![[Jenkins]](/jenkins/static/fb75e5c0/images/svgs/logo.svg){kind=logo}
Started by upstream project "Trigger" build number 625 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-python-superbuild-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-python-superbuild-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 89851408b797e66df0f2e993b5e6fc50984c08a1 (refs/remotes/origin/master) Commit message: "Merge pull request #330 from ome/dependabot/submodules/omero-scripts-03b9116" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-python-superbuild-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-python-superbuild.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-python-superbuild.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-python-superbuild.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 89851408b797e66df0f2e993b5e6fc50984c08a1 # timeout=10 > git rev-list --no-walk 89851408b797e66df0f2e993b5e6fc50984c08a1 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-py.url # timeout=10 > git config -f .gitmodules --get submodule.omero-py.path # timeout=10 > git config --get submodule.omero-web.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web.path # timeout=10 > git config --get submodule.omero-marshal.url # timeout=10 > git config -f .gitmodules --get submodule.omero-marshal.path # timeout=10 > git config --get submodule.omero-dropbox.url # timeout=10 > git config -f .gitmodules --get submodule.omero-dropbox.path # timeout=10 > git config --get submodule.omero-scripts.url # timeout=10 > git config -f .gitmodules --get submodule.omero-scripts.path # timeout=10 > git submodule update --init --recursive omero-py # timeout=10 > git submodule update --init --recursive omero-web # timeout=10 > git submodule update --init --recursive omero-marshal # timeout=10 > git submodule update --init --recursive omero-dropbox # timeout=10 > git submodule update --init --recursive omero-scripts # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 553 [Pipeline] sh + pushd build ~/workspace/OMERO-python-superbuild-push/build ~/workspace/OMERO-python-superbuild-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-python-superbuild-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.15-py3-none-any.whl.metadata (25 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.4 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.1-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.8.3-py3-none-any.whl.metadata (2.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.1-cp311-abi3-manylinux_2_34_x86_64.whl (4.6 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel.yaml-0.18.15-py3-none-any.whl (119 kB) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.2 certifi-2025.8.3 cffi-2.0.0 charset_normalizer-3.4.3 cryptography-46.0.1 future-1.0.0 idna-3.10 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.0 requests-2.32.5 ruamel.yaml-0.18.15 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-python-superbuild.git + BASE_REPO=omero-python-superbuild.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-python-superbuild-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-python-superbuild-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-python-superbuild-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-09-21 00:28:20,786 [ scc.config] DEBUG Found github.token 2025-09-21 00:28:20,787 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-21 00:28:20,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:21,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:21,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-21 00:28:21,820 [ scc.gh] DEBUG 4388 remaining from 5000 (Reset at 00:09 2025-09-21 00:28:21,821 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-21 00:28:21,823 [ scc.git] DEBUG Check current status 2025-09-21 00:28:21,823 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:21,825 [ scc.git] DEBUG 8985140 Merge pull request #330 from ome/dependabot/submodules/omero-scripts-03b9116 2025-09-21 00:28:21,826 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:21,864 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-21 00:28:21,867 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-21 00:28:21,872 [ scc.git] DEBUG 70b6235a7283f1729225c4c3c24f01dfe97ae12b omero-py (v5.21.0-5-g70b6235a) 2025-09-21 00:28:21,875 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-21 00:28:21,879 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-21 00:28:21,882 [ scc.config] DEBUG Found remote.origin.url 2025-09-21 00:28:22,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-09-21 00:28:22,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-21 00:28:23,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-21 00:28:23,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-21 00:28:24,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-21 00:28:24,104 [ scc.git] DEBUG Resetting... 2025-09-21 00:28:24,104 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-21 00:28:24,108 [ scc.git] DEBUG HEAD is now at 8985140 Merge pull request #330 from ome/dependabot/submodules/omero-scripts-03b9116 2025-09-21 00:28:24,108 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-21 00:28:24,159 [ scc.git] DEBUG Check current status 2025-09-21 00:28:24,160 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:24,162 [ scc.git] DEBUG 8985140 Merge pull request #330 from ome/dependabot/submodules/omero-scripts-03b9116 2025-09-21 00:28:24,162 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:24,201 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-21 00:28:24,204 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-21 00:28:24,208 [ scc.git] DEBUG 70b6235a7283f1729225c4c3c24f01dfe97ae12b omero-py (v5.21.0-5-g70b6235a) 2025-09-21 00:28:24,211 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-21 00:28:24,215 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-21 00:28:24,216 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-21 00:28:24,216 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-21 00:28:24,216 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-21 00:28:24,216 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-21 00:28:24,216 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-21 00:28:24,216 [ scc.repo] DEBUG ## PRs found: 2025-09-21 00:28:24,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None 2025-09-21 00:28:25,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/331 HTTP/1.1" 200 None 2025-09-21 00:28:25,124 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-21 00:28:25,124 [ scc.repo] DEBUG - PR 331 dependabot[bot] 'Bump omero-py from `70b6235` to `edf7ff5`' 2025-09-21 00:28:25,124 [ scc.repo] DEBUG ## Branches found: 2025-09-21 00:28:25,125 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:25,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:25,127 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-21 00:28:25,128 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-21 00:28:25,129 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-21 00:28:25,131 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-21 00:28:25,133 [ scc.git] DEBUG Already up to date. 2025-09-21 00:28:25,133 [ scc.git] DEBUG Calling 'git fetch origin pull/331/head' 2025-09-21 00:28:25,417 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-09-21 00:28:25,417 [ scc.git] DEBUG * branch refs/pull/331/head -> FETCH_HEAD 2025-09-21 00:28:25,423 [ scc.git] DEBUG ## Unique users: [] 2025-09-21 00:28:25,423 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:25,423 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:25,425 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...87eaea59da5804987cb50dad0069813c3d859b4c' 2025-09-21 00:28:25,427 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:25,429 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 331 (Bump omero-py from `70b6235` to `edf7ff5`) 87eaea59da5804987cb50dad0069813c3d859b4c' 2025-09-21 00:28:25,436 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:28:25,439 [ scc.git] DEBUG omero-py | 2 +- 2025-09-21 00:28:25,439 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-21 00:28:25,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:25,588 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-21 00:28:25,641 [ scc.git] DEBUG Submodule path 'omero-py': checked out 'edf7ff58e57e27228b5ea00d94d4a0932978788b' 2025-09-21 00:28:25,642 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:25,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:25,644 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-21 00:28:25,671 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f8a01577150> has no local changes 2025-09-21 00:28:25,671 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-python-superbuild Already up to date. Merged PRs: - PR 331 dependabot[bot] 'Bump omero-py from `70b6235` to `edf7ff5`' Generated by OMERO-python-superbuild-push#525 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/)' 2025-09-21 00:28:25,692 [ scc.git] DEBUG [detached HEAD f2446ae] merge master -Dorg -Snone 2025-09-21 00:28:25,692 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-09-21 00:28:25,692 [ scc.merge] INFO Already up to date. 2025-09-21 00:28:25,692 [ scc.merge] INFO 2025-09-21 00:28:25,692 [ scc.merge] INFO Merged PRs: 2025-09-21 00:28:25,692 [ scc.merge] INFO - PR 331 dependabot[bot] 'Bump omero-py from `70b6235` to `edf7ff5`' 2025-09-21 00:28:25,692 [ scc.merge] INFO 2025-09-21 00:28:25,692 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-21 00:28:25,692 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'omero-dropbox' Synchronizing submodule url for 'omero-marshal' Synchronizing submodule url for 'omero-py' Synchronizing submodule url for 'omero-scripts' Synchronizing submodule url for 'omero-web' Merge all submodules using repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-09-21 00:28:27,558 [ scc.config] DEBUG Found github.token 2025-09-21 00:28:27,559 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-21 00:28:27,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:28,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:28,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-21 00:28:28,585 [ scc.gh] DEBUG 4378 remaining from 5000 (Reset at 00:09 2025-09-21 00:28:28,585 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-21 00:28:28,588 [ scc.git] DEBUG Check current status 2025-09-21 00:28:28,588 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:28,590 [ scc.git] DEBUG f2446ae merge master -Dorg -Snone 2025-09-21 00:28:28,590 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:28,629 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-21 00:28:28,632 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-21 00:28:28,636 [ scc.git] DEBUG edf7ff58e57e27228b5ea00d94d4a0932978788b omero-py (v5.21.1-1-gedf7ff58) 2025-09-21 00:28:28,640 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-21 00:28:28,643 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-21 00:28:28,645 [ scc.config] DEBUG Found remote.origin.url 2025-09-21 00:28:28,646 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-09-21 00:28:28,647 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-scripts: base-branch: develop 2025-09-21 00:28:29,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild HTTP/1.1" 200 None 2025-09-21 00:28:29,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-21 00:28:30,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-21 00:28:30,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-21 00:28:30,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-21 00:28:30,930 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:28:30,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-21 00:28:30,974 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-21 00:28:30,976 [ scc.git] DEBUG Check current status 2025-09-21 00:28:30,976 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:30,978 [ scc.git] DEBUG 01fa0c5 Merge pull request #24 from jburel/build 2025-09-21 00:28:30,979 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:31,016 [ scc.config] DEBUG Found remote.origin.url 2025-09-21 00:28:31,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox HTTP/1.1" 200 None 2025-09-21 00:28:31,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-21 00:28:32,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-21 00:28:32,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-21 00:28:33,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-21 00:28:33,208 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:28:33,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:28:33,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-21 00:28:33,245 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-21 00:28:33,247 [ scc.git] DEBUG Check current status 2025-09-21 00:28:33,247 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:33,249 [ scc.git] DEBUG 6d44f66 Merge pull request #82 from jburel/build 2025-09-21 00:28:33,250 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:33,287 [ scc.config] DEBUG Found remote.origin.url 2025-09-21 00:28:33,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal HTTP/1.1" 200 None 2025-09-21 00:28:34,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-21 00:28:34,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-21 00:28:35,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-21 00:28:35,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-21 00:28:35,554 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:28:35,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:28:35,591 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-21 00:28:35,591 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-21 00:28:35,593 [ scc.git] DEBUG Check current status 2025-09-21 00:28:35,593 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:35,595 [ scc.git] DEBUG edf7ff58 Bump version: 5.21.1 → 5.21.2.dev0 2025-09-21 00:28:35,595 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:35,632 [ scc.config] DEBUG Found remote.origin.url 2025-09-21 00:28:36,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py HTTP/1.1" 200 None 2025-09-21 00:28:36,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-21 00:28:36,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-21 00:28:37,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-21 00:28:37,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-21 00:28:37,747 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:28:37,783 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:28:37,784 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-21 00:28:37,784 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-21 00:28:37,786 [ scc.git] DEBUG Check current status 2025-09-21 00:28:37,786 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:37,788 [ scc.git] DEBUG 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-21 00:28:37,788 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:37,825 [ scc.config] DEBUG Found remote.origin.url 2025-09-21 00:28:37,825 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-09-21 00:28:38,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts HTTP/1.1" 200 None 2025-09-21 00:28:38,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-21 00:28:39,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-21 00:28:39,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-21 00:28:40,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-21 00:28:40,025 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:28:40,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:28:40,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-21 00:28:40,062 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-21 00:28:40,064 [ scc.git] DEBUG Check current status 2025-09-21 00:28:40,064 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:40,066 [ scc.git] DEBUG 2a7c4d2e3 Bump version: 5.29.2 → 5.29.3.dev0 2025-09-21 00:28:40,066 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:40,102 [ scc.config] DEBUG Found remote.origin.url 2025-09-21 00:28:40,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web HTTP/1.1" 200 None 2025-09-21 00:28:41,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-21 00:28:41,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-21 00:28:41,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-21 00:28:42,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-21 00:28:42,262 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:28:42,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:28:42,298 [ scc.git] DEBUG Resetting... 2025-09-21 00:28:42,298 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-21 00:28:42,302 [ scc.git] DEBUG HEAD is now at f2446ae merge master -Dorg -Snone 2025-09-21 00:28:42,302 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-21 00:28:42,349 [ scc.git] DEBUG Check current status 2025-09-21 00:28:42,349 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-21 00:28:42,351 [ scc.git] DEBUG f2446ae merge master -Dorg -Snone 2025-09-21 00:28:42,351 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-21 00:28:42,386 [ scc.git] DEBUG 01fa0c567e5391e5f920bd17d6e9eab210c9df67 omero-dropbox (v5.7.0-7-g01fa0c5) 2025-09-21 00:28:42,389 [ scc.git] DEBUG 6d44f663b2c9680b027c29da4e98430e03403bb1 omero-marshal (v0.9.0-13-g6d44f66) 2025-09-21 00:28:42,393 [ scc.git] DEBUG edf7ff58e57e27228b5ea00d94d4a0932978788b omero-py (v5.21.1-1-gedf7ff58) 2025-09-21 00:28:42,397 [ scc.git] DEBUG 03b9116196e1a799dd18a666559613d912be01a5 omero-scripts (v5.9.1-3-g03b9116) 2025-09-21 00:28:42,400 [ scc.git] DEBUG 2a7c4d2e3a98d90b3345039bf70dcc0d96b36135 omero-web (v5.29.2-1-g2a7c4d2e3) 2025-09-21 00:28:42,401 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-21 00:28:42,401 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-21 00:28:42,401 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-21 00:28:42,401 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-21 00:28:42,401 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-21 00:28:42,401 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-09-21 00:28:42,401 [ scc.repo] DEBUG ## PRs found: 2025-09-21 00:28:42,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/pulls HTTP/1.1" 200 None 2025-09-21 00:28:43,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/issues/331 HTTP/1.1" 200 None 2025-09-21 00:28:43,221 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-21 00:28:43,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/87eaea59da5804987cb50dad0069813c3d859b4c HTTP/1.1" 200 None 2025-09-21 00:28:44,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/87eaea59da5804987cb50dad0069813c3d859b4c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:28:44,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/commits/87eaea59da5804987cb50dad0069813c3d859b4c HTTP/1.1" 200 None 2025-09-21 00:28:45,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-python-superbuild/statuses/87eaea59da5804987cb50dad0069813c3d859b4c?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:28:45,131 [ scc.repo] DEBUG - PR 331 dependabot[bot] 'Bump omero-py from `70b6235` to `edf7ff5`' 2025-09-21 00:28:45,131 [ scc.repo] DEBUG ## Branches found: 2025-09-21 00:28:45,131 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:45,132 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:45,134 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-21 00:28:45,136 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-21 00:28:45,136 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-21 00:28:45,138 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-21 00:28:45,141 [ scc.git] DEBUG Already up to date. 2025-09-21 00:28:45,141 [ scc.git] DEBUG Calling 'git fetch origin pull/331/head' 2025-09-21 00:28:45,455 [ scc.git] DEBUG From https://github.com/ome/omero-python-superbuild 2025-09-21 00:28:45,455 [ scc.git] DEBUG * branch refs/pull/331/head -> FETCH_HEAD 2025-09-21 00:28:45,460 [ scc.git] DEBUG ## Unique users: [] 2025-09-21 00:28:45,460 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:45,460 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:45,462 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...87eaea59da5804987cb50dad0069813c3d859b4c' 2025-09-21 00:28:45,464 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:45,466 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 331 (Bump omero-py from `70b6235` to `edf7ff5`) 87eaea59da5804987cb50dad0069813c3d859b4c' 2025-09-21 00:28:45,468 [ scc.git] DEBUG Already up to date. 2025-09-21 00:28:45,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:45,608 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-21 00:28:45,646 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:45,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:45,647 [ scc.repo] DEBUG ## PRs found: 2025-09-21 00:28:46,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/pulls HTTP/1.1" 200 None 2025-09-21 00:28:46,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/26 HTTP/1.1" 200 None 2025-09-21 00:28:46,607 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-21 00:28:47,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a HTTP/1.1" 200 None 2025-09-21 00:28:47,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:28:48,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:28:48,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/38aa63d7d4014725060e4ecaa159922370485c5a HTTP/1.1" 200 None 2025-09-21 00:28:49,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/38aa63d7d4014725060e4ecaa159922370485c5a?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:28:49,238 [ scc.repo] DEBUG - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-21 00:28:49,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16 HTTP/1.1" 200 None 2025-09-21 00:28:50,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/issues/16/comments HTTP/1.1" 200 None 2025-09-21 00:28:50,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-09-21 00:28:51,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:28:51,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/commits/f802993eba0b6514d0e31f0f7d5b996ffb54b452 HTTP/1.1" 200 None 2025-09-21 00:28:52,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-dropbox/statuses/f802993eba0b6514d0e31f0f7d5b996ffb54b452?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:28:52,234 [ scc.repo] DEBUG - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-09-21 00:28:52,234 [ scc.repo] DEBUG ## Branches found: 2025-09-21 00:28:52,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-21 00:28:52,234 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:52,235 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:52,237 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-21 00:28:52,239 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-21 00:28:52,239 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-21 00:28:52,242 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-21 00:28:52,244 [ scc.git] DEBUG Already up to date. 2025-09-21 00:28:52,244 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-09-21 00:28:52,528 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox 2025-09-21 00:28:52,528 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-09-21 00:28:52,532 [ scc.git] DEBUG Calling 'git fetch origin pull/26/head' 2025-09-21 00:28:52,807 [ scc.git] DEBUG From https://github.com/ome/omero-dropbox 2025-09-21 00:28:52,807 [ scc.git] DEBUG * branch refs/pull/26/head -> FETCH_HEAD 2025-09-21 00:28:52,811 [ scc.git] DEBUG ## Unique users: [] 2025-09-21 00:28:52,812 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:52,812 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:52,814 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-09-21 00:28:52,817 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:52,819 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Review all instances of whitelist/blacklist) f802993eba0b6514d0e31f0f7d5b996ffb54b452' 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsAbstractPlatformMonitor.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsDirectory.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsDropBox.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsLists.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsMac-10-5-Monitor.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsMonitor.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsMonitorServer.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsPyinotifyMonitor.py 2025-09-21 00:28:52,830 [ scc.git] DEBUG Auto-merging src/fsWin-XP-Monitor.py 2025-09-21 00:28:52,831 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsAbstractPlatformMonitor.py | 6 +++--- 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsDirectory.py | 46 ++++++++++++++++++++-------------------- 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsDropBox.py | 24 ++++++++++----------- 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsLists.py | 14 ++++++------ 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsMac-10-5-Monitor.py | 10 ++++----- 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsMonitor.py | 24 ++++++++++----------- 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsMonitorServer.py | 10 ++++----- 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsPyinotifyMonitor.py | 8 +++---- 2025-09-21 00:28:52,834 [ scc.git] DEBUG src/fsWin-XP-Monitor.py | 20 ++++++++--------- 2025-09-21 00:28:52,834 [ scc.git] DEBUG 9 files changed, 81 insertions(+), 81 deletions(-) 2025-09-21 00:28:52,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:52,977 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38aa63d7d4014725060e4ecaa159922370485c5a' 2025-09-21 00:28:52,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:52,982 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 26 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38aa63d7d4014725060e4ecaa159922370485c5a' 2025-09-21 00:28:52,990 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:28:52,992 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-21 00:28:52,992 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-21 00:28:53,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:28:53,378 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-21 00:28:53,414 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:28:53,414 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:28:53,416 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:28:53,450 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-21 00:28:53,453 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff42ecf3ad0> has no local changes 2025-09-21 00:28:53,453 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-python-superbuild-push#525 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/)' 2025-09-21 00:28:53,458 [ scc.git] DEBUG [detached HEAD 5be1e21] merge master -Dorg -Ssuccess-only 2025-09-21 00:28:53,459 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:28:53,459 [ scc.repo] DEBUG ## PRs found: 2025-09-21 00:28:53,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/pulls HTTP/1.1" 200 None 2025-09-21 00:28:54,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/85 HTTP/1.1" 200 None 2025-09-21 00:28:54,450 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-21 00:28:55,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8 HTTP/1.1" 200 None 2025-09-21 00:28:55,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:28:56,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:28:56,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1ff3bb78434dee715c2029077581cdbbfdaedce8 HTTP/1.1" 200 None 2025-09-21 00:28:57,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1ff3bb78434dee715c2029077581cdbbfdaedce8?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:28:57,000 [ scc.repo] DEBUG - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-21 00:28:57,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84 HTTP/1.1" 200 None 2025-09-21 00:28:57,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/84/comments HTTP/1.1" 200 None 2025-09-21 00:28:58,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69 HTTP/1.1" 200 None 2025-09-21 00:28:58,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/69/comments HTTP/1.1" 200 None 2025-09-21 00:28:59,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-09-21 00:28:59,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:00,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/commits/1cbe0bebb081ffedb835c966ecb434d33502ceca HTTP/1.1" 200 None 2025-09-21 00:29:00,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/statuses/1cbe0bebb081ffedb835c966ecb434d33502ceca?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:29:00,777 [ scc.repo] DEBUG - PR 69 will-moore 'Roi encoder allows Shape None' 2025-09-21 00:29:01,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34 HTTP/1.1" 200 None 2025-09-21 00:29:01,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/34/comments HTTP/1.1" 200 None 2025-09-21 00:29:02,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33 HTTP/1.1" 200 None 2025-09-21 00:29:02,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-marshal/issues/33/comments HTTP/1.1" 200 None 2025-09-21 00:29:02,660 [ scc.repo] DEBUG ## Branches found: 2025-09-21 00:29:02,661 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-21 00:29:02,661 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:02,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:02,663 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-21 00:29:02,665 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-21 00:29:02,665 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-21 00:29:02,668 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-21 00:29:02,670 [ scc.git] DEBUG Already up to date. 2025-09-21 00:29:02,670 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head' 2025-09-21 00:29:02,956 [ scc.git] DEBUG From https://github.com/ome/omero-marshal 2025-09-21 00:29:02,956 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD 2025-09-21 00:29:02,960 [ scc.git] DEBUG Calling 'git fetch origin pull/85/head' 2025-09-21 00:29:03,237 [ scc.git] DEBUG From https://github.com/ome/omero-marshal 2025-09-21 00:29:03,237 [ scc.git] DEBUG * branch refs/pull/85/head -> FETCH_HEAD 2025-09-21 00:29:03,241 [ scc.git] DEBUG ## Unique users: [] 2025-09-21 00:29:03,241 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:03,241 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:03,244 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-09-21 00:29:03,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:03,249 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Roi encoder allows Shape None) 1cbe0bebb081ffedb835c966ecb434d33502ceca' 2025-09-21 00:29:03,257 [ scc.git] DEBUG Auto-merging tests/unit/conftest.py 2025-09-21 00:29:03,257 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:03,260 [ scc.git] DEBUG omero_marshal/encode/encoders/roi.py | 5 +++-- 2025-09-21 00:29:03,260 [ scc.git] DEBUG tests/unit/conftest.py | 5 ++++- 2025-09-21 00:29:03,260 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 3 deletions(-) 2025-09-21 00:29:03,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:03,410 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1ff3bb78434dee715c2029077581cdbbfdaedce8' 2025-09-21 00:29:03,413 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:03,415 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 85 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1ff3bb78434dee715c2029077581cdbbfdaedce8' 2025-09-21 00:29:03,422 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:03,425 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-21 00:29:03,425 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-21 00:29:03,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:03,805 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-21 00:29:03,841 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:03,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:03,843 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:29:03,878 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-21 00:29:03,882 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff42ef1b1d0> has no local changes 2025-09-21 00:29:03,882 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-python-superbuild-push#525 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/)' 2025-09-21 00:29:03,887 [ scc.git] DEBUG [detached HEAD 0e915a3] merge master -Dorg -Ssuccess-only 2025-09-21 00:29:03,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:29:03,888 [ scc.repo] DEBUG ## PRs found: 2025-09-21 00:29:04,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/pulls HTTP/1.1" 200 None 2025-09-21 00:29:04,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/477 HTTP/1.1" 200 None 2025-09-21 00:29:05,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/477/comments HTTP/1.1" 200 None 2025-09-21 00:29:05,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/6b8569a782520a591ae88d8e84c1b2aeb2ea579f HTTP/1.1" 200 None 2025-09-21 00:29:06,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/6b8569a782520a591ae88d8e84c1b2aeb2ea579f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:06,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/6b8569a782520a591ae88d8e84c1b2aeb2ea579f/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:29:07,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/6b8569a782520a591ae88d8e84c1b2aeb2ea579f HTTP/1.1" 200 None 2025-09-21 00:29:07,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/6b8569a782520a591ae88d8e84c1b2aeb2ea579f?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:08,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/6b8569a782520a591ae88d8e84c1b2aeb2ea579f HTTP/1.1" 200 None 2025-09-21 00:29:08,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/6b8569a782520a591ae88d8e84c1b2aeb2ea579f/status HTTP/1.1" 200 None 2025-09-21 00:29:08,762 [ scc.repo] DEBUG - PR 477 glyg 'switches stop_event.isSet for .is_set, fixes #476' 2025-09-21 00:29:09,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/470 HTTP/1.1" 200 None 2025-09-21 00:29:09,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/470/comments HTTP/1.1" 200 None 2025-09-21 00:29:10,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/459 HTTP/1.1" 200 None 2025-09-21 00:29:10,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450 HTTP/1.1" 200 None 2025-09-21 00:29:11,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/450/comments HTTP/1.1" 200 None 2025-09-21 00:29:11,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443 HTTP/1.1" 200 None 2025-09-21 00:29:11,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/443/comments HTTP/1.1" 200 None 2025-09-21 00:29:11,986 [ scc.repo] DEBUG # ... Exclude label: exclude 2025-09-21 00:29:12,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408 HTTP/1.1" 200 None 2025-09-21 00:29:12,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/408/comments HTTP/1.1" 200 None 2025-09-21 00:29:13,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-09-21 00:29:13,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:14,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/5b69af339bf34bd4adcf16a7f6a03fafa2921804 HTTP/1.1" 200 None 2025-09-21 00:29:14,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/5b69af339bf34bd4adcf16a7f6a03fafa2921804?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:29:14,762 [ scc.repo] DEBUG - PR 408 jburel 'remove deprecated method' 2025-09-21 00:29:15,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396 HTTP/1.1" 200 None 2025-09-21 00:29:15,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/396/comments HTTP/1.1" 200 None 2025-09-21 00:29:16,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573 HTTP/1.1" 200 None 2025-09-21 00:29:16,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:17,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c2cf271ef27269131408acb10c7cc1ecaefb0573/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:29:17,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391 HTTP/1.1" 200 None 2025-09-21 00:29:18,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/391/comments HTTP/1.1" 200 None 2025-09-21 00:29:18,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-09-21 00:29:19,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:19,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/20da2ca68fa40df47b5436887597e9804098f023 HTTP/1.1" 200 None 2025-09-21 00:29:20,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/20da2ca68fa40df47b5436887597e9804098f023?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:29:20,155 [ scc.repo] DEBUG - PR 391 joshmoore 'Add jstack command' 2025-09-21 00:29:20,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332 HTTP/1.1" 200 None 2025-09-21 00:29:21,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/332/comments HTTP/1.1" 200 None 2025-09-21 00:29:21,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-09-21 00:29:22,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:22,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/c427fcd99373ad6c0c2d28d322827d0523ba7afc HTTP/1.1" 200 None 2025-09-21 00:29:22,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/c427fcd99373ad6c0c2d28d322827d0523ba7afc?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:29:22,970 [ scc.repo] DEBUG - PR 332 jburel 'Build conda' 2025-09-21 00:29:23,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299 HTTP/1.1" 200 None 2025-09-21 00:29:23,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/299/comments HTTP/1.1" 200 None 2025-09-21 00:29:24,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199 HTTP/1.1" 200 None 2025-09-21 00:29:24,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/issues/199/comments HTTP/1.1" 200 None 2025-09-21 00:29:25,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-09-21 00:29:25,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:26,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/commits/d9df94bbff36ef1f943c9ab1995cd60831e572ec HTTP/1.1" 200 None 2025-09-21 00:29:26,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-py/statuses/d9df94bbff36ef1f943c9ab1995cd60831e572ec?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:29:26,727 [ scc.repo] DEBUG - PR 199 joshmoore 'user: allow setting default group' 2025-09-21 00:29:26,728 [ scc.repo] DEBUG ## Branches found: 2025-09-21 00:29:26,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-21 00:29:26,728 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:26,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:26,730 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-21 00:29:26,732 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-21 00:29:26,732 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-21 00:29:26,735 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-21 00:29:26,738 [ scc.git] DEBUG Already up to date. 2025-09-21 00:29:26,738 [ scc.git] DEBUG Calling 'git fetch origin pull/199/head' 2025-09-21 00:29:27,028 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-21 00:29:27,028 [ scc.git] DEBUG * branch refs/pull/199/head -> FETCH_HEAD 2025-09-21 00:29:27,031 [ scc.git] DEBUG Calling 'git fetch origin pull/332/head' 2025-09-21 00:29:27,309 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-21 00:29:27,309 [ scc.git] DEBUG * branch refs/pull/332/head -> FETCH_HEAD 2025-09-21 00:29:27,313 [ scc.git] DEBUG Calling 'git fetch origin pull/391/head' 2025-09-21 00:29:27,595 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-21 00:29:27,595 [ scc.git] DEBUG * branch refs/pull/391/head -> FETCH_HEAD 2025-09-21 00:29:27,600 [ scc.git] DEBUG Calling 'git fetch origin pull/408/head' 2025-09-21 00:29:27,877 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-21 00:29:27,877 [ scc.git] DEBUG * branch refs/pull/408/head -> FETCH_HEAD 2025-09-21 00:29:27,881 [ scc.git] DEBUG Calling 'git fetch origin pull/477/head' 2025-09-21 00:29:28,325 [ scc.git] DEBUG From https://github.com/ome/omero-py 2025-09-21 00:29:28,325 [ scc.git] DEBUG * branch refs/pull/477/head -> FETCH_HEAD 2025-09-21 00:29:28,328 [ scc.git] DEBUG ## Unique users: [] 2025-09-21 00:29:28,328 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:28,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:28,330 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-09-21 00:29:28,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:28,343 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 199 (user: allow setting default group) d9df94bbff36ef1f943c9ab1995cd60831e572ec' 2025-09-21 00:29:28,363 [ scc.git] DEBUG Auto-merging src/omero/cli.py 2025-09-21 00:29:28,363 [ scc.git] DEBUG Auto-merging src/omero/plugins/user.py 2025-09-21 00:29:28,364 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:28,367 [ scc.git] DEBUG src/omero/cli.py | 6 ++++++ 2025-09-21 00:29:28,368 [ scc.git] DEBUG src/omero/plugins/user.py | 36 +++++++++++++++++++++++++++++++++--- 2025-09-21 00:29:28,368 [ scc.git] DEBUG 2 files changed, 39 insertions(+), 3 deletions(-) 2025-09-21 00:29:28,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:28,510 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-09-21 00:29:28,521 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:28,523 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 332 (Build conda) c427fcd99373ad6c0c2d28d322827d0523ba7afc' 2025-09-21 00:29:28,540 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:28,542 [ scc.git] DEBUG .github/workflows/install.yml | 37 +++++++++++++++++++++++++++++++++++++ 2025-09-21 00:29:28,542 [ scc.git] DEBUG connect.py | 11 +++++++++++ 2025-09-21 00:29:28,542 [ scc.git] DEBUG 2 files changed, 48 insertions(+) 2025-09-21 00:29:28,542 [ scc.git] DEBUG create mode 100644 .github/workflows/install.yml 2025-09-21 00:29:28,542 [ scc.git] DEBUG create mode 100644 connect.py 2025-09-21 00:29:28,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:28,922 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20da2ca68fa40df47b5436887597e9804098f023' 2025-09-21 00:29:28,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:28,935 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 391 (Add jstack command) 20da2ca68fa40df47b5436887597e9804098f023' 2025-09-21 00:29:28,954 [ scc.git] DEBUG Auto-merging src/omero/plugins/admin.py 2025-09-21 00:29:28,955 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:28,959 [ scc.git] DEBUG src/omero/plugins/admin.py | 61 ++++++++++++++++++++++++++++++++++++++++++++-- 2025-09-21 00:29:28,959 [ scc.git] DEBUG 1 file changed, 59 insertions(+), 2 deletions(-) 2025-09-21 00:29:29,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:29,322 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-09-21 00:29:29,333 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:29,335 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 408 (remove deprecated method) 5b69af339bf34bd4adcf16a7f6a03fafa2921804' 2025-09-21 00:29:29,365 [ scc.git] DEBUG Auto-merging src/omero/gateway/__init__.py 2025-09-21 00:29:29,366 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:29,372 [ scc.git] DEBUG src/omero/gateway/__init__.py | 36 ------------------------------------ 2025-09-21 00:29:29,372 [ scc.git] DEBUG 1 file changed, 36 deletions(-) 2025-09-21 00:29:29,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:29,712 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6b8569a782520a591ae88d8e84c1b2aeb2ea579f' 2025-09-21 00:29:29,723 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:29,725 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 477 (switches stop_event.isSet for .is_set, fixes #476) 6b8569a782520a591ae88d8e84c1b2aeb2ea579f' 2025-09-21 00:29:29,746 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:29,750 [ scc.git] DEBUG src/omero/util/__init__.py | 8 ++++---- 2025-09-21 00:29:29,750 [ scc.git] DEBUG src/omero_ext/pyinotify.py | 4 ++-- 2025-09-21 00:29:29,750 [ scc.git] DEBUG 2 files changed, 6 insertions(+), 6 deletions(-) 2025-09-21 00:29:30,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:30,109 [ scc.config] DEBUG Found github.token 2025-09-21 00:29:30,109 [ scc.git] DEBUG Adding comment to Pull Request #477. 2025-09-21 00:29:30,867 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/ome/omero-py/issues/477/comments HTTP/1.1" 201 1716 2025-09-21 00:29:30,867 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-21 00:29:30,903 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:30,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:30,905 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:29:30,940 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-21 00:29:30,946 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff42f268850> has no local changes 2025-09-21 00:29:30,947 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-py Excluded PRs: - PR 470 multimeric 'Faux import' (user: multimeric) - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 477 glyg 'switches stop_event.isSet for .is_set, fixes #476' Generated by OMERO-python-superbuild-push#525 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/)' 2025-09-21 00:29:30,952 [ scc.git] DEBUG [detached HEAD 38b7b6ed] merge master -Dorg -Ssuccess-only 2025-09-21 00:29:30,953 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:29:30,953 [ scc.git] INFO Overriding base-branch from master to develop 2025-09-21 00:29:30,953 [ scc.repo] DEBUG ## PRs found: 2025-09-21 00:29:31,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-09-21 00:29:31,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2025-09-21 00:29:32,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2025-09-21 00:29:32,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-21 00:29:33,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:34,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:29:34,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-21 00:29:35,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:29:35,089 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-21 00:29:35,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2025-09-21 00:29:36,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2025-09-21 00:29:36,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-21 00:29:37,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:37,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-21 00:29:38,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:29:38,023 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-21 00:29:38,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-09-21 00:29:38,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-09-21 00:29:39,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2025-09-21 00:29:39,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2025-09-21 00:29:39,957 [ scc.repo] DEBUG ## Branches found: 2025-09-21 00:29:39,957 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-21 00:29:39,957 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:39,957 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:39,959 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-09-21 00:29:39,961 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-21 00:29:39,961 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-09-21 00:29:39,964 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-09-21 00:29:39,967 [ scc.git] DEBUG Already up to date. 2025-09-21 00:29:39,967 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2025-09-21 00:29:40,250 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-09-21 00:29:40,250 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2025-09-21 00:29:40,254 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2025-09-21 00:29:40,530 [ scc.git] DEBUG From https://github.com/ome/omero-scripts 2025-09-21 00:29:40,530 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2025-09-21 00:29:40,534 [ scc.git] DEBUG ## Unique users: [] 2025-09-21 00:29:40,534 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:40,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:40,536 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-21 00:29:40,541 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:40,543 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-21 00:29:40,552 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree. 2025-09-21 00:29:40,552 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-21 00:29:40,553 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-21 00:29:40,555 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5' 2025-09-21 00:29:40,558 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-21 00:29:40,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:40,711 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-21 00:29:40,717 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5' 2025-09-21 00:29:40,720 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-python-superbuild-push#525](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2025-09-21 00:29:40,722 [ scc.config] DEBUG Found github.token 2025-09-21 00:29:40,722 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2025-09-21 00:29:40,723 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-21 00:29:40,727 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:40,729 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-21 00:29:40,737 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:29:40,740 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2025-09-21 00:29:40,740 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2025-09-21 00:29:41,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:29:41,104 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-21 00:29:41,139 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:29:41,139 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:29:41,141 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:29:41,176 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-21 00:29:41,179 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff42ed8bf10> has no local changes 2025-09-21 00:29:41,179 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-python-superbuild-push#525 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/)' 2025-09-21 00:29:41,184 [ scc.git] DEBUG [detached HEAD 0eed73e] merge master -Dorg -Ssuccess-only 2025-09-21 00:29:41,184 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:29:41,184 [ scc.repo] DEBUG ## PRs found: 2025-09-21 00:29:41,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/pulls HTTP/1.1" 200 None 2025-09-21 00:29:42,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/629 HTTP/1.1" 200 None 2025-09-21 00:29:42,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/628 HTTP/1.1" 200 None 2025-09-21 00:29:43,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-21 00:29:43,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:44,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:29:44,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-21 00:29:45,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/b8c7989c9900270d7cf27523f2649bbb903c7a60?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:45,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60 HTTP/1.1" 200 None 2025-09-21 00:29:45,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/b8c7989c9900270d7cf27523f2649bbb903c7a60/status HTTP/1.1" 200 None 2025-09-21 00:29:45,959 [ scc.repo] DEBUG - PR 628 jburel 'Add protocol required since Django4' 2025-09-21 00:29:46,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/619 HTTP/1.1" 200 None 2025-09-21 00:29:47,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-21 00:29:47,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:47,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:29:48,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-21 00:29:48,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/6dbfcebfee72e20f36a434fdc8850930d89acdac?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:49,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac HTTP/1.1" 200 None 2025-09-21 00:29:49,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/6dbfcebfee72e20f36a434fdc8850930d89acdac/status HTTP/1.1" 200 None 2025-09-21 00:29:49,878 [ scc.repo] DEBUG - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-09-21 00:29:50,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613 HTTP/1.1" 200 None 2025-09-21 00:29:50,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/613/comments HTTP/1.1" 200 None 2025-09-21 00:29:51,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f3c42d33bf789591b0515c28a15dceab6b82f0c6 HTTP/1.1" 200 None 2025-09-21 00:29:51,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f3c42d33bf789591b0515c28a15dceab6b82f0c6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:52,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f3c42d33bf789591b0515c28a15dceab6b82f0c6/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:29:52,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f3c42d33bf789591b0515c28a15dceab6b82f0c6 HTTP/1.1" 200 None 2025-09-21 00:29:53,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/f3c42d33bf789591b0515c28a15dceab6b82f0c6?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:53,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f3c42d33bf789591b0515c28a15dceab6b82f0c6 HTTP/1.1" 200 None 2025-09-21 00:29:54,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/f3c42d33bf789591b0515c28a15dceab6b82f0c6/status HTTP/1.1" 200 None 2025-09-21 00:29:54,282 [ scc.repo] DEBUG - PR 613 will-moore 'externalInfo display' 2025-09-21 00:29:54,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612 HTTP/1.1" 200 None 2025-09-21 00:29:55,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/612/comments HTTP/1.1" 200 None 2025-09-21 00:29:55,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-21 00:29:56,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:56,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:29:57,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-21 00:29:57,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06446bf912b361c22e46c5a0678b3146b91e7e26?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:29:58,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26 HTTP/1.1" 200 None 2025-09-21 00:29:58,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06446bf912b361c22e46c5a0678b3146b91e7e26/status HTTP/1.1" 200 None 2025-09-21 00:29:58,425 [ scc.repo] DEBUG - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-09-21 00:29:58,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604 HTTP/1.1" 200 None 2025-09-21 00:29:59,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/604/comments HTTP/1.1" 200 None 2025-09-21 00:29:59,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-21 00:30:00,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:00,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:30:01,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-21 00:30:01,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/15e1289cb1c1533c8606b9c9f745d1f24575bb7d?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:02,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d HTTP/1.1" 200 None 2025-09-21 00:30:02,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/15e1289cb1c1533c8606b9c9f745d1f24575bb7d/status HTTP/1.1" 200 None 2025-09-21 00:30:02,782 [ scc.repo] DEBUG - PR 604 will-moore 'Right panel perf' 2025-09-21 00:30:03,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/602 HTTP/1.1" 200 None 2025-09-21 00:30:03,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-21 00:30:04,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:04,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:30:05,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-21 00:30:05,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/9119372e9fef8cab0e212f02685c8715a3307539?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:06,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539 HTTP/1.1" 200 None 2025-09-21 00:30:06,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/9119372e9fef8cab0e212f02685c8715a3307539/status HTTP/1.1" 200 None 2025-09-21 00:30:06,634 [ scc.repo] DEBUG - PR 602 Tom-TBT 'Inherit all annotations' 2025-09-21 00:30:07,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596 HTTP/1.1" 200 None 2025-09-21 00:30:07,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/596/comments HTTP/1.1" 200 None 2025-09-21 00:30:08,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-21 00:30:08,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:09,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:30:09,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-21 00:30:10,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/3aae48f586d7b412538a45b34ddc471a26a286e8?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:10,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8 HTTP/1.1" 200 None 2025-09-21 00:30:10,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/3aae48f586d7b412538a45b34ddc471a26a286e8/status HTTP/1.1" 200 None 2025-09-21 00:30:10,914 [ scc.repo] DEBUG - PR 596 sukunis 'Linkify can parse anchor tag' 2025-09-21 00:30:11,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595 HTTP/1.1" 200 None 2025-09-21 00:30:11,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/595/comments HTTP/1.1" 200 None 2025-09-21 00:30:12,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-21 00:30:12,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:13,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-21 00:30:13,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-21 00:30:14,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/30278b64bb39134a3f1101b600d4a82256e6eaeb?per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:14,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb HTTP/1.1" 200 None 2025-09-21 00:30:15,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/30278b64bb39134a3f1101b600d4a82256e6eaeb/status HTTP/1.1" 200 None 2025-09-21 00:30:15,333 [ scc.repo] DEBUG - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-09-21 00:30:15,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535 HTTP/1.1" 200 None 2025-09-21 00:30:16,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/535/comments HTTP/1.1" 200 None 2025-09-21 00:30:16,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534 HTTP/1.1" 200 None 2025-09-21 00:30:17,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/534/comments HTTP/1.1" 200 None 2025-09-21 00:30:17,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-09-21 00:30:18,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:18,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005 HTTP/1.1" 200 None 2025-09-21 00:30:19,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/d328a0cbb5b49cd63929a8a6c6cf7a89a925d005?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:30:19,075 [ scc.repo] DEBUG - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-09-21 00:30:19,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527 HTTP/1.1" 200 None 2025-09-21 00:30:20,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/527/comments HTTP/1.1" 200 None 2025-09-21 00:30:20,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-09-21 00:30:21,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:21,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/5565fa5d8fdefd1a406a9951f80779817ea35767 HTTP/1.1" 200 None 2025-09-21 00:30:21,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/5565fa5d8fdefd1a406a9951f80779817ea35767?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:30:21,917 [ scc.repo] DEBUG - PR 527 will-moore 'Add some initial CSP settings to test' 2025-09-21 00:30:22,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168 HTTP/1.1" 200 None 2025-09-21 00:30:22,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/issues/168/comments HTTP/1.1" 200 None 2025-09-21 00:30:23,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None 2025-09-21 00:30:23,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-21 00:30:24,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/commits/06b0073db19eeccb9698860f75639084ad1b1200 HTTP/1.1" 200 None 2025-09-21 00:30:24,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web/statuses/06b0073db19eeccb9698860f75639084ad1b1200?per_page=1 HTTP/1.1" 200 2 2025-09-21 00:30:24,785 [ scc.repo] DEBUG - PR 168 stick 'Changes to nginx @maintenance handler' 2025-09-21 00:30:24,785 [ scc.repo] DEBUG ## Branches found: 2025-09-21 00:30:24,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-21 00:30:24,786 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:30:24,786 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:24,788 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-21 00:30:24,791 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-21 00:30:24,791 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-21 00:30:24,794 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-21 00:30:24,797 [ scc.git] DEBUG Already up to date. 2025-09-21 00:30:24,797 [ scc.git] DEBUG Calling 'git fetch origin pull/168/head' 2025-09-21 00:30:25,109 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:25,109 [ scc.git] DEBUG * branch refs/pull/168/head -> FETCH_HEAD 2025-09-21 00:30:25,113 [ scc.git] DEBUG Calling 'git fetch origin pull/527/head' 2025-09-21 00:30:25,400 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:25,400 [ scc.git] DEBUG * branch refs/pull/527/head -> FETCH_HEAD 2025-09-21 00:30:25,404 [ scc.git] DEBUG Calling 'git fetch origin pull/534/head' 2025-09-21 00:30:25,685 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:25,685 [ scc.git] DEBUG * branch refs/pull/534/head -> FETCH_HEAD 2025-09-21 00:30:25,689 [ scc.git] DEBUG Calling 'git fetch origin pull/595/head' 2025-09-21 00:30:25,966 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:25,966 [ scc.git] DEBUG * branch refs/pull/595/head -> FETCH_HEAD 2025-09-21 00:30:25,970 [ scc.git] DEBUG Calling 'git fetch origin pull/596/head' 2025-09-21 00:30:26,257 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:26,257 [ scc.git] DEBUG * branch refs/pull/596/head -> FETCH_HEAD 2025-09-21 00:30:26,261 [ scc.git] DEBUG Calling 'git fetch origin pull/602/head' 2025-09-21 00:30:26,537 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:26,537 [ scc.git] DEBUG * branch refs/pull/602/head -> FETCH_HEAD 2025-09-21 00:30:26,541 [ scc.git] DEBUG Calling 'git fetch origin pull/604/head' 2025-09-21 00:30:26,819 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:26,819 [ scc.git] DEBUG * branch refs/pull/604/head -> FETCH_HEAD 2025-09-21 00:30:26,823 [ scc.git] DEBUG Calling 'git fetch origin pull/612/head' 2025-09-21 00:30:27,106 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:27,106 [ scc.git] DEBUG * branch refs/pull/612/head -> FETCH_HEAD 2025-09-21 00:30:27,110 [ scc.git] DEBUG Calling 'git fetch origin pull/613/head' 2025-09-21 00:30:27,380 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:27,380 [ scc.git] DEBUG * branch refs/pull/613/head -> FETCH_HEAD 2025-09-21 00:30:27,384 [ scc.git] DEBUG Calling 'git fetch origin pull/619/head' 2025-09-21 00:30:27,663 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:27,663 [ scc.git] DEBUG * branch refs/pull/619/head -> FETCH_HEAD 2025-09-21 00:30:27,667 [ scc.git] DEBUG Calling 'git fetch origin pull/628/head' 2025-09-21 00:30:27,940 [ scc.git] DEBUG From https://github.com/ome/omero-web 2025-09-21 00:30:27,940 [ scc.git] DEBUG * branch refs/pull/628/head -> FETCH_HEAD 2025-09-21 00:30:27,944 [ scc.git] DEBUG ## Unique users: [] 2025-09-21 00:30:27,944 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:30:27,944 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:27,946 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06b0073db19eeccb9698860f75639084ad1b1200' 2025-09-21 00:30:27,953 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:27,955 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 168 (Changes to nginx @maintenance handler) 06b0073db19eeccb9698860f75639084ad1b1200' 2025-09-21 00:30:27,972 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:27,975 [ scc.git] DEBUG omeroweb/templates/nginx-development.conf.template | 2 +- 2025-09-21 00:30:27,975 [ scc.git] DEBUG omeroweb/templates/nginx-location.conf.template | 3 ++- 2025-09-21 00:30:27,975 [ scc.git] DEBUG omeroweb/templates/nginx.conf.template | 2 +- 2025-09-21 00:30:27,975 [ scc.git] DEBUG test/unit/reference_templates/nginx-development-withoptions.conf | 2 +- 2025-09-21 00:30:27,975 [ scc.git] DEBUG test/unit/reference_templates/nginx-development.conf | 2 +- 2025-09-21 00:30:27,975 [ scc.git] DEBUG test/unit/reference_templates/nginx-location-withoptions.conf | 3 ++- 2025-09-21 00:30:27,975 [ scc.git] DEBUG test/unit/reference_templates/nginx-location.conf | 3 ++- 2025-09-21 00:30:27,975 [ scc.git] DEBUG test/unit/reference_templates/nginx-withoptions.conf | 2 +- 2025-09-21 00:30:27,975 [ scc.git] DEBUG test/unit/reference_templates/nginx.conf | 2 +- 2025-09-21 00:30:27,975 [ scc.git] DEBUG test/unit/test_web.py | 1 + 2025-09-21 00:30:27,976 [ scc.git] DEBUG 10 files changed, 13 insertions(+), 9 deletions(-) 2025-09-21 00:30:28,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:28,145 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-09-21 00:30:28,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:28,153 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 527 (Add some initial CSP settings to test) 5565fa5d8fdefd1a406a9951f80779817ea35767' 2025-09-21 00:30:28,171 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-21 00:30:28,171 [ scc.git] DEBUG Auto-merging setup.py 2025-09-21 00:30:28,172 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:28,175 [ scc.git] DEBUG omeroweb/settings.py | 42 +++++++++++++++++++++++++++++++++++++++++- 2025-09-21 00:30:28,175 [ scc.git] DEBUG setup.py | 1 + 2025-09-21 00:30:28,175 [ scc.git] DEBUG 2 files changed, 42 insertions(+), 1 deletion(-) 2025-09-21 00:30:28,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:28,544 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-09-21 00:30:28,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:28,554 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 534 (get strings from omero.cmd.ERR and omero.CmdError correctly) d328a0cbb5b49cd63929a8a6c6cf7a89a925d005' 2025-09-21 00:30:28,573 [ scc.git] DEBUG Auto-merging omeroweb/webclient/webclient_gateway.py 2025-09-21 00:30:28,573 [ scc.git] DEBUG Auto-merging omeroweb/webgateway/marshal.py 2025-09-21 00:30:28,574 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:28,578 [ scc.git] DEBUG omeroweb/webclient/webclient_gateway.py | 2 +- 2025-09-21 00:30:28,578 [ scc.git] DEBUG omeroweb/webgateway/marshal.py | 4 ++-- 2025-09-21 00:30:28,578 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 3 deletions(-) 2025-09-21 00:30:28,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:28,968 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-09-21 00:30:28,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:28,977 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 595 (linkify supports urls that include {}[] characters) 30278b64bb39134a3f1101b600d4a82256e6eaeb' 2025-09-21 00:30:28,995 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:28,998 [ scc.git] DEBUG omeroweb/webclient/static/webclient/javascript/ome.webclient.actions.js | 2 +- 2025-09-21 00:30:28,998 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-21 00:30:29,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:29,359 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-09-21 00:30:29,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:29,369 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 596 (Linkify can parse anchor tag) 3aae48f586d7b412538a45b34ddc471a26a286e8' 2025-09-21 00:30:29,387 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:29,390 [ scc.git] DEBUG .../webclient/javascript/ome.webclient.actions.js | 26 ++++++++++++++++++++-- 2025-09-21 00:30:29,390 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2025-09-21 00:30:29,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:29,751 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9119372e9fef8cab0e212f02685c8715a3307539' 2025-09-21 00:30:29,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:29,761 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 602 (Inherit all annotations) 9119372e9fef8cab0e212f02685c8715a3307539' 2025-09-21 00:30:29,781 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:29,786 [ scc.git] DEBUG omeroweb/webclient/static/webclient/css/dusty.css | 1 - 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../javascript/ome.right_panel_comments_pane.js | 134 +++++++++++++++++++-- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../javascript/ome.right_panel_fileanns_pane.js | 80 +++++++++++- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../javascript/ome.right_panel_mapanns_pane.js | 6 +- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../javascript/ome.right_panel_ratings_pane.js | 33 ++++- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../javascript/ome.right_panel_tags_pane.js | 92 ++++++++++++-- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../webclient/annotations/comments_underscore.html | 58 +++++++-- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../webclient/annotations/fileanns_underscore.html | 81 ++++++++----- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../webclient/annotations/mapanns_underscore.html | 4 + 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../webclient/annotations/ratings_underscore.html | 4 +- 2025-09-21 00:30:29,786 [ scc.git] DEBUG .../webclient/annotations/tags_underscore.html | 30 +++-- 2025-09-21 00:30:29,786 [ scc.git] DEBUG 11 files changed, 447 insertions(+), 76 deletions(-) 2025-09-21 00:30:30,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:30,151 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-09-21 00:30:30,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:30,161 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 604 (Right panel perf) 15e1289cb1c1533c8606b9c9f745d1f24575bb7d' 2025-09-21 00:30:30,184 [ scc.git] DEBUG Auto-merging omeroweb/webclient/views.py 2025-09-21 00:30:30,185 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:30,192 [ scc.git] DEBUG omeroweb/webclient/controller/container.py | 66 ++++++++++------------ 2025-09-21 00:30:30,192 [ scc.git] DEBUG .../webclient/annotations/annotations_share.html | 12 +--- 2025-09-21 00:30:30,192 [ scc.git] DEBUG omeroweb/webclient/views.py | 51 ----------------- 2025-09-21 00:30:30,192 [ scc.git] DEBUG 3 files changed, 31 insertions(+), 98 deletions(-) 2025-09-21 00:30:30,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:30,601 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-09-21 00:30:30,608 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:30,610 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 612 (Allow top_links to wrap if too many for space) 06446bf912b361c22e46c5a0678b3146b91e7e26' 2025-09-21 00:30:30,628 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:30,632 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.body.css | 2 ++ 2025-09-21 00:30:30,632 [ scc.git] DEBUG .../webgateway/static/webgateway/css/ome.header.css | 21 +++++++++++---------- 2025-09-21 00:30:30,632 [ scc.git] DEBUG 2 files changed, 13 insertions(+), 10 deletions(-) 2025-09-21 00:30:30,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:30,986 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f3c42d33bf789591b0515c28a15dceab6b82f0c6' 2025-09-21 00:30:30,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:30,996 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 613 (externalInfo display) f3c42d33bf789591b0515c28a15dceab6b82f0c6' 2025-09-21 00:30:31,014 [ scc.git] DEBUG Auto-merging omeroweb/webclient/static/webclient/css/dusty.css 2025-09-21 00:30:31,015 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:31,019 [ scc.git] DEBUG omeroweb/webclient/static/webclient/css/dusty.css | 2 +- 2025-09-21 00:30:31,019 [ scc.git] DEBUG .../webclient/annotations/includes/toolbar.html | 44 +++++++++++++++++++++- 2025-09-21 00:30:31,019 [ scc.git] DEBUG .../webclient/annotations/metadata_general.html | 31 ++++++++++----- 2025-09-21 00:30:31,019 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 2 + 2025-09-21 00:30:31,019 [ scc.git] DEBUG 4 files changed, 67 insertions(+), 12 deletions(-) 2025-09-21 00:30:31,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:31,412 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-09-21 00:30:31,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:31,421 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 619 (Permit subpackages as app plugins) 6dbfcebfee72e20f36a434fdc8850930d89acdac' 2025-09-21 00:30:31,440 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-21 00:30:31,441 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:31,444 [ scc.git] DEBUG omeroweb/settings.py | 9 ++++----- 2025-09-21 00:30:31,444 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 5 deletions(-) 2025-09-21 00:30:31,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:31,816 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b8c7989c9900270d7cf27523f2649bbb903c7a60' 2025-09-21 00:30:31,823 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:31,825 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 628 (Add protocol required since Django4) b8c7989c9900270d7cf27523f2649bbb903c7a60' 2025-09-21 00:30:31,843 [ scc.git] DEBUG Auto-merging omeroweb/settings.py 2025-09-21 00:30:31,844 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-21 00:30:31,848 [ scc.git] DEBUG omeroweb/settings.py | 4 ++-- 2025-09-21 00:30:31,848 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2025-09-21 00:30:32,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:32,209 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-21 00:30:32,246 [ scc.git] DEBUG Get sha1 of %s 2025-09-21 00:30:32,246 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-21 00:30:32,248 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:30:32,284 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-21 00:30:32,292 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff42ed0d650> has no local changes 2025-09-21 00:30:32,292 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web Excluded PRs: - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) Already up to date. Merged PRs: - PR 168 stick 'Changes to nginx @maintenance handler' - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 628 jburel 'Add protocol required since Django4' Generated by OMERO-python-superbuild-push#525 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/)' 2025-09-21 00:30:32,299 [ scc.git] DEBUG [detached HEAD 8a7fb4ceb] merge master -Dorg -Ssuccess-only 2025-09-21 00:30:32,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:30:32,299 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-21 00:30:32,342 [ scc.config] DEBUG Found submodule.omero-dropbox.url 2025-09-21 00:30:32,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:32,615 [ scc.config] DEBUG Found submodule.omero-marshal.url 2025-09-21 00:30:33,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:33,017 [ scc.config] DEBUG Found submodule.omero-py.url 2025-09-21 00:30:33,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:33,423 [ scc.config] DEBUG Found submodule.omero-scripts.url 2025-09-21 00:30:33,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:33,821 [ scc.config] DEBUG Found submodule.omero-web.url 2025-09-21 00:30:34,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-21 00:30:34,225 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-21 00:30:34,248 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff42ede5650> has local changes 2025-09-21 00:30:34,248 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-python-superbuild Already up to date. Merged PRs: - PR 331 dependabot[bot] 'Bump omero-py from `70b6235` to `edf7ff5`' Repository: ome/omero-dropbox Already up to date. Merged PRs: - PR 16 joshmoore 'Review all instances of whitelist/blacklist' - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-marshal Excluded PRs: - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) - PR 34 chris-allan 'Initial support for Event' (exclude comment) - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) Already up to date. Merged PRs: - PR 69 will-moore 'Roi encoder allows Shape None' - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-py Excluded PRs: - PR 470 multimeric 'Faux import' (user: multimeric) - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) - PR 450 multimeric 'Add model stubs' (user: multimeric) - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) Already up to date. Merged PRs: - PR 199 joshmoore 'user: allow setting default group' - PR 332 jburel 'Build conda' - PR 391 joshmoore 'Add jstack command' - PR 408 jburel 'remove deprecated method' - PR 477 glyg 'switches stop_event.isSet for .is_set, fixes #476' Repository: ome/omero-scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Repository: ome/omero-web Excluded PRs: - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 535 will-moore 'Initial working browser history' (stage: draft) Already up to date. Merged PRs: - PR 168 stick 'Changes to nginx @maintenance handler' - PR 527 will-moore 'Add some initial CSP settings to test' - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' - PR 595 sukunis 'linkify supports urls that include {}[] characters' - PR 596 sukunis 'Linkify can parse anchor tag' - PR 602 Tom-TBT 'Inherit all annotations' - PR 604 will-moore 'Right panel perf' - PR 612 will-moore 'Allow top_links to wrap if too many for space' - PR 613 will-moore 'externalInfo display' - PR 619 DavidStirling 'Permit subpackages as app plugins' - PR 628 jburel 'Add protocol required since Django4' Generated by OMERO-python-superbuild-push#525 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-python-superbuild-push/525/)' 2025-09-21 00:30:34,254 [ scc.git] DEBUG [detached HEAD b8d6b55] merge master -Dorg -Ssuccess-only 2025-09-21 00:30:34,254 [ scc.git] DEBUG 6 files changed, 10 insertions(+), 10 deletions(-) 2025-09-21 00:30:34,254 [ scc.merge] INFO Repository: ome/omero-python-superbuild 2025-09-21 00:30:34,254 [ scc.merge] INFO Already up to date. 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Merged PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 331 dependabot[bot] 'Bump omero-py from `70b6235` to `edf7ff5`' 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Repository: ome/omero-dropbox 2025-09-21 00:30:34,255 [ scc.merge] INFO Already up to date. 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Merged PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 16 joshmoore 'Review all instances of whitelist/blacklist' 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 26 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Repository: ome/omero-marshal 2025-09-21 00:30:34,255 [ scc.merge] INFO Excluded PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 84 joshmoore 'New JSON-LD context-based version' (stage: draft) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 34 chris-allan 'Initial support for Event' (exclude comment) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 33 chris-allan 'Encode/Decode Experimenters with ExperimenterGroup' (exclude comment) 2025-09-21 00:30:34,255 [ scc.merge] INFO Already up to date. 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Merged PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 69 will-moore 'Roi encoder allows Shape None' 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 85 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Repository: ome/omero-py 2025-09-21 00:30:34,255 [ scc.merge] INFO Excluded PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 470 multimeric 'Faux import' (user: multimeric) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 459 Tom-TBT 'Wrapper improvements for ROIs' (stage: draft) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 450 multimeric 'Add model stubs' (user: multimeric) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 443 sbesson 'Gateway tests: remove logic downloading public DV files for testing' (label: exclude) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 396 joshmoore 'Config property for passing environment variables (see #395)' (status: failure) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 299 joshmoore 'Add parents and children to omero obj' (exclude comment) 2025-09-21 00:30:34,255 [ scc.merge] INFO Already up to date. 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Merged PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 199 joshmoore 'user: allow setting default group' 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 332 jburel 'Build conda' 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 391 joshmoore 'Add jstack command' 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 408 jburel 'remove deprecated method' 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 477 glyg 'switches stop_event.isSet for .is_set, fixes #476' 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Repository: ome/omero-scripts 2025-09-21 00:30:34,255 [ scc.merge] INFO Excluded PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2025-09-21 00:30:34,255 [ scc.merge] INFO Already up to date. 2025-09-21 00:30:34,255 [ scc.merge] INFO 2025-09-21 00:30:34,255 [ scc.merge] INFO Merged PRs: 2025-09-21 00:30:34,255 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-21 00:30:34,256 [ scc.merge] INFO 2025-09-21 00:30:34,256 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-21 00:30:34,256 [ scc.merge] INFO 2025-09-21 00:30:34,256 [ scc.merge] INFO Repository: ome/omero-web 2025-09-21 00:30:34,256 [ scc.merge] INFO Excluded PRs: 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 629 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 535 will-moore 'Initial working browser history' (stage: draft) 2025-09-21 00:30:34,256 [ scc.merge] INFO Already up to date. 2025-09-21 00:30:34,256 [ scc.merge] INFO 2025-09-21 00:30:34,256 [ scc.merge] INFO Merged PRs: 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 168 stick 'Changes to nginx @maintenance handler' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 527 will-moore 'Add some initial CSP settings to test' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 534 will-moore 'get strings from omero.cmd.ERR and omero.CmdError correctly' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 595 sukunis 'linkify supports urls that include {}[] characters' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 596 sukunis 'Linkify can parse anchor tag' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 602 Tom-TBT 'Inherit all annotations' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 604 will-moore 'Right panel perf' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 612 will-moore 'Allow top_links to wrap if too many for space' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 613 will-moore 'externalInfo display' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 619 DavidStirling 'Permit subpackages as app plugins' 2025-09-21 00:30:34,256 [ scc.merge] INFO - PR 628 jburel 'Add protocol required since Django4' 2025-09-21 00:30:34,256 [ scc.merge] INFO 2025-09-21 00:30:34,256 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-21 00:30:34,256 [ scc.git] DEBUG Calling 'git remote' 2025-09-21 00:30:34,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-dropbox 2025-09-21 00:30:34,258 [ scc.git] DEBUG Calling 'git remote' 2025-09-21 00:30:34,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:30:34,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-marshal 2025-09-21 00:30:34,260 [ scc.git] DEBUG Calling 'git remote' 2025-09-21 00:30:34,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:30:34,262 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-py 2025-09-21 00:30:34,262 [ scc.git] DEBUG Calling 'git remote' 2025-09-21 00:30:34,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:30:34,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-scripts 2025-09-21 00:30:34,264 [ scc.git] DEBUG Calling 'git remote' 2025-09-21 00:30:34,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push 2025-09-21 00:30:34,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push/omero-web 2025-09-21 00:30:34,266 [ scc.git] DEBUG Calling 'git remote' 2025-09-21 00:30:34,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-python-superbuild-push Update component versions Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found Downloading https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-build-build/lastSuccessfulBuild/artifact/omero-blitz/build/distributions/omero-blitz-5.8.1-python.zip ... Traceback (most recent call last): File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 150, in <module> download_blitz_target() File "/home/omero/workspace/OMERO-python-superbuild-push/omero-py/setup.py", line 83, in download_blitz_target resp = urlopen(loc) ^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 216, in urlopen return opener.open(url, data, timeout) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 525, in open response = meth(req, response) ^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 634, in http_response response = self.parent.error( ^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 563, in error return self._call_chain(*args) ^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 496, in _call_chain result = func(*args) ^^^^^^^^^^^ File "/usr/lib64/python3.11/urllib/request.py", line 643, in http_error_default raise HTTPError(req.full_url, code, msg, hdrs, fp) urllib.error.HTTPError: HTTP Error 404: Not Found grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Commit all component version changes Entering 'omero-dropbox' Entering 'omero-marshal' Entering 'omero-py' Entering 'omero-scripts' Entering 'omero-web' Entering 'omero-dropbox' HEAD detached from 01fa0c5 nothing to commit, working tree clean Entering 'omero-marshal' HEAD detached from 6d44f66 nothing to commit, working tree clean Entering 'omero-py' HEAD detached from edf7ff58 nothing to commit, working tree clean Entering 'omero-scripts' HEAD detached from 03b9116 nothing to commit, working tree clean Entering 'omero-web' HEAD detached from 2a7c4d2e3 nothing to commit, working tree clean HEAD detached from 8985140 nothing to commit, working tree clean 2025-09-21 00:31:02,141 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-python-superbuild/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS