suites
23:28:25omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH
23:28:25# Glacier2Template SSL verification requirements
23:28:25omero.glacier2.IceSSL.VerifyPeer=0
23:28:25# Glacier2Template SSL allowed protocols
23:28:25omero.glacier2.IceSSL.Protocols=tls1
23:28:2523:28:25# Override the default set of OMERO services.
23:28:25# For example, to run OMERO.server with Blitz and Tables only
23:28:25# (i.e. disable Processor, DropBox, Indexer, PixelData)
23:28:25# set this to ``master:Blitz-0,Tables-0``.
23:28:25# Also use this to distribute OMERO services across multiple nodes,
23:28:25# for example:
23:28:25# ``master:Blitz-0,Tables-0 worker1:Processor-0``.
23:28:25# See
23:28:25# https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples23:28:25omero.server.nodedescriptors=
23:28:2523:28:25#############################################
23:28:25## Darwin (OS X) specific defaults for templated configuration files only.
23:28:25## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this
23:28:25## file.
23:28:25## Do not set these properties in ``omero config``, instead set the original
23:28:25## ``xxx.yyy`` property
23:28:25#############################################
23:28:25_omero.glacier2.IceSSL.Ciphers.darwin=(AES)
23:28:2523:28:25## (For documentation only)
23:28:25# Name of the Python module to use when starting the Tables service
23:28:25omero.tables.module=runTables
23:28:2523:28:25#############################################
23:28:25## Server product name for release artifacts
23:28:25#############################################
23:28:25product.name=OMERO.server
23:28:2523:28:25#############################################
23:28:25### Properties below this marker are ignored by
23:28:25### omero.install.config_parser.PropertyParser
23:28:25### END
23:28:2523:28:25#############################################
23:28:25## Library versions
23:28:25#############################################
23:28:25##
23:28:25versions.findbugs=1.2.1
23:28:25versions.ice36=3.6.5
23:28:25versions.ice36_lib=36
23:28:25## internal
23:28:25versions.omeroshares36=3.6.3
23:28:25versions.omeromock36=3.6.3
23:28:25versions.icedb36=3.6.3
23:28:25versions.ipython=1.2.1
23:28:2523:28:25versions.janino=2.5.10
23:28:2523:28:25versions.reportng=1.1.1
23:28:2523:28:25versions.testng=7.5
23:28:25versions.velocity=1.4
23:28:2523:28:25versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE23:28:25versions.omero-scripts-url=${versions.omero-pypi}
23:28:2523:28:25# hard coded, should not be picked up by scc for now!
23:28:25versions.omero-zarr-pixel-buffer=0.7.1
23:28:2523:28:25###
23:28:25### Appended Values
23:28:25###
23:28:2523:28:25## Internal dependencies'
23:28:25+ echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/23:28:25+ echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive23:28:25+ echo versions.scripts-prefix=
23:28:25+ echo versions.scripts=merge_ci
23:28:25+ cat /home/omero/workspace/OMERO-push/version.properties
23:28:25+ git commit -a -m 'Add version.properties to etc/omero.properties'
23:28:25[detached HEAD 83a16dadfd] Add version.properties to etc/omero.properties
23:28:25 1 file changed, 46 insertions(+), 5 deletions(-)
23:28:25+ git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci
23:28:28To github.com:snoopycrimecop/openmicroscopy.git
23:28:28 + 6e43949dc6...83a16dadfd HEAD -> merge_ci (forced update)
23:28:28Finished: SUCCESS
