![[Jenkins]](/jenkins/static/e865dcf2/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 611 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-python-superbuild-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-python-superbuild-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision e505e4936e5c9bb70e5ff78e9177f491ec55c92d (refs/remotes/origin/master) Commit message: "Merge pull request #328 from ome/dependabot/submodules/omero-py-70b6235" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-python-superbuild-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-python-superbuild.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-python-superbuild.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-python-superbuild.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f e505e4936e5c9bb70e5ff78e9177f491ec55c92d # timeout=10 > git rev-list --no-walk e505e4936e5c9bb70e5ff78e9177f491ec55c92d # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-py.url # timeout=10 > git config -f .gitmodules --get submodule.omero-py.path # timeout=10 > git config --get submodule.omero-web.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web.path # timeout=10 > git config --get submodule.omero-marshal.url # timeout=10 > git config -f .gitmodules --get submodule.omero-marshal.path # timeout=10 > git config --get submodule.omero-dropbox.url # timeout=10 > git config -f .gitmodules --get submodule.omero-dropbox.path # timeout=10 > git config --get submodule.omero-scripts.url # timeout=10 > git config -f .gitmodules --get submodule.omero-scripts.path # timeout=10 > git submodule update --init --recursive omero-py # timeout=10 > git submodule update --init --recursive omero-web # timeout=10 > git submodule update --init --recursive omero-marshal # timeout=10 > git submodule update --init --recursive omero-dropbox # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 540 [Pipeline] sh + pushd build ~/workspace/OMERO-python-superbuild-push/build ~/workspace/OMERO-python-superbuild-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-python-superbuild-push + python3.11 -m venv build/venv > git submodule update --init --recursive omero-scripts # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.15-py3-none-any.whl.metadata (25 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-45.0.7-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=1.14 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting pycparser (from cffi>=1.14->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.8.3-py3-none-any.whl.metadata (2.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-45.0.7-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-1.17.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (467 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Using cached ruamel.yaml-0.18.15-py3-none-any.whl (119 kB) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.2 certifi-2025.8.3 cffi-1.17.1 charset_normalizer-3.4.3 cryptography-45.0.7 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.5 ruamel.yaml-0.18.15 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-python-superbuild.git + BASE_REPO=omero-python-superbuild.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-09-07 00:30:04,464 [ scc.config] DEBUG Found github.token 2025-09-07 00:30:04,465 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-07 00:30:04,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:05,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:05,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-07 00:30:05,585 [ scc.gh] DEBUG 4366 remaining from 5000 (Reset at 00:09 2025-09-07 00:30:05,586 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-07 00:30:05,589 [ scc.git] DEBUG Check current status 2025-09-07 00:30:05,589 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:05,591 [ scc.git] DEBUG e505e49 Merge pull request #328 from ome/dependabot/submodules/omero-py-70b6235 2025-09-07 00:30:05,592 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:05,635 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-07 00:30:05,639 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-07 00:30:05,644 [ scc.git] DEBUG 70b6235a7283f1729225c4c3c24f01dfe97ae12b omero-py (v5.21.0-5-g70b6235a) 2025-09-07 00:30:05,649 [ scc.git] DEBUG 573db340d5d1429fa17c7e486206948412a7c150 omero-scripts (v5.9.1-1-g573db34) 2025-09-07 00:30:05,653 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-07 00:30:05,656 [ scc.config] DEBUG Found remote.origin.url 2025-09-07 00:30:06,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-09-07 00:30:06,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-07 00:30:06,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-07 00:30:07,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-07 00:30:07,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-07 00:30:07,832 [ scc.git] DEBUG Resetting... 2025-09-07 00:30:07,832 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-07 00:30:07,837 [ scc.git] DEBUG HEAD is now at e505e49 Merge pull request #328 from ome/dependabot/submodules/omero-py-70b6235 2025-09-07 00:30:07,837 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-07 00:30:07,896 [ scc.git] DEBUG Check current status 2025-09-07 00:30:07,896 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:07,898 [ scc.git] DEBUG e505e49 Merge pull request #328 from ome/dependabot/submodules/omero-py-70b6235 2025-09-07 00:30:07,899 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:07,941 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-07 00:30:07,944 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-07 00:30:07,949 [ scc.git] DEBUG 70b6235a7283f1729225c4c3c24f01dfe97ae12b omero-py (v5.21.0-5-g70b6235a) 2025-09-07 00:30:07,953 [ scc.git] DEBUG 573db340d5d1429fa17c7e486206948412a7c150 omero-scripts (v5.9.1-1-g573db34) 2025-09-07 00:30:07,958 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-07 00:30:07,959 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-07 00:30:07,959 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-07 00:30:07,959 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-07 00:30:07,959 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-07 00:30:07,959 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-07 00:30:07,959 [ scc.repo] DEBUG ## PRs found: 2025-09-07 00:30:08,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2 2025-09-07 00:30:08,255 [ scc.repo] DEBUG ## Branches found: 2025-09-07 00:30:08,255 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:08,255 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:08,258 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-07 00:30:08,260 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-07 00:30:08,260 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-07 00:30:08,263 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-07 00:30:08,265 [ scc.git] DEBUG Already up to date. 2025-09-07 00:30:08,265 [ scc.git] DEBUG ## Unique users: [] 2025-09-07 00:30:08,265 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:08,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:08,267 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-07 00:30:08,310 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:08,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:08,312 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-07 00:30:08,347 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1b3edb150> has no local changes 2025-09-07 00:30:08,347 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-python-superbuild Already up to date. Generated by OMERO-python-superbuild-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/)' 2025-09-07 00:30:08,372 [ scc.git] DEBUG [detached HEAD b876aaf] merge master -Dorg -Snone 2025-09-07 00:30:08,372 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-09-07 00:30:08,372 [ scc.merge] INFO Already up to date. 2025-09-07 00:30:08,373 [ scc.merge] INFO 2025-09-07 00:30:08,373 [ scc.merge] INFO 2025-09-07 00:30:08,373 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-07 00:30:08,373 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'omero-dropbox' Synchronizing submodule url for 'omero-marshal' Synchronizing submodule url for 'omero-py' Synchronizing submodule url for 'omero-scripts' Synchronizing submodule url for 'omero-web' From https://github.com/ome/omero-dropbox * [new branch] dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 -> origin/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 From https://github.com/ome/omero-marshal * [new branch] dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 -> origin/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 From https://github.com/ome/omero-scripts * [new branch] dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 -> origin/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 Merge all submodules using repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-09-07 00:30:10,816 [ scc.config] DEBUG Found github.token 2025-09-07 00:30:10,817 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-07 00:30:10,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:11,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:11,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-07 00:30:11,807 [ scc.gh] DEBUG 4358 remaining from 5000 (Reset at 00:09 2025-09-07 00:30:11,808 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-07 00:30:11,810 [ scc.git] DEBUG Check current status 2025-09-07 00:30:11,810 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:11,813 [ scc.git] DEBUG b876aaf merge master -Dorg -Snone 2025-09-07 00:30:11,813 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:11,856 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-07 00:30:11,859 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-07 00:30:11,864 [ scc.git] DEBUG 70b6235a7283f1729225c4c3c24f01dfe97ae12b omero-py (v5.21.0-5-g70b6235a) 2025-09-07 00:30:11,869 [ scc.git] DEBUG 573db340d5d1429fa17c7e486206948412a7c150 omero-scripts (v5.9.1-1-g573db34) 2025-09-07 00:30:11,873 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-07 00:30:11,876 [ scc.config] DEBUG Found remote.origin.url 2025-09-07 00:30:11,876 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-09-07 00:30:11,877 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-09-07 00:30:12,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-09-07 00:30:12,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-07 00:30:13,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-07 00:30:13,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-07 00:30:14,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-07 00:30:14,122 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:14,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-07 00:30:14,173 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-07 00:30:14,176 [ scc.git] DEBUG Check current status 2025-09-07 00:30:14,176 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:14,179 [ scc.git] DEBUG 01fa0c5 Merge pull request #24 from jburel/build 2025-09-07 00:30:14,179 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:14,222 [ scc.config] DEBUG Found remote.origin.url 2025-09-07 00:30:14,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None 2025-09-07 00:30:15,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-07 00:30:15,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-07 00:30:15,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-07 00:30:16,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-07 00:30:16,350 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:16,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:30:16,392 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-07 00:30:16,392 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-07 00:30:16,394 [ scc.git] DEBUG Check current status 2025-09-07 00:30:16,394 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:16,396 [ scc.git] DEBUG 6d44f66 Merge pull request #82 from jburel/build 2025-09-07 00:30:16,396 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:16,438 [ scc.config] DEBUG Found remote.origin.url 2025-09-07 00:30:16,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None 2025-09-07 00:30:17,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-07 00:30:17,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-07 00:30:18,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-07 00:30:18,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-07 00:30:18,684 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:18,726 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:30:18,727 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-07 00:30:18,727 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-07 00:30:18,729 [ scc.git] DEBUG Check current status 2025-09-07 00:30:18,729 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:18,732 [ scc.git] DEBUG 70b6235a Merge pull request #464 from dominikl/map_anno_wrapper 2025-09-07 00:30:18,732 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:18,773 [ scc.config] DEBUG Found remote.origin.url 2025-09-07 00:30:19,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None 2025-09-07 00:30:19,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-07 00:30:20,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-07 00:30:20,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-07 00:30:20,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-07 00:30:20,993 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:21,036 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:30:21,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-07 00:30:21,037 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-07 00:30:21,039 [ scc.git] DEBUG Check current status 2025-09-07 00:30:21,039 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:21,042 [ scc.git] DEBUG 573db34 Bump version: 5.9.1 → 5.9.2.dev0 2025-09-07 00:30:21,042 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:21,083 [ scc.config] DEBUG Found remote.origin.url 2025-09-07 00:30:21,084 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-09-07 00:30:21,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None 2025-09-07 00:30:21,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-07 00:30:22,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-07 00:30:22,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-07 00:30:23,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-07 00:30:23,214 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:23,256 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:30:23,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-07 00:30:23,257 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-07 00:30:23,259 [ scc.git] DEBUG Check current status 2025-09-07 00:30:23,259 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:23,262 [ scc.git] DEBUG 2a7c4d2e3 Bump version: 5.29.2 → 5.29.3.dev0 2025-09-07 00:30:23,262 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:23,305 [ scc.config] DEBUG Found remote.origin.url 2025-09-07 00:30:23,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None 2025-09-07 00:30:24,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-07 00:30:24,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-07 00:30:25,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-07 00:30:25,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-07 00:30:25,499 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:25,541 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:30:25,541 [ scc.git] DEBUG Resetting... 2025-09-07 00:30:25,541 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-07 00:30:25,545 [ scc.git] DEBUG HEAD is now at b876aaf merge master -Dorg -Snone 2025-09-07 00:30:25,546 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-07 00:30:25,600 [ scc.git] DEBUG Check current status 2025-09-07 00:30:25,600 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-07 00:30:25,602 [ scc.git] DEBUG b876aaf merge master -Dorg -Snone 2025-09-07 00:30:25,603 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-07 00:30:25,645 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-07 00:30:25,648 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-07 00:30:25,653 [ scc.git] DEBUG 70b6235a7283f1729225c4c3c24f01dfe97ae12b omero-py (v5.21.0-5-g70b6235a) 2025-09-07 00:30:25,658 [ scc.git] DEBUG 573db340d5d1429fa17c7e486206948412a7c150 omero-scripts (v5.9.1-1-g573db34) 2025-09-07 00:30:25,662 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-07 00:30:25,663 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-07 00:30:25,663 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-07 00:30:25,663 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-07 00:30:25,663 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-07 00:30:25,663 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-07 00:30:25,663 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-09-07 00:30:25,663 [ scc.repo] DEBUG ## PRs found: 2025-09-07 00:30:25,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 2 2025-09-07 00:30:25,911 [ scc.repo] DEBUG ## Branches found: 2025-09-07 00:30:25,911 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:25,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:25,913 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-07 00:30:25,915 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-07 00:30:25,915 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-07 00:30:25,918 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-07 00:30:25,921 [ scc.git] DEBUG Already up to date. 2025-09-07 00:30:25,921 [ scc.git] DEBUG ## Unique users: [] 2025-09-07 00:30:25,921 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:25,921 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:25,923 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-07 00:30:25,966 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:25,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:25,968 [ scc.repo] DEBUG ## PRs found: 2025-09-07 00:30:26,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None 2025-09-07 00:30:26,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/26 HTTP/1.1" 200 None 2025-09-07 00:30:26,943 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-07 00:30:27,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a HTTP/1.1" 200 None 2025-09-07 00:30:27,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:28,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:30:29,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a HTTP/1.1" 200 None 2025-09-07 00:30:29,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/38aa63d7d4014725060e4ecaa159922370485c5a?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:30:29,523 [ scc.repo] DEBUG - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-07 00:30:30,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None 2025-09-07 00:30:30,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None 2025-09-07 00:30:31,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-09-07 00:30:31,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:32,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-09-07 00:30:32,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:30:32,442 [ scc.repo] DEBUG - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-09-07 00:30:32,443 [ scc.repo] DEBUG ## Branches found: 2025-09-07 00:30:32,443 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-07 00:30:32,443 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:32,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:32,446 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-07 00:30:32,448 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-07 00:30:32,448 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-07 00:30:32,451 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-07 00:30:32,454 [ scc.git] DEBUG Already up to date. 2025-09-07 00:30:32,454 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-09-07 00:30:32,747 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox 2025-09-07 00:30:32,747 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-09-07 00:30:32,751 [ scc.git] DEBUG Calling 'git fetch origin pull/26/head' 2025-09-07 00:30:33,033 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox 2025-09-07 00:30:33,033 [ scc.git] DEBUG * branch refs/pull/26/head -> FETCH_HEAD 2025-09-07 00:30:33,038 [ scc.git] DEBUG ## Unique users: [] 2025-09-07 00:30:33,038 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:33,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:33,040 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-09-07 00:30:33,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:33,046 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsDirectory.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsDropBox.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsLists.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsMonitor.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsMonitorServer.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py 2025-09-07 00:30:33,059 [ scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py 2025-09-07 00:30:33,060 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsAbstractPlatformMonitor.py | 6 +++--- 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsDirectory.py | 46 ++++++++++++++++++++-------------------- 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsDropBox.py | 24 ++++++++++----------- 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsLists.py | 14 ++++++------ 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsMac-10-5-Monitor.py | 10 ++++----- 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsMonitor.py | 24 ++++++++++----------- 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsMonitorServer.py | 10 ++++----- 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsPyinotifyMonitor.py | 8 +++---- 2025-09-07 00:30:33,064 [ scc.git] DEBUG src/fsWin-XP-Monitor.py | 20 ++++++++--------- 2025-09-07 00:30:33,065 [ scc.git] DEBUG 9 files changed, 81 insertions(+), 81 deletions(-) 2025-09-07 00:30:33,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:33,214 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38aa63d7d4014725060e4ecaa159922370485c5a' 2025-09-07 00:30:33,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:33,220 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 26 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38aa63d7d4014725060e4ecaa159922370485c5a' 2025-09-07 00:30:33,229 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:30:33,232 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-07 00:30:33,232 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-07 00:30:33,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:33,615 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-07 00:30:33,657 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:33,657 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:33,659 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:33,698 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-07 00:30:33,703 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6790a821d0> has no local changes 2025-09-07 00:30:33,703 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-python-superbuild-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/)' 2025-09-07 00:30:33,710 [ scc.git] DEBUG [detached HEAD bc00879] merge master -Dorg -Ssuccess-only 2025-09-07 00:30:33,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:30:33,711 [ scc.repo] DEBUG ## PRs found: 2025-09-07 00:30:34,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None 2025-09-07 00:30:34,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/85 HTTP/1.1" 200 None 2025-09-07 00:30:34,688 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-07 00:30:35,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8 HTTP/1.1" 200 None 2025-09-07 00:30:35,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:36,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:30:36,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8 HTTP/1.1" 200 None 2025-09-07 00:30:37,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1ff3bb78434dee715c2029077581cdbbfdaedce8?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:30:37,352 [ scc.repo] DEBUG - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-07 00:30:37,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84 HTTP/1.1" 200 None 2025-09-07 00:30:38,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84/comments HTTP/1.1" 200 None 2025-09-07 00:30:38,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None 2025-09-07 00:30:39,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None 2025-09-07 00:30:39,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-09-07 00:30:40,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:40,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-09-07 00:30:41,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:30:41,138 [ scc.repo] DEBUG - PR 69 will-moore 'Roi encoder allows Shape None' 2025-09-07 00:30:41,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None 2025-09-07 00:30:42,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None 2025-09-07 00:30:42,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None 2025-09-07 00:30:43,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None 2025-09-07 00:30:43,033 [ scc.repo] DEBUG ## Branches found: 2025-09-07 00:30:43,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-07 00:30:43,033 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:43,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:43,036 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-07 00:30:43,038 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-07 00:30:43,038 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-07 00:30:43,041 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-07 00:30:43,044 [ scc.git] DEBUG Already up to date. 2025-09-07 00:30:43,044 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head' 2025-09-07 00:30:43,352 [ scc.git] DEBUG From https://github.com/ome/omero-marshal 2025-09-07 00:30:43,352 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD 2025-09-07 00:30:43,357 [ scc.git] DEBUG Calling 'git fetch origin pull/85/head' 2025-09-07 00:30:43,637 [ scc.git] DEBUG From https://github.com/ome/omero-marshal 2025-09-07 00:30:43,637 [ scc.git] DEBUG * branch refs/pull/85/head -> FETCH_HEAD 2025-09-07 00:30:43,642 [ scc.git] DEBUG ## Unique users: [] 2025-09-07 00:30:43,642 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:43,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:43,644 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-09-07 00:30:43,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:43,650 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-09-07 00:30:43,660 [ scc.git] DEBUG Auto-merging tests/unit/conftest.py 2025-09-07 00:30:43,661 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:30:43,664 [ scc.git] DEBUG omero_marshal/encode/encoders/roi.py | 5 +++-- 2025-09-07 00:30:43,664 [ scc.git] DEBUG tests/unit/conftest.py | 5 ++++- 2025-09-07 00:30:43,664 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 3 deletions(-) 2025-09-07 00:30:43,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:43,814 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1ff3bb78434dee715c2029077581cdbbfdaedce8' 2025-09-07 00:30:43,817 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:43,820 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 85 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1ff3bb78434dee715c2029077581cdbbfdaedce8' 2025-09-07 00:30:43,829 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:30:43,832 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-07 00:30:43,832 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-07 00:30:44,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:30:44,204 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-07 00:30:44,246 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:30:44,246 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:30:44,249 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:30:44,288 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-07 00:30:44,292 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6790ee2d10> has no local changes 2025-09-07 00:30:44,292 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-python-superbuild-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/)' 2025-09-07 00:30:44,299 [ scc.git] DEBUG [detached HEAD bf1901b] merge master -Dorg -Ssuccess-only 2025-09-07 00:30:44,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:30:44,299 [ scc.repo] DEBUG ## PRs found: 2025-09-07 00:30:44,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None 2025-09-07 00:30:45,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/472 HTTP/1.1" 200 None 2025-09-07 00:30:45,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/472/comments HTTP/1.1" 200 None 2025-09-07 00:30:46,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/fbcef67768f4e37313bc42a18b5fb078964fcf64 HTTP/1.1" 200 None 2025-09-07 00:30:46,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/fbcef67768f4e37313bc42a18b5fb078964fcf64/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:47,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/fbcef67768f4e37313bc42a18b5fb078964fcf64/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:30:47,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/fbcef67768f4e37313bc42a18b5fb078964fcf64 HTTP/1.1" 200 None 2025-09-07 00:30:48,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/fbcef67768f4e37313bc42a18b5fb078964fcf64?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:48,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/fbcef67768f4e37313bc42a18b5fb078964fcf64 HTTP/1.1" 200 None 2025-09-07 00:30:49,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/fbcef67768f4e37313bc42a18b5fb078964fcf64/status HTTP/1.1" 200 None 2025-09-07 00:30:49,221 [ scc.repo] DEBUG - PR 472 sbesson 'Remove PyOpenSSL injection via urllib3' 2025-09-07 00:30:49,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/470 HTTP/1.1" 200 None 2025-09-07 00:30:50,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/470/comments HTTP/1.1" 200 None 2025-09-07 00:30:50,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/459 HTTP/1.1" 200 None 2025-09-07 00:30:51,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450 HTTP/1.1" 200 None 2025-09-07 00:30:51,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450/comments HTTP/1.1" 200 None 2025-09-07 00:30:52,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443 HTTP/1.1" 200 None 2025-09-07 00:30:52,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443/comments HTTP/1.1" 200 None 2025-09-07 00:30:52,596 [ scc.repo] DEBUG # ... Exclude label: exclude 2025-09-07 00:30:53,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None 2025-09-07 00:30:53,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None 2025-09-07 00:30:54,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-09-07 00:30:54,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:55,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-09-07 00:30:55,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:30:55,488 [ scc.repo] DEBUG - PR 408 jburel 'remove deprecated method' 2025-09-07 00:30:55,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None 2025-09-07 00:30:56,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None 2025-09-07 00:30:57,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None 2025-09-07 00:30:57,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:30:58,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:30:58,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None 2025-09-07 00:30:58,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391/comments HTTP/1.1" 200 None 2025-09-07 00:30:59,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-09-07 00:30:59,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:00,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-09-07 00:31:00,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:31:00,842 [ scc.repo] DEBUG - PR 391 joshmoore 'Add jstack command' 2025-09-07 00:31:01,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None 2025-09-07 00:31:01,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None 2025-09-07 00:31:02,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-09-07 00:31:02,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:03,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-09-07 00:31:03,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:31:03,728 [ scc.repo] DEBUG - PR 332 jburel 'Build conda' 2025-09-07 00:31:04,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None 2025-09-07 00:31:04,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None 2025-09-07 00:31:05,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None 2025-09-07 00:31:05,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None 2025-09-07 00:31:06,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-09-07 00:31:06,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:07,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-09-07 00:31:07,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:31:07,530 [ scc.repo] DEBUG - PR 199 joshmoore 'user: allow setting default group' 2025-09-07 00:31:07,531 [ scc.repo] DEBUG ## Branches found: 2025-09-07 00:31:07,531 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-07 00:31:07,531 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:31:07,531 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:07,534 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-07 00:31:07,536 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-07 00:31:07,536 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-07 00:31:07,539 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-07 00:31:07,543 [ scc.git] DEBUG Already up to date. 2025-09-07 00:31:07,543 [ scc.git] DEBUG Calling 'git fetch origin pull/199/head' 2025-09-07 00:31:07,856 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-07 00:31:07,856 [ scc.git] DEBUG * branch refs/pull/199/head -> FETCH_HEAD 2025-09-07 00:31:07,861 [ scc.git] DEBUG Calling 'git fetch origin pull/332/head' 2025-09-07 00:31:08,138 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-07 00:31:08,139 [ scc.git] DEBUG * branch refs/pull/332/head -> FETCH_HEAD 2025-09-07 00:31:08,144 [ scc.git] DEBUG Calling 'git fetch origin pull/391/head' 2025-09-07 00:31:08,451 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-07 00:31:08,451 [ scc.git] DEBUG * branch refs/pull/391/head -> FETCH_HEAD 2025-09-07 00:31:08,456 [ scc.git] DEBUG Calling 'git fetch origin pull/408/head' 2025-09-07 00:31:08,751 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-07 00:31:08,751 [ scc.git] DEBUG * branch refs/pull/408/head -> FETCH_HEAD 2025-09-07 00:31:08,756 [ scc.git] DEBUG Calling 'git fetch origin pull/472/head' 2025-09-07 00:31:09,047 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-07 00:31:09,047 [ scc.git] DEBUG * branch refs/pull/472/head -> FETCH_HEAD 2025-09-07 00:31:09,052 [ scc.git] DEBUG ## Unique users: [] 2025-09-07 00:31:09,052 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:31:09,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:09,055 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-09-07 00:31:09,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:09,070 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-09-07 00:31:09,093 [ scc.git] DEBUG Auto-merging src/omero/cli.py 2025-09-07 00:31:09,093 [ scc.git] DEBUG Auto-merging src/omero/plugins/user.py 2025-09-07 00:31:09,095 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:31:09,100 [ scc.git] DEBUG src/omero/cli.py | 6 ++++++ 2025-09-07 00:31:09,100 [ scc.git] DEBUG src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++--- 2025-09-07 00:31:09,100 [ scc.git] DEBUG 2 files changed, 39 insertions(+), 3 deletions(-) 2025-09-07 00:31:09,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:09,275 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-09-07 00:31:09,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:09,292 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-09-07 00:31:09,314 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:31:09,317 [ scc.git] DEBUG .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++ 2025-09-07 00:31:09,318 [ scc.git] DEBUG connect.py | 11 +++++++++++ 2025-09-07 00:31:09,318 [ scc.git] DEBUG 2 files changed, 48 insertions(+) 2025-09-07 00:31:09,318 [ scc.git] DEBUG create mode 100644 .github/workflows/install.yml 2025-09-07 00:31:09,318 [ scc.git] DEBUG create mode 100644 connect.py 2025-09-07 00:31:09,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:09,683 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023' 2025-09-07 00:31:09,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:09,698 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023' 2025-09-07 00:31:09,722 [ scc.git] DEBUG Auto-merging src/omero/plugins/admin.py 2025-09-07 00:31:09,724 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:31:09,728 [ scc.git] DEBUG src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++-- 2025-09-07 00:31:09,728 [ scc.git] DEBUG 1 file changed, 59 insertions(+), 2 deletions(-) 2025-09-07 00:31:10,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:10,081 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-09-07 00:31:10,095 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:10,097 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-09-07 00:31:10,132 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py 2025-09-07 00:31:10,133 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:31:10,140 [ scc.git] DEBUG src/omero/gateway/__init__.py | 36 ------------------------------------ 2025-09-07 00:31:10,140 [ scc.git] DEBUG 1 file changed, 36 deletions(-) 2025-09-07 00:31:10,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:10,504 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fbcef67768f4e37313bc42a18b5fb078964fcf64' 2025-09-07 00:31:10,517 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:10,520 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 472 (Remove PyOpenSSL injection via urllib3) fbcef67768f4e37313bc42a18b5fb078964fcf64' 2025-09-07 00:31:10,545 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:31:10,549 [ scc.git] DEBUG setup.py | 1 - 2025-09-07 00:31:10,549 [ scc.git] DEBUG src/omero/util/upgrade_check.py | 7 ------- 2025-09-07 00:31:10,549 [ scc.git] DEBUG 2 files changed, 8 deletions(-) 2025-09-07 00:31:10,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:10,892 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-07 00:31:10,935 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:31:10,935 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:10,937 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:31:10,977 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-07 00:31:10,984 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f678eb6cc50> has no local changes 2025-09-07 00:31:10,984 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-py Excluded PRs: - PR 470 multimeric 'Faux import' (user: multimeric) - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 472 sbesson 'Remove PyOpenSSL injection via urllib3' Generated by OMERO-python-superbuild-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/)' 2025-09-07 00:31:10,994 [ scc.git] DEBUG [detached HEAD adc1d8b4] merge master -Dorg -Ssuccess-only 2025-09-07 00:31:10,995 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:31:10,995 [ scc.git] INFO Overriding base-branch from master to develop 2025-09-07 00:31:10,995 [ scc.repo] DEBUG ## PRs found: 2025-09-07 00:31:11,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-09-07 00:31:11,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/228 HTTP/1.1" 200 None 2025-09-07 00:31:11,965 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-07 00:31:12,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/0c3fd48b0a51e6ced85e979d6a7da516870ea280 HTTP/1.1" 200 None 2025-09-07 00:31:13,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/0c3fd48b0a51e6ced85e979d6a7da516870ea280/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:13,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/0c3fd48b0a51e6ced85e979d6a7da516870ea280/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:14,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/0c3fd48b0a51e6ced85e979d6a7da516870ea280 HTTP/1.1" 200 None 2025-09-07 00:31:14,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/0c3fd48b0a51e6ced85e979d6a7da516870ea280?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:31:14,570 [ scc.repo] DEBUG - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2025-09-07 00:31:15,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2025-09-07 00:31:15,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2025-09-07 00:31:16,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-07 00:31:16,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:17,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:17,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-07 00:31:18,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:31:18,035 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-07 00:31:18,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2025-09-07 00:31:19,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2025-09-07 00:31:19,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-07 00:31:20,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:20,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-07 00:31:20,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:31:20,955 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-07 00:31:21,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-09-07 00:31:21,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-09-07 00:31:22,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2025-09-07 00:31:22,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2025-09-07 00:31:22,959 [ scc.repo] DEBUG ## Branches found: 2025-09-07 00:31:22,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-07 00:31:22,959 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:31:22,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:22,962 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-09-07 00:31:22,965 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-07 00:31:22,965 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-09-07 00:31:22,968 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-09-07 00:31:22,971 [ scc.git] DEBUG Already up to date. 2025-09-07 00:31:22,971 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2025-09-07 00:31:23,271 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-09-07 00:31:23,271 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2025-09-07 00:31:23,276 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2025-09-07 00:31:23,563 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-09-07 00:31:23,563 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2025-09-07 00:31:23,568 [ scc.git] DEBUG Calling 'git fetch origin pull/228/head' 2025-09-07 00:31:23,855 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-09-07 00:31:23,855 [ scc.git] DEBUG * branch refs/pull/228/head -> FETCH_HEAD 2025-09-07 00:31:23,860 [ scc.git] DEBUG ## Unique users: [] 2025-09-07 00:31:23,860 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:31:23,860 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:23,863 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-07 00:31:23,868 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:23,871 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-07 00:31:23,881 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree. 2025-09-07 00:31:23,882 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-07 00:31:23,882 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-07 00:31:23,884 [ scc.git] DEBUG Calling 'git reset --hard 573db340d5d1429fa17c7e486206948412a7c150' 2025-09-07 00:31:23,888 [ scc.git] DEBUG HEAD is now at 573db34 Bump version: 5.9.1 → 5.9.2.dev0 2025-09-07 00:31:24,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:24,022 [ scc.git] DEBUG Calling 'git merge-base 573db340d5d1429fa17c7e486206948412a7c150 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-07 00:31:24,027 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..573db340d5d1429fa17c7e486206948412a7c150' 2025-09-07 00:31:24,032 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-python-superbuild-push#512](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2025-09-07 00:31:24,034 [ scc.config] DEBUG Found github.token 2025-09-07 00:31:24,034 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2025-09-07 00:31:24,034 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-07 00:31:24,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:24,041 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-07 00:31:24,050 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:31:24,054 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2025-09-07 00:31:24,054 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2025-09-07 00:31:24,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:24,422 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0c3fd48b0a51e6ced85e979d6a7da516870ea280' 2025-09-07 00:31:24,426 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:24,428 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 228 (Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows) 0c3fd48b0a51e6ced85e979d6a7da516870ea280' 2025-09-07 00:31:24,438 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:31:24,441 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-07 00:31:24,441 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-07 00:31:24,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:31:24,862 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-07 00:31:24,905 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:31:24,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:31:24,908 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:31:24,947 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-07 00:31:24,951 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f678e3cabd0> has no local changes 2025-09-07 00:31:24,951 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-python-superbuild-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/)' 2025-09-07 00:31:24,958 [ scc.git] DEBUG [detached HEAD f04139a] merge master -Dorg -Ssuccess-only 2025-09-07 00:31:24,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:31:24,959 [ scc.repo] DEBUG ## PRs found: 2025-09-07 00:31:25,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None 2025-09-07 00:31:26,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/629 HTTP/1.1" 200 None 2025-09-07 00:31:26,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/628 HTTP/1.1" 200 None 2025-09-07 00:31:27,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-07 00:31:27,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:28,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:28,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-07 00:31:28,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/b8c7989c9900270d7cf27523f2649bbb903c7a60?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:29,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-07 00:31:29,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/status HTTP/1.1" 200 None 2025-09-07 00:31:29,989 [ scc.repo] DEBUG - PR 628 jburel 'Add protocol required since Django4' 2025-09-07 00:31:30,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/619 HTTP/1.1" 200 None 2025-09-07 00:31:31,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-07 00:31:31,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:32,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:32,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-07 00:31:32,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/6dbfcebfee72e20f36a434fdc8850930d89acdac?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:33,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-07 00:31:33,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/status HTTP/1.1" 200 None 2025-09-07 00:31:33,993 [ scc.repo] DEBUG - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-09-07 00:31:34,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613 HTTP/1.1" 200 None 2025-09-07 00:31:34,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613/comments HTTP/1.1" 200 None 2025-09-07 00:31:35,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342 HTTP/1.1" 200 None 2025-09-07 00:31:35,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:36,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:37,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342 HTTP/1.1" 200 None 2025-09-07 00:31:37,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/cca34cb278cac5fb8088df75cc4fe5f315810342?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:37,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342 HTTP/1.1" 200 None 2025-09-07 00:31:38,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/cca34cb278cac5fb8088df75cc4fe5f315810342/status HTTP/1.1" 200 None 2025-09-07 00:31:38,502 [ scc.repo] DEBUG - PR 613 will-moore 'externalInfo display' 2025-09-07 00:31:39,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612 HTTP/1.1" 200 None 2025-09-07 00:31:39,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612/comments HTTP/1.1" 200 None 2025-09-07 00:31:39,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-07 00:31:40,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:41,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:41,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-07 00:31:42,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06446bf912b361c22e46c5a0678b3146b91e7e26?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:42,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-07 00:31:43,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/status HTTP/1.1" 200 None 2025-09-07 00:31:43,029 [ scc.repo] DEBUG - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-09-07 00:31:43,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604 HTTP/1.1" 200 None 2025-09-07 00:31:44,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604/comments HTTP/1.1" 200 None 2025-09-07 00:31:44,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-07 00:31:45,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:45,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:46,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-07 00:31:46,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/15e1289cb1c1533c8606b9c9f745d1f24575bb7d?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:47,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-07 00:31:47,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/status HTTP/1.1" 200 None 2025-09-07 00:31:47,572 [ scc.repo] DEBUG - PR 604 will-moore 'Right panel perf' 2025-09-07 00:31:48,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/602 HTTP/1.1" 200 None 2025-09-07 00:31:48,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-07 00:31:49,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:49,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:50,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-07 00:31:50,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/9119372e9fef8cab0e212f02685c8715a3307539?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:51,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-07 00:31:51,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/status HTTP/1.1" 200 None 2025-09-07 00:31:51,671 [ scc.repo] DEBUG - PR 602 Tom-TBT 'Inherit all annotations' 2025-09-07 00:31:52,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596 HTTP/1.1" 200 None 2025-09-07 00:31:52,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596/comments HTTP/1.1" 200 None 2025-09-07 00:31:53,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-07 00:31:53,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:54,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:54,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-07 00:31:55,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/3aae48f586d7b412538a45b34ddc471a26a286e8?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:55,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-07 00:31:56,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/status HTTP/1.1" 200 None 2025-09-07 00:31:56,233 [ scc.repo] DEBUG - PR 596 sukunis 'Linkify can parse anchor tag' 2025-09-07 00:31:56,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595 HTTP/1.1" 200 None 2025-09-07 00:31:57,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595/comments HTTP/1.1" 200 None 2025-09-07 00:31:57,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-07 00:31:58,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:31:58,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-07 00:31:59,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-07 00:31:59,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/30278b64bb39134a3f1101b600d4a82256e6eaeb?per_page=1 HTTP/1.1" 200 None 2025-09-07 00:32:00,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-07 00:32:00,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/status HTTP/1.1" 200 None 2025-09-07 00:32:00,588 [ scc.repo] DEBUG - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-09-07 00:32:01,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None 2025-09-07 00:32:01,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None 2025-09-07 00:32:02,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None 2025-09-07 00:32:02,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None 2025-09-07 00:32:03,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-09-07 00:32:03,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:32:04,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-09-07 00:32:04,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:32:04,490 [ scc.repo] DEBUG - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-09-07 00:32:04,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None 2025-09-07 00:32:05,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None 2025-09-07 00:32:05,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-09-07 00:32:06,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:32:06,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-09-07 00:32:07,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:32:07,348 [ scc.repo] DEBUG - PR 527 will-moore 'Add some initial CSP settings to test' 2025-09-07 00:32:07,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None 2025-09-07 00:32:08,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None 2025-09-07 00:32:08,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None 2025-09-07 00:32:09,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-07 00:32:09,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None 2025-09-07 00:32:10,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06b0073db19eeccb9698860f75639084ad1b1200?per_page=1 HTTP/1.1" 200 2 2025-09-07 00:32:10,421 [ scc.repo] DEBUG - PR 168 stick 'Changes to nginx @maintenance handler' 2025-09-07 00:32:10,421 [ scc.repo] DEBUG ## Branches found: 2025-09-07 00:32:10,421 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-07 00:32:10,422 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:32:10,422 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:10,424 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-07 00:32:10,427 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-07 00:32:10,427 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-07 00:32:10,431 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-07 00:32:10,434 [ scc.git] DEBUG Already up to date. 2025-09-07 00:32:10,434 [ scc.git] DEBUG Calling 'git fetch origin pull/168/head' 2025-09-07 00:32:10,731 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:10,731 [ scc.git] DEBUG * branch refs/pull/168/head -> FETCH_HEAD 2025-09-07 00:32:10,736 [ scc.git] DEBUG Calling 'git fetch origin pull/527/head' 2025-09-07 00:32:11,038 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:11,038 [ scc.git] DEBUG * branch refs/pull/527/head -> FETCH_HEAD 2025-09-07 00:32:11,043 [ scc.git] DEBUG Calling 'git fetch origin pull/534/head' 2025-09-07 00:32:11,340 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:11,340 [ scc.git] DEBUG * branch refs/pull/534/head -> FETCH_HEAD 2025-09-07 00:32:11,345 [ scc.git] DEBUG Calling 'git fetch origin pull/595/head' 2025-09-07 00:32:11,631 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:11,631 [ scc.git] DEBUG * branch refs/pull/595/head -> FETCH_HEAD 2025-09-07 00:32:11,636 [ scc.git] DEBUG Calling 'git fetch origin pull/596/head' 2025-09-07 00:32:12,005 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:12,005 [ scc.git] DEBUG * branch refs/pull/596/head -> FETCH_HEAD 2025-09-07 00:32:12,010 [ scc.git] DEBUG Calling 'git fetch origin pull/602/head' 2025-09-07 00:32:12,304 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:12,304 [ scc.git] DEBUG * branch refs/pull/602/head -> FETCH_HEAD 2025-09-07 00:32:12,308 [ scc.git] DEBUG Calling 'git fetch origin pull/604/head' 2025-09-07 00:32:12,600 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:12,600 [ scc.git] DEBUG * branch refs/pull/604/head -> FETCH_HEAD 2025-09-07 00:32:12,606 [ scc.git] DEBUG Calling 'git fetch origin pull/612/head' 2025-09-07 00:32:12,889 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:12,889 [ scc.git] DEBUG * branch refs/pull/612/head -> FETCH_HEAD 2025-09-07 00:32:12,894 [ scc.git] DEBUG Calling 'git fetch origin pull/613/head' 2025-09-07 00:32:13,182 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:13,182 [ scc.git] DEBUG * branch refs/pull/613/head -> FETCH_HEAD 2025-09-07 00:32:13,187 [ scc.git] DEBUG Calling 'git fetch origin pull/619/head' 2025-09-07 00:32:13,472 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:13,472 [ scc.git] DEBUG * branch refs/pull/619/head -> FETCH_HEAD 2025-09-07 00:32:13,478 [ scc.git] DEBUG Calling 'git fetch origin pull/628/head' 2025-09-07 00:32:13,765 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-07 00:32:13,765 [ scc.git] DEBUG * branch refs/pull/628/head -> FETCH_HEAD 2025-09-07 00:32:13,771 [ scc.git] DEBUG ## Unique users: [] 2025-09-07 00:32:13,771 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:32:13,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:13,773 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06b0073db19eeccb9698860f75639084ad1b1200' 2025-09-07 00:32:13,782 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:13,784 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 168 (Changes to nginx @maintenance handler) 06b0073db19eeccb9698860f75639084ad1b1200' 2025-09-07 00:32:13,805 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:13,809 [ scc.git] DEBUG omeroweb/templates/nginx-development.conf.template | 2 +- 2025-09-07 00:32:13,809 [ scc.git] DEBUG omeroweb/templates/nginx-location.conf.template | 3 ++- 2025-09-07 00:32:13,809 [ scc.git] DEBUG omeroweb/templates/nginx.conf.template | 2 +- 2025-09-07 00:32:13,809 [ scc.git] DEBUG test/unit/reference_templates/nginx-development-withoptions.conf | 2 +- 2025-09-07 00:32:13,809 [ scc.git] DEBUG test/unit/reference_templates/nginx-development.conf | 2 +- 2025-09-07 00:32:13,809 [ scc.git] DEBUG test/unit/reference_templates/nginx-location-withoptions.conf | 3 ++- 2025-09-07 00:32:13,809 [ scc.git] DEBUG test/unit/reference_templates/nginx-location.conf | 3 ++- 2025-09-07 00:32:13,809 [ scc.git] DEBUG test/unit/reference_templates/nginx-withoptions.conf | 2 +- 2025-09-07 00:32:13,809 [ scc.git] DEBUG test/unit/reference_templates/nginx.conf | 2 +- 2025-09-07 00:32:13,810 [ scc.git] DEBUG test/unit/test_web.py | 1 + 2025-09-07 00:32:13,810 [ scc.git] DEBUG 10 files changed, 13 insertions(+), 9 deletions(-) 2025-09-07 00:32:13,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:13,972 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-09-07 00:32:13,981 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:13,983 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-09-07 00:32:14,004 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-07 00:32:14,004 [ scc.git] DEBUG Auto-merging setup.py 2025-09-07 00:32:14,005 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:14,009 [ scc.git] DEBUG omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++- 2025-09-07 00:32:14,009 [ scc.git] DEBUG setup.py | 1 + 2025-09-07 00:32:14,009 [ scc.git] DEBUG 2 files changed, 42 insertions(+), 1 deletion(-) 2025-09-07 00:32:14,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:14,375 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-09-07 00:32:14,384 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:14,386 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-09-07 00:32:14,410 [ scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py 2025-09-07 00:32:14,410 [ scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py 2025-09-07 00:32:14,411 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:14,416 [ scc.git] DEBUG omeroweb/webclient/webclient_gateway.py | 2 +- 2025-09-07 00:32:14,416 [ scc.git] DEBUG omeroweb/webgateway/marshal.py | 4 ++-- 2025-09-07 00:32:14,416 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 3 deletions(-) 2025-09-07 00:32:14,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:14,779 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-09-07 00:32:14,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:14,790 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 595 (linkify supports urls that include {}[] characters) 30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-09-07 00:32:14,811 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:14,815 [ scc.git] DEBUG omeroweb/webclient/static/webclient/javascript/ome.webclient.actions.js | 2 +- 2025-09-07 00:32:14,815 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-07 00:32:15,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:15,177 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-09-07 00:32:15,186 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:15,189 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 596 (Linkify can parse anchor tag) 3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-09-07 00:32:15,209 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:15,213 [ scc.git] DEBUG .../webclient/javascript/ome.webclient.actions.js | 26 ++++++++++++++++++++-- 2025-09-07 00:32:15,213 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2025-09-07 00:32:15,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:15,589 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9119372e9fef8cab0e212f02685c8715a3307539' 2025-09-07 00:32:15,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:15,600 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 602 (Inherit all annotations) 9119372e9fef8cab0e212f02685c8715a3307539' 2025-09-07 00:32:15,623 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:15,628 [ scc.git] DEBUG omeroweb/webclient/static/webclient/css/dusty.css | 1 - 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../javascript/ome.right_panel_comments_pane.js | 134 +++++++++++++++++++-- 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../javascript/ome.right_panel_fileanns_pane.js | 80 +++++++++++- 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../javascript/ome.right_panel_mapanns_pane.js | 6 +- 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../javascript/ome.right_panel_ratings_pane.js | 33 ++++- 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../javascript/ome.right_panel_tags_pane.js | 92 ++++++++++++-- 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../webclient/annotations/comments_underscore.html | 58 +++++++-- 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../webclient/annotations/fileanns_underscore.html | 81 ++++++++----- 2025-09-07 00:32:15,628 [ scc.git] DEBUG .../webclient/annotations/mapanns_underscore.html | 4 + 2025-09-07 00:32:15,629 [ scc.git] DEBUG .../webclient/annotations/ratings_underscore.html | 4 +- 2025-09-07 00:32:15,629 [ scc.git] DEBUG .../webclient/annotations/tags_underscore.html | 30 +++-- 2025-09-07 00:32:15,629 [ scc.git] DEBUG 11 files changed, 447 insertions(+), 76 deletions(-) 2025-09-07 00:32:15,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:15,996 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-09-07 00:32:16,005 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:16,007 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 604 (Right panel perf) 15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-09-07 00:32:16,034 [ scc.git] DEBUG Auto-merging omeroweb/webclient/views.py 2025-09-07 00:32:16,035 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:16,042 [ scc.git] DEBUG omeroweb/webclient/controller/container.py | 66 ++++++++++------------ 2025-09-07 00:32:16,042 [ scc.git] DEBUG .../webclient/annotations/annotations_share.html | 12 +--- 2025-09-07 00:32:16,042 [ scc.git] DEBUG omeroweb/webclient/views.py | 51 ----------------- 2025-09-07 00:32:16,042 [ scc.git] DEBUG 3 files changed, 31 insertions(+), 98 deletions(-) 2025-09-07 00:32:16,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:16,396 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-09-07 00:32:16,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:16,407 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 612 (Allow top_links to wrap if too many for space) 06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-09-07 00:32:16,430 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:16,434 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.body.css | 2 ++ 2025-09-07 00:32:16,434 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.header.css | 21 +++++++++++---------- 2025-09-07 00:32:16,434 [ scc.git] DEBUG 2 files changed, 13 insertions(+), 10 deletions(-) 2025-09-07 00:32:16,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:16,828 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cca34cb278cac5fb8088df75cc4fe5f315810342' 2025-09-07 00:32:16,837 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:16,839 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 613 (externalInfo display) cca34cb278cac5fb8088df75cc4fe5f315810342' 2025-09-07 00:32:16,863 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:16,868 [ scc.git] DEBUG .../webclient/annotations/includes/toolbar.html | 20 ++++++++++++-- 2025-09-07 00:32:16,868 [ scc.git] DEBUG .../webclient/annotations/metadata_general.html | 31 +++++++++++++++------- 2025-09-07 00:32:16,869 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 2 ++ 2025-09-07 00:32:16,869 [ scc.git] DEBUG 3 files changed, 42 insertions(+), 11 deletions(-) 2025-09-07 00:32:17,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:17,229 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-09-07 00:32:17,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:17,241 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 619 (Permit subpackages as app plugins) 6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-09-07 00:32:17,262 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-07 00:32:17,263 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:17,267 [ scc.git] DEBUG omeroweb/settings.py | 9 ++++----- 2025-09-07 00:32:17,267 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 5 deletions(-) 2025-09-07 00:32:17,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:17,660 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b8c7989c9900270d7cf27523f2649bbb903c7a60' 2025-09-07 00:32:17,669 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:17,671 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 628 (Add protocol required since Django4) b8c7989c9900270d7cf27523f2649bbb903c7a60' 2025-09-07 00:32:17,692 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-07 00:32:17,694 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-07 00:32:17,698 [ scc.git] DEBUG omeroweb/settings.py | 4 ++-- 2025-09-07 00:32:17,698 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2025-09-07 00:32:18,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:18,074 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-07 00:32:18,115 [ scc.git] DEBUG Get sha1 of %s 2025-09-07 00:32:18,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-07 00:32:18,117 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:32:18,158 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-07 00:32:18,166 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f678e35ea90> has no local changes 2025-09-07 00:32:18,166 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web Excluded PRs: - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) Already up to date. Merged PRs: - PR 168 stick 'Changes to nginx @maintenance handler' - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 628 jburel 'Add protocol required since Django4' Generated by OMERO-python-superbuild-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/)' 2025-09-07 00:32:18,175 [ scc.git] DEBUG [detached HEAD f6e8dfcf0] merge master -Dorg -Ssuccess-only 2025-09-07 00:32:18,176 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:32:18,176 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-07 00:32:18,226 [ scc.config] DEBUG Found submodule.omero-dropbox.url 2025-09-07 00:32:18,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:18,472 [ scc.config] DEBUG Found submodule.omero-marshal.url 2025-09-07 00:32:18,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:18,878 [ scc.config] DEBUG Found submodule.omero-py.url 2025-09-07 00:32:19,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:19,268 [ scc.config] DEBUG Found submodule.omero-scripts.url 2025-09-07 00:32:19,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:19,683 [ scc.config] DEBUG Found submodule.omero-web.url 2025-09-07 00:32:20,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-07 00:32:20,241 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-07 00:32:20,272 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f6790adf150> has local changes 2025-09-07 00:32:20,272 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-python-superbuild Already up to date. Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-py Excluded PRs: - PR 470 multimeric 'Faux import' (user: multimeric) - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 472 sbesson 'Remove PyOpenSSL injection via urllib3' Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Repository: ome/omero-web Excluded PRs: - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) Already up to date. Merged PRs: - PR 168 stick 'Changes to nginx @maintenance handler' - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 628 jburel 'Add protocol required since Django4' Generated by OMERO-python-superbuild-push#512 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/512/)' 2025-09-07 00:32:20,280 [ scc.git] DEBUG [detached HEAD 1a67362] merge master -Dorg -Ssuccess-only 2025-09-07 00:32:20,280 [ scc.git] DEBUG 6 files changed, 10 insertions(+), 10 deletions(-) 2025-09-07 00:32:20,280 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-09-07 00:32:20,280 [ scc.merge] INFO Already up to date. 2025-09-07 00:32:20,280 [ scc.merge] INFO 2025-09-07 00:32:20,280 [ scc.merge] INFO 2025-09-07 00:32:20,280 [ scc.merge] INFO Repository: ome/omero-dropbox 2025-09-07 00:32:20,280 [ scc.merge] INFO Already up to date. 2025-09-07 00:32:20,280 [ scc.merge] INFO 2025-09-07 00:32:20,281 [ scc.merge] INFO Merged PRs: 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-07 00:32:20,281 [ scc.merge] INFO 2025-09-07 00:32:20,281 [ scc.merge] INFO Repository: ome/omero-marshal 2025-09-07 00:32:20,281 [ scc.merge] INFO Excluded PRs: 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 34 chris-allan 'Initial support for Event' (exclude comment) 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) 2025-09-07 00:32:20,281 [ scc.merge] INFO Already up to date. 2025-09-07 00:32:20,281 [ scc.merge] INFO 2025-09-07 00:32:20,281 [ scc.merge] INFO Merged PRs: 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 69 will-moore 'Roi encoder allows Shape None' 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-07 00:32:20,281 [ scc.merge] INFO 2025-09-07 00:32:20,281 [ scc.merge] INFO Repository: ome/omero-py 2025-09-07 00:32:20,281 [ scc.merge] INFO Excluded PRs: 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 470 multimeric 'Faux import' (user: multimeric) 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 450 multimeric 'Add model stubs' (user: multimeric) 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) 2025-09-07 00:32:20,281 [ scc.merge] INFO Already up to date. 2025-09-07 00:32:20,281 [ scc.merge] INFO 2025-09-07 00:32:20,281 [ scc.merge] INFO Merged PRs: 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 199 joshmoore 'user: allow setting default group' 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 332 jburel 'Build conda' 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 391 joshmoore 'Add jstack command' 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 408 jburel 'remove deprecated method' 2025-09-07 00:32:20,281 [ scc.merge] INFO - PR 472 sbesson 'Remove PyOpenSSL injection via urllib3' 2025-09-07 00:32:20,281 [ scc.merge] INFO 2025-09-07 00:32:20,281 [ scc.merge] INFO Repository: ome/omero-scripts 2025-09-07 00:32:20,282 [ scc.merge] INFO Excluded PRs: 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2025-09-07 00:32:20,282 [ scc.merge] INFO Already up to date. 2025-09-07 00:32:20,282 [ scc.merge] INFO 2025-09-07 00:32:20,282 [ scc.merge] INFO Merged PRs: 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2025-09-07 00:32:20,282 [ scc.merge] INFO 2025-09-07 00:32:20,282 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-07 00:32:20,282 [ scc.merge] INFO 2025-09-07 00:32:20,282 [ scc.merge] INFO Repository: ome/omero-web 2025-09-07 00:32:20,282 [ scc.merge] INFO Excluded PRs: 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 535 will-moore 'Initial working browser history' (stage: draft) 2025-09-07 00:32:20,282 [ scc.merge] INFO Already up to date. 2025-09-07 00:32:20,282 [ scc.merge] INFO 2025-09-07 00:32:20,282 [ scc.merge] INFO Merged PRs: 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 168 stick 'Changes to nginx @maintenance handler' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 527 will-moore 'Add some initial CSP settings to test' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 596 sukunis 'Linkify can parse anchor tag' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 602 Tom-TBT 'Inherit all annotations' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 604 will-moore 'Right panel perf' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 613 will-moore 'externalInfo display' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-09-07 00:32:20,282 [ scc.merge] INFO - PR 628 jburel 'Add protocol required since Django4' 2025-09-07 00:32:20,282 [ scc.merge] INFO 2025-09-07 00:32:20,282 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-07 00:32:20,282 [ scc.git] DEBUG Calling 'git remote' 2025-09-07 00:32:20,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-07 00:32:20,285 [ scc.git] DEBUG Calling 'git remote' 2025-09-07 00:32:20,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:32:20,287 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-07 00:32:20,287 [ scc.git] DEBUG Calling 'git remote' 2025-09-07 00:32:20,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:32:20,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-07 00:32:20,290 [ scc.git] DEBUG Calling 'git remote' 2025-09-07 00:32:20,292 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:32:20,292 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-07 00:32:20,292 [ scc.git] DEBUG Calling 'git remote' 2025-09-07 00:32:20,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-07 00:32:20,294 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-07 00:32:20,294 [ scc.git] DEBUG Calling 'git remote' 2025-09-07 00:32:20,297 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push Update component versions Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Commit all component version changes Entering 'omero-dropbox' Entering 'omero-marshal' Entering 'omero-py' Entering 'omero-scripts' Entering 'omero-web' Entering 'omero-dropbox' HEAD detached from 01fa0c5 nothing to commit, working tree clean Entering 'omero-marshal' HEAD detached from 6d44f66 nothing to commit, working tree clean Entering 'omero-py' HEAD detached from 70b6235a nothing to commit, working tree clean Entering 'omero-scripts' HEAD detached from 573db34 nothing to commit, working tree clean Entering 'omero-web' HEAD detached from 2a7c4d2e3 nothing to commit, working tree clean HEAD detached from e505e49 nothing to commit, working tree clean 2025-09-07 00:32:50,067 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS