12:44:22 Started by upstream project "Trigger" build number 5
12:44:22 originally caused by:
12:44:22 Started by user devspace
12:44:22 Running as SYSTEM
12:44:22 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
12:44:23 [OMERO-server] $ /bin/bash -xe /tmp/jenkins792120830406375194.sh
12:44:23 + source /home/settings.env
12:44:23 ++ OMERO_DB_HOST=pg
12:44:23 ++ OMERO_DB_USER=postgres
12:44:23 ++ OMERO_DB_PASS=
12:44:23 ++ OMERO_ROOT_PASS=omero
12:44:23 ++ OMERO_DATA_DIR=/OMERO
12:44:23 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:44:23 + OMERO_DB_NAME=OMERO-server
12:44:23 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:44:23 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:44:23 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:44:23 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:44:23 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
12:44:23 + rm -rf /home/omero/workspace/OMERO-server/.venv3
12:44:23 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
12:44:44 + '[' true = true ']'
12:44:44 + dropdb -h pg -U postgres OMERO-server
12:44:44 dropdb: error: database removal failed: ERROR: database "OMERO-server" does not exist
12:44:44 + echo 'First run or already exists'
12:44:44 First run or already exists
12:44:44 + rm -rf /home/omero/omero-server-data
12:44:44 + rm -rf '/home/omero/workspace/OMERO-server/*'
12:44:47 Copied 1 artifact from "OMERO-build" build number 1
12:44:47 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 1
12:44:47 Copied 2 artifacts from "OMERO-build-build" build number 9
12:44:47 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 1
12:44:48 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4751961880282660699.sh
12:44:48 + source /home/settings.env
12:44:48 ++ OMERO_DB_HOST=pg
12:44:48 ++ OMERO_DB_USER=postgres
12:44:48 ++ OMERO_DB_PASS=
12:44:48 ++ OMERO_ROOT_PASS=omero
12:44:48 ++ OMERO_DATA_DIR=/OMERO
12:44:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:44:48 + OMERO_DB_NAME=OMERO-server
12:44:48 + OMERO_DATA_DIR=/home/omero/omero-server-data
12:44:48 + mkdir -p /home/omero/omero-server-data
12:44:48 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
12:44:48 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:44:48 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
12:44:48 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:44:48 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
12:44:48 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:44:48 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
12:44:48 ++ ls OMERO.server-5.6.3-622-cc67600ce0-ice36-b1.zip
12:44:48 + ZIP=OMERO.server-5.6.3-622-cc67600ce0-ice36-b1.zip
12:44:48 + '[' '!' -z '' ']'
12:44:48 + DIST=OMERO.server-5.6.3-622-cc67600ce0-ice36-b1
12:44:48 + unzip OMERO.server-5.6.3-622-cc67600ce0-ice36-b1.zip
12:44:48 Archive: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1.zip
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/blitz/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/grid/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/profiles/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/error/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/grid/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/luts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/luts/janelia/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/luts/matplotlib/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/luts/ncsa_paledit/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/luts/seaborn/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/luts/wcif/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/omero/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/omero/analysis_scripts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/omero/annotation_scripts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/omero/export_scripts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/omero/figure_scripts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/omero/import_scripts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/scripts/omero/util_scripts/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/server/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/share/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/share/licenses/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/misc/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__1/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__10/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__11/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__2/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__3/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__4/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__5/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__6/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__7/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__8/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3A__9/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3__4/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3__5/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3__6/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO3__7/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO4.1__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO4.2__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO4.2__0/t/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO4.3__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO4.4__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO4__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.0__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.1__1/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.2__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.3__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.4DEV__1/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.4DEV__2/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.4DEV__3/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/sql/psql/OMERO5.4__0/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/var/
12:44:48 creating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/var/tmp/
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/LICENSE.txt
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/backup.cfg
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/blitz/mail-senders.example
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/blitz/mail-server.example
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/build.properties
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/env.bat
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/env.sh
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/hibernate.properties
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/ice.config
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/logback-cli.xml
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/logback-indexing-cli.xml
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/logback-indexing.xml
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/logback.xml
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/mime.types
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/node1.cfg
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/node2.cfg
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/omero.properties
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/profiles/psql
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/rollover.cfg
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/Windows.cfg
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/error/maintainance.html
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/grid/README
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/grid/default.xml
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/grid/templates.xml
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/grid/windefault.xml
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/ice.config
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/internal.cfg
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/master.cfg
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/templates/robot.template
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/etc/testdropbox.config
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/history.rst
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/OMEZarrReader.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/accessors-smart.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/activation.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/aggdesigner-algorithm.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/aircompressor.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/antlr.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/aopalliance.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/apiguardian-api.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/asm.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/avatica-core.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/avatica-metrics.jar
12:44:48 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/aws-java-sdk-core.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/aws-java-sdk-kms.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/aws-java-sdk-s3.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/base.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-anim.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-awt-util.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-bridge.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-codec.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-constants.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-css.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-dom.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-ext.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-gvt.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-i18n.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-parser.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-script.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-shared-resources.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-svg-dom.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-svggen.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-transcoder.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-util.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/batik-xml.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/btm.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/caffeine.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/calcite-core.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/calcite-linq4j.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/cdm-core.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/checker-qual.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-beanutils.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-codec.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-collections.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-collections4.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-compiler.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-dbcp2.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-io.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-lang.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-lang3.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-logging.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-math.jar
12:44:49 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-math3.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/commons-pool2.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/dom4j.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/ehcache.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/error_prone_annotations.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/failureaccess.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/filters.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/fontbox.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/formats-api.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/formats-bsd.jar
12:44:50 inflating: OMERO.server-5.6.3-622-cc67600ce0-ice36-b1/lib/client/formats-gpl.jar
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12:45:01 + rm -f OMERO.server-5.6.3-622-cc67600ce0-ice36-b1.zip
12:45:01 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-622-cc67600ce0-ice36-b1 /home/omero/workspace/OMERO-server/OMERO.server
12:45:01 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
12:45:01 --2026-07-07 12:45:01-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
12:45:01 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
12:45:02 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
12:45:02 HTTP request sent, awaiting response... 200 OK
12:45:02 Length: 889211 (868K) [application/java-archive]
12:45:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
12:45:02
12:45:02 0K .......... .......... .......... .......... .......... 5% 115M 0s
12:45:02 50K .......... .......... .......... .......... .......... 11% 4.23M 0s
12:45:02 100K .......... .......... .......... .......... .......... 17% 4.67M 0s
12:45:02 150K .......... .......... .......... .......... .......... 23% 4.56M 0s
12:45:02 200K .......... .......... .......... .......... .......... 28% 34.3M 0s
12:45:02 250K .......... .......... .......... .......... .......... 34% 17.2M 0s
12:45:02 300K .......... .......... .......... .......... .......... 40% 13.5M 0s
12:45:02 350K .......... .......... .......... .......... .......... 46% 10.2M 0s
12:45:02 400K .......... .......... .......... .......... .......... 51% 25.4M 0s
12:45:02 450K .......... .......... .......... .......... .......... 57% 25.3M 0s
12:45:02 500K .......... .......... .......... .......... .......... 63% 24.8M 0s
12:45:02 550K .......... .......... .......... .......... .......... 69% 30.0M 0s
12:45:02 600K .......... .......... .......... .......... .......... 74% 14.9M 0s
12:45:02 650K .......... .......... .......... .......... .......... 80% 14.7M 0s
12:45:02 700K .......... .......... .......... .......... .......... 86% 28.2M 0s
12:45:02 750K .......... .......... .......... .......... .......... 92% 24.7M 0s
12:45:02 800K .......... .......... .......... .......... .......... 97% 48.8M 0s
12:45:02 850K .......... ........ 100% 150M=0.06s
12:45:02
12:45:02 2026-07-07 12:45:02 (13.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
12:45:02
12:45:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
12:45:02 --2026-07-07 12:45:02-- https://repo.maven.apache.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
12:45:02 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
12:45:02 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
12:45:02 HTTP request sent, awaiting response... 200 OK
12:45:02 Length: 73309 (72K) [application/java-archive]
12:45:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
12:45:02
12:45:02 0K .......... .......... .......... .......... .......... 69% 95.9M 0s
12:45:02 50K .......... .......... . 100% 18.7M=0.002s
12:45:02
12:45:02 2026-07-07 12:45:02 (42.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
12:45:02
12:45:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
12:45:02 --2026-07-07 12:45:02-- https://repo.maven.apache.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
12:45:02 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
12:45:02 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
12:45:02 HTTP request sent, awaiting response... 200 OK
12:45:02 Length: 63303 (62K) [application/java-archive]
12:45:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
12:45:02
12:45:02 0K .......... .......... .......... .......... .......... 80% 118M 0s
12:45:02 50K .......... . 100% 127M=0.001s
12:45:02
12:45:02 2026-07-07 12:45:02 (120 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
12:45:02
12:45:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
12:45:02 --2026-07-07 12:45:02-- https://repo.maven.apache.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
12:45:02 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
12:45:02 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
12:45:03 HTTP request sent, awaiting response... 200 OK
12:45:03 Length: 1271272 (1.2M) [application/java-archive]
12:45:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
12:45:03
12:45:03 0K .......... .......... .......... .......... .......... 4% 110M 0s
12:45:03 50K .......... .......... .......... .......... .......... 8% 3.91M 0s
12:45:03 100K .......... .......... .......... .......... .......... 12% 4.15M 0s
12:45:03 150K .......... .......... .......... .......... .......... 16% 4.54M 0s
12:45:03 200K .......... .......... .......... .......... .......... 20% 4.28M 0s
12:45:03 250K .......... .......... .......... .......... .......... 24% 21.8M 0s
12:45:03 300K .......... .......... .......... .......... .......... 28% 26.1M 0s
12:45:03 350K .......... .......... .......... .......... .......... 32% 17.1M 0s
12:45:03 400K .......... .......... .......... .......... .......... 36% 10.5M 0s
12:45:03 450K .......... .......... .......... .......... .......... 40% 20.7M 0s
12:45:03 500K .......... .......... .......... .......... .......... 44% 24.8M 0s
12:45:03 550K .......... .......... .......... .......... .......... 48% 25.2M 0s
12:45:03 600K .......... .......... .......... .......... .......... 52% 25.5M 0s
12:45:03 650K .......... .......... .......... .......... .......... 56% 22.3M 0s
12:45:03 700K .......... .......... .......... .......... .......... 60% 12.9M 0s
12:45:03 750K .......... .......... .......... .......... .......... 64% 50.7M 0s
12:45:03 800K .......... .......... .......... .......... .......... 68% 12.9M 0s
12:45:03 850K .......... .......... .......... .......... .......... 72% 45.3M 0s
12:45:03 900K .......... .......... .......... .......... .......... 76% 20.9M 0s
12:45:03 950K .......... .......... .......... .......... .......... 80% 11.0M 0s
12:45:03 1000K .......... .......... .......... .......... .......... 84% 27.7M 0s
12:45:03 1050K .......... .......... .......... .......... .......... 88% 19.4M 0s
12:45:03 1100K .......... .......... .......... .......... .......... 92% 79.2M 0s
12:45:03 1150K .......... .......... .......... .......... .......... 96% 18.6M 0s
12:45:03 1200K .......... .......... .......... .......... . 100% 16.2M=0.1s
12:45:03
12:45:03 2026-07-07 12:45:03 (12.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
12:45:03
12:45:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
12:45:03 --2026-07-07 12:45:03-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-core/1.12.659/aws-java-sdk-core-1.12.659.jar
12:45:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
12:45:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
12:45:03 HTTP request sent, awaiting response... 200 OK
12:45:03 Length: 1036468 (1012K) [application/java-archive]
12:45:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’
12:45:03
12:45:03 0K .......... .......... .......... .......... .......... 4% 76.1M 0s
12:45:03 50K .......... .......... .......... .......... .......... 9% 4.36M 0s
12:45:03 100K .......... .......... .......... .......... .......... 14% 4.48M 0s
12:45:03 150K .......... .......... .......... .......... .......... 19% 7.78M 0s
12:45:03 200K .......... .......... .......... .......... .......... 24% 8.90M 0s
12:45:03 250K .......... .......... .......... .......... .......... 29% 17.2M 0s
12:45:03 300K .......... .......... .......... .......... .......... 34% 16.3M 0s
12:45:03 350K .......... .......... .......... .......... .......... 39% 25.0M 0s
12:45:03 400K .......... .......... .......... .......... .......... 44% 14.6M 0s
12:45:03 450K .......... .......... .......... .......... .......... 49% 17.7M 0s
12:45:03 500K .......... .......... .......... .......... .......... 54% 43.9M 0s
12:45:03 550K .......... .......... .......... .......... .......... 59% 26.2M 0s
12:45:03 600K .......... .......... .......... .......... .......... 64% 23.0M 0s
12:45:03 650K .......... .......... .......... .......... .......... 69% 15.6M 0s
12:45:03 700K .......... .......... .......... .......... .......... 74% 12.9M 0s
12:45:03 750K .......... .......... .......... .......... .......... 79% 137M 0s
12:45:03 800K .......... .......... .......... .......... .......... 83% 26.9M 0s
12:45:03 850K .......... .......... .......... .......... .......... 88% 18.6M 0s
12:45:03 900K .......... .......... .......... .......... .......... 93% 20.2M 0s
12:45:03 950K .......... .......... .......... .......... .......... 98% 12.0M 0s
12:45:03 1000K .......... .. 100% 225M=0.07s
12:45:03
12:45:03 2026-07-07 12:45:03 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core-1.12.659.jar’ saved [1036468/1036468]
12:45:03
12:45:03 + for x in *.jar
12:45:03 + mv omero-zarr-pixel-buffer-0.7.1-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
12:45:03 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
12:45:03 ++ deactivate nondestructive
12:45:03 ++ '[' -n '' ']'
12:45:03 ++ '[' -n '' ']'
12:45:03 ++ hash -r
12:45:03 ++ '[' -n '' ']'
12:45:03 ++ unset VIRTUAL_ENV
12:45:03 ++ unset VIRTUAL_ENV_PROMPT
12:45:03 ++ '[' '!' nondestructive = nondestructive ']'
12:45:03 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
12:45:03 ++ export VIRTUAL_ENV
12:45:03 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:45:03 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:45:03 ++ export PATH
12:45:03 ++ '[' -n '' ']'
12:45:03 ++ '[' -z '' ']'
12:45:03 ++ _OLD_VIRTUAL_PS1=
12:45:03 ++ PS1='(.venv3) '
12:45:03 ++ export PS1
12:45:03 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:45:03 ++ export VIRTUAL_ENV_PROMPT
12:45:03 ++ hash -r
12:45:03 + pip install -U pip
12:45:04 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
12:45:05 Collecting pip
12:45:05 Downloading pip-26.1.2-py3-none-any.whl (1.8 MB)
12:45:05 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 12.5 MB/s eta 0:00:00
12:45:05 Installing collected packages: pip
12:45:05 Attempting uninstall: pip
12:45:05 Found existing installation: pip 22.3.1
12:45:06 Uninstalling pip-22.3.1:
12:45:06 Successfully uninstalled pip-22.3.1
12:45:21 Successfully installed pip-26.1.2
12:45:21 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:45:22 Collecting zeroc-ice==3.6.5
12:45:22 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:45:24 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.6 MB/s 0:00:01
12:45:24 Installing collected packages: zeroc-ice
12:45:27 Successfully installed zeroc-ice-3.6.5
12:45:27 + pip install markdown
12:45:28 Collecting markdown
12:45:28 Downloading markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
12:45:28 Downloading markdown-3.10.2-py3-none-any.whl (108 kB)
12:45:28 Installing collected packages: markdown
12:45:29 Successfully installed markdown-3.10.2
12:45:29 + pip install reportlab
12:45:30 Collecting reportlab
12:45:30 Downloading reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
12:45:31 Collecting pillow>=9.0.0 (from reportlab)
12:45:31 Downloading pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
12:45:31 Collecting charset-normalizer (from reportlab)
12:45:31 Downloading charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
12:45:31 Downloading reportlab-5.0.0-py3-none-any.whl (2.0 MB)
12:45:31 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 11.3 MB/s 0:00:00
12:45:31 Downloading pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
12:45:31 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.9/6.9 MB 18.4 MB/s 0:00:00
12:45:32 Downloading charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
12:45:32 Installing collected packages: pillow, charset-normalizer, reportlab
12:45:40
12:45:40 Successfully installed charset-normalizer-3.4.7 pillow-12.3.0 reportlab-5.0.0
12:45:40 + pip install omego
12:45:41 Collecting omego
12:45:41 Downloading omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
12:45:41 Collecting future (from omego)
12:45:41 Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:45:41 Collecting yaclifw>=0.1.1 (from omego)
12:45:41 Downloading yaclifw-0.2.0.tar.gz (13 kB)
12:45:42 Installing build dependencies: started
12:45:43 Installing build dependencies: finished with status 'done'
12:45:43 Getting requirements to build wheel: started
12:45:43 Getting requirements to build wheel: finished with status 'done'
12:45:43 Preparing metadata (pyproject.toml): started
12:45:44 Preparing metadata (pyproject.toml): finished with status 'done'
12:45:44 Collecting six (from yaclifw>=0.1.1->omego)
12:45:44 Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
12:45:44 Downloading omego-0.8.0-py3-none-any.whl (41 kB)
12:45:44 Downloading future-1.0.0-py3-none-any.whl (491 kB)
12:45:44 Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
12:45:44 Building wheels for collected packages: yaclifw
12:45:44 Building wheel for yaclifw (pyproject.toml): started
12:45:44 Building wheel for yaclifw (pyproject.toml): finished with status 'done'
12:45:44 Created wheel for yaclifw: filename=yaclifw-0.2.0-py3-none-any.whl size=14688 sha256=c8015ad656ac90654cfc6a0ba626f1dffaf9c41d1c12a2bb5baa6c26809feb5e
12:45:44 Stored in directory: /home/omero/.cache/pip/wheels/65/14/90/3ee93d92964646dc1f6990630191b41765be2582811bce72ac
12:45:44 Successfully built yaclifw
12:45:44 Installing collected packages: six, future, yaclifw, omego
12:45:50
12:45:50 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
12:45:50 + pip install tables
12:45:51 Collecting tables
12:45:51 Downloading tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
12:45:51 Collecting numpy>=1.20.0 (from tables)
12:45:51 Downloading numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
12:45:51 Collecting numexpr>=2.6.2 (from tables)
12:45:51 Downloading numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
12:45:51 Collecting packaging (from tables)
12:45:51 Downloading packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
12:45:52 Collecting py-cpuinfo (from tables)
12:45:52 Downloading py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
12:45:52 Collecting blosc2>=2.3.0 (from tables)
12:45:52 Downloading blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.8 kB)
12:45:52 Collecting ndindex (from blosc2>=2.3.0->tables)
12:45:52 Downloading ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
12:45:52 Collecting msgpack (from blosc2>=2.3.0->tables)
12:45:52 Downloading msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
12:45:52 Collecting pydantic (from blosc2>=2.3.0->tables)
12:45:52 Downloading pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
12:45:52 Collecting requests (from blosc2>=2.3.0->tables)
12:45:52 Downloading requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
12:45:53 Collecting rich (from blosc2>=2.3.0->tables)
12:45:53 Downloading rich-15.0.0-py3-none-any.whl.metadata (18 kB)
12:45:53 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
12:45:53 Downloading threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
12:45:53 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
12:45:53 Downloading annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB)
12:45:54 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
12:45:54 Downloading pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
12:45:54 Collecting typing-extensions>=4.14.1 (from pydantic->blosc2>=2.3.0->tables)
12:45:54 Downloading typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
12:45:54 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
12:45:54 Downloading typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB)
12:45:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7)
12:45:54 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
12:45:54 Downloading idna-3.18-py3-none-any.whl.metadata (6.1 kB)
12:45:54 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
12:45:54 Downloading urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
12:45:54 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
12:45:54 Downloading certifi-2026.6.17-py3-none-any.whl.metadata (2.5 kB)
12:45:54 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
12:45:54 Downloading markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
12:45:55 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
12:45:55 Downloading pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
12:45:55 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
12:45:55 Downloading mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
12:45:55 Downloading tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
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12:45:55 Downloading blosc2-4.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (6.8 MB)
12:45:56 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.8/6.8 MB 16.1 MB/s 0:00:00
12:45:56 Downloading numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
12:45:56 Downloading numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
12:45:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 18.7 MB/s 0:00:00
12:45:57 Downloading msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
12:45:57 Downloading ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
12:45:57 Downloading packaging-26.2-py3-none-any.whl (100 kB)
12:45:57 Downloading py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
12:45:57 Downloading pydantic-2.13.4-py3-none-any.whl (472 kB)
12:45:57 Downloading pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
12:45:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 15.3 MB/s 0:00:00
12:45:57 Downloading annotated_types-0.7.0-py3-none-any.whl (13 kB)
12:45:57 Downloading typing_extensions-4.16.0-py3-none-any.whl (45 kB)
12:45:57 Downloading typing_inspection-0.4.2-py3-none-any.whl (14 kB)
12:45:57 Downloading requests-2.34.2-py3-none-any.whl (73 kB)
12:45:57 Downloading idna-3.18-py3-none-any.whl (65 kB)
12:45:57 Downloading urllib3-2.7.0-py3-none-any.whl (131 kB)
12:45:57 Downloading certifi-2026.6.17-py3-none-any.whl (133 kB)
12:45:57 Downloading rich-15.0.0-py3-none-any.whl (310 kB)
12:45:57 Downloading pygments-2.20.0-py3-none-any.whl (1.2 MB)
12:45:58 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 12.2 MB/s 0:00:00
12:45:58 Downloading markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
12:45:58 Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB)
12:45:58 Downloading threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
12:45:58 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, certifi, annotated-types, typing-inspection, requests, pydantic-core, numexpr, markdown-it-py, rich, pydantic, blosc2, tables
12:46:44
12:46:44 Successfully installed annotated-types-0.7.0 blosc2-4.7.0 certifi-2026.6.17 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 requests-2.34.2 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-extensions-4.16.0 typing-inspection-0.4.2 urllib3-2.7.0
12:46:44 + pip install jinja2
12:46:45 Collecting jinja2
12:46:45 Downloading jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
12:46:46 Collecting MarkupSafe>=2.0 (from jinja2)
12:46:46 Downloading markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
12:46:46 Downloading jinja2-3.1.6-py3-none-any.whl (134 kB)
12:46:46 Downloading markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
12:46:46 Installing collected packages: MarkupSafe, jinja2
12:46:47
12:46:47 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
12:46:47 + pip install omero-py
12:46:48 Collecting omero-py
12:46:48 Downloading omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
12:46:48 Collecting appdirs (from omero-py)
12:46:48 Downloading appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
12:46:48 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
12:46:48 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
12:46:48 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
12:46:48 Collecting PyYAML (from omero-py)
12:46:48 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:46:48 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:46:48 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.34.2)
12:46:48 Collecting portalocker (from omero-py)
12:46:48 Downloading portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
12:46:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7)
12:46:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
12:46:49 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.7.0)
12:46:49 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.6.17)
12:46:49 Downloading omero_py-5.22.1-py3-none-any.whl (2.8 MB)
12:46:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 15.1 MB/s 0:00:00
12:46:49 Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:46:49 Downloading portalocker-3.2.0-py3-none-any.whl (22 kB)
12:46:49 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:46:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 806.6/806.6 kB 7.1 MB/s 0:00:00
12:46:49 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
12:47:07
12:47:07 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0
12:47:07 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
12:47:08 Collecting omero-metadata
12:47:08 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-77c2ql4n/omero-metadata_547a5bd7b612473aa03f95677200d43a
12:47:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-77c2ql4n/omero-metadata_547a5bd7b612473aa03f95677200d43a
12:47:09 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 9588d7e4152c26ee74bcd4ccb828a95185c32a7b
12:47:09 Installing build dependencies: started
12:47:10 Installing build dependencies: finished with status 'done'
12:47:10 Getting requirements to build wheel: started
12:47:10 Getting requirements to build wheel: finished with status 'done'
12:47:10 Preparing metadata (pyproject.toml): started
12:47:11 Preparing metadata (pyproject.toml): finished with status 'done'
12:47:11 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
12:47:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
12:47:11 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
12:47:11 Collecting pandas (from omero-metadata)
12:47:11 Downloading pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
12:47:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
12:47:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
12:47:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6)
12:47:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
12:47:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
12:47:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
12:47:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
12:47:11 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
12:47:11 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
12:47:11 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
12:47:11 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
12:47:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7)
12:47:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
12:47:11 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
12:47:11 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.6.17)
12:47:11 Downloading pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
12:47:12 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.3/11.3 MB 18.5 MB/s 0:00:00
12:47:12 Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
12:47:12 Building wheels for collected packages: omero-metadata
12:47:12 Building wheel for omero-metadata (pyproject.toml): started
12:47:12 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
12:47:12 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=baab83007ab210bc38a1861fef30fa42ca64cd3ce6d510f585c6d2de8a0a50ca
12:47:12 Stored in directory: /tmp/pip-ephem-wheel-cache-y_6lyyam/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
12:47:12 Successfully built omero-metadata
12:47:12 Installing collected packages: python-dateutil, pandas, omero-metadata
12:47:53
12:47:53 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.3 python-dateutil-2.9.0.post0
12:47:53 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
12:47:54 Collecting omero-cli-render
12:47:54 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-rpsdnfu1/omero-cli-render_10da046caa744f638143c289df722900
12:47:54 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-rpsdnfu1/omero-cli-render_10da046caa744f638143c289df722900
12:47:55 Running command git checkout -b merge_ci --track origin/merge_ci
12:47:56 Switched to a new branch 'merge_ci'
12:47:56 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:47:56 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 23d2d55d97ce42d2a31619c0a0b97e80d9109070
12:47:56 Installing build dependencies: started
12:47:57 Installing build dependencies: finished with status 'done'
12:47:57 Getting requirements to build wheel: started
12:47:57 Getting requirements to build wheel: finished with status 'done'
12:47:57 Preparing metadata (pyproject.toml): started
12:47:57 Preparing metadata (pyproject.toml): finished with status 'done'
12:47:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
12:47:57 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
12:47:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
12:47:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
12:47:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
12:47:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
12:47:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
12:47:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
12:47:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
12:47:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7)
12:47:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
12:47:58 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
12:47:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.6.17)
12:47:58 Building wheels for collected packages: omero-cli-render
12:47:58 Building wheel for omero-cli-render (pyproject.toml): started
12:47:58 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
12:47:58 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=17f6c7e71041b5e510646eb3112f577efe7b98edaab5d9a8a3351529949fccb6
12:47:58 Stored in directory: /tmp/pip-ephem-wheel-cache-76z1ojl1/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
12:47:58 Successfully built omero-cli-render
12:47:58 Installing collected packages: omero-cli-render
12:47:58 Successfully installed omero-cli-render-0.8.2.dev0
12:47:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
12:47:59 Collecting omero-cli-duplicate
12:47:59 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-x199f3og/omero-cli-duplicate_cf7ef01c36f3480791bdf811db4bff69
12:47:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-x199f3og/omero-cli-duplicate_cf7ef01c36f3480791bdf811db4bff69
12:48:00 Running command git checkout -b merge_ci --track origin/merge_ci
12:48:00 Switched to a new branch 'merge_ci'
12:48:00 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:48:00 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 42072ce7ddf58526c26735240d703594c4271806
12:48:00 Installing build dependencies: started
12:48:01 Installing build dependencies: finished with status 'done'
12:48:01 Getting requirements to build wheel: started
12:48:02 Getting requirements to build wheel: finished with status 'done'
12:48:02 Preparing metadata (pyproject.toml): started
12:48:02 Preparing metadata (pyproject.toml): finished with status 'done'
12:48:02 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
12:48:02 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
12:48:02 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
12:48:02 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
12:48:02 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
12:48:02 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
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12:48:02 Building wheels for collected packages: omero-cli-duplicate
12:48:02 Building wheel for omero-cli-duplicate (pyproject.toml): started
12:48:02 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
12:48:02 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=395bf35c17fbd92f9dcd645cb7003eea1f806e648611bff6047a85057311f220
12:48:02 Stored in directory: /tmp/pip-ephem-wheel-cache-q50tfwpz/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
12:48:02 Successfully built omero-cli-duplicate
12:48:02 Installing collected packages: omero-cli-duplicate
12:48:03 Successfully installed omero-cli-duplicate-0.4.1.dev0
12:48:03 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
12:48:03 Collecting omero-cli-zarr
12:48:03 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-3ft_8ej7/omero-cli-zarr_95297531cd0948259c8786eddb530755
12:48:03 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-3ft_8ej7/omero-cli-zarr_95297531cd0948259c8786eddb530755
12:48:04 Running command git checkout -b merge_ci --track origin/merge_ci
12:48:05 Switched to a new branch 'merge_ci'
12:48:05 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:48:05 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 018fb77e1d941a36c7acb85898c6ba659530e36e
12:48:05 Installing build dependencies: started
12:48:06 Installing build dependencies: finished with status 'done'
12:48:06 Getting requirements to build wheel: started
12:48:06 Getting requirements to build wheel: finished with status 'done'
12:48:06 Installing backend dependencies: started
12:48:08 Installing backend dependencies: finished with status 'done'
12:48:08 Preparing metadata (pyproject.toml): started
12:48:08 Preparing metadata (pyproject.toml): finished with status 'done'
12:48:08 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
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12:48:09 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:10 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
12:48:10 Downloading toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
12:48:10 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:10 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
12:48:10 Downloading ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
12:48:10 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
12:48:10 Downloading deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
12:48:11 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:11 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:11 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:11 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:11 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:11 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:12 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:16 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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12:48:26 Downloading jmespath-1.1.0-py3-none-any.whl (20 kB)
12:48:26 Downloading multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
12:48:26 Downloading wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (159 kB)
12:48:26 Downloading yarl-1.24.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (106 kB)
12:48:26 Downloading aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
12:48:26 Downloading aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
12:48:26 Downloading attrs-26.1.0-py3-none-any.whl (67 kB)
12:48:26 Downloading frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
12:48:26 Downloading propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
12:48:26 Downloading scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
12:48:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.7/13.7 MB 19.0 MB/s 0:00:00
12:48:27 Downloading imageio-2.37.3-py3-none-any.whl (317 kB)
12:48:27 Downloading lazy_loader-0.5-py3-none-any.whl (8.0 kB)
12:48:27 Downloading networkx-3.6.1-py3-none-any.whl (2.1 MB)
12:48:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 7.9 MB/s 0:00:00
12:48:28 Downloading scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
12:48:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 35.3/35.3 MB 14.0 MB/s 0:00:02
12:48:30 Downloading tifffile-2026.3.3-py3-none-any.whl (243 kB)
12:48:30 Downloading toolz-1.1.0-py3-none-any.whl (58 kB)
12:48:30 Downloading zarr-3.1.6-py3-none-any.whl (295 kB)
12:48:30 Downloading donfig-0.8.1.post1-py3-none-any.whl (21 kB)
12:48:30 Downloading google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
12:48:30 Downloading numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
12:48:31 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.1/9.1 MB 18.8 MB/s 0:00:00
12:48:31 Downloading zipp-4.1.0-py3-none-any.whl (10 kB)
12:48:31 Downloading deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
12:48:31 Downloading locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
12:48:31 Downloading rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
12:48:31 Building wheels for collected packages: omero-cli-zarr
12:48:31 Building wheel for omero-cli-zarr (pyproject.toml): started
12:48:32 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
12:48:32 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g018fb77-py3-none-any.whl size=38290 sha256=b416839a7c33896370bcfef6acb4570e8ce6b2ad59710bbba02dbeace54ed0c7
12:48:32 Stored in directory: /tmp/pip-ephem-wheel-cache-tdjhjju3/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
12:48:32 Successfully built omero-cli-zarr
12:48:32 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
12:49:08 Attempting uninstall: pydantic-core
12:49:08 Found existing installation: pydantic_core 2.46.4
12:49:08 Uninstalling pydantic_core-2.46.4:
12:49:08 Successfully uninstalled pydantic_core-2.46.4
12:49:53 Attempting uninstall: pydantic
12:49:53 Found existing installation: pydantic 2.13.4
12:49:53 Uninstalling pydantic-2.13.4:
12:49:53 Successfully uninstalled pydantic-2.13.4
12:50:36
12:50:36 Successfully installed Deprecated-1.3.1 aiobotocore-3.7.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.1 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.0 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.6.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev162+g018fb77 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.6.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.2.2 yarl-1.24.2 zarr-3.1.6 zipp-4.1.0
12:50:36 + pip install omero-certificates
12:50:38 Collecting omero-certificates
12:50:38 Downloading omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
12:50:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
12:50:38 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
12:50:38 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
12:50:38 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
12:50:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
12:50:38 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
12:50:38 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
12:50:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
12:50:38 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
12:50:38 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.7)
12:50:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
12:50:38 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
12:50:38 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.6.17)
12:50:38 Downloading omero_certificates-0.4.0-py3-none-any.whl (11 kB)
12:50:38 Installing collected packages: omero-certificates
12:50:39 Successfully installed omero-certificates-0.4.0
12:50:39 + for x in *.tar.gz
12:50:39 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
12:50:39 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
12:50:39 Installing build dependencies: started
12:50:41 Installing build dependencies: finished with status 'done'
12:50:41 Getting requirements to build wheel: started
12:50:41 Getting requirements to build wheel: finished with status 'done'
12:50:41 Preparing metadata (pyproject.toml): started
12:50:41 Preparing metadata (pyproject.toml): finished with status 'done'
12:50:41 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
12:50:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
12:50:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
12:50:41 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
12:50:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
12:50:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
12:50:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
12:50:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
12:50:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
12:50:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.7)
12:50:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
12:50:41 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
12:50:41 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
12:50:41 Building wheels for collected packages: omero-dropbox
12:50:41 Building wheel for omero-dropbox (pyproject.toml): started
12:50:42 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
12:50:42 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=4cc334235b9cef3f6b1656915d5d92825001a3751cd13af9c009b58be2f47acb
12:50:42 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
12:50:42 Successfully built omero-dropbox
12:50:42 Installing collected packages: omero-dropbox
12:50:43 Successfully installed omero-dropbox-5.7.1.dev0
12:50:43 + for x in *.tar.gz
12:50:43 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
12:50:43 Processing ./omero_marshal-0.9.2.dev0.tar.gz
12:50:44 Installing build dependencies: started
12:50:45 Installing build dependencies: finished with status 'done'
12:50:45 Getting requirements to build wheel: started
12:50:45 Getting requirements to build wheel: finished with status 'done'
12:50:45 Preparing metadata (pyproject.toml): started
12:50:46 Preparing metadata (pyproject.toml): finished with status 'done'
12:50:46 Building wheels for collected packages: omero_marshal
12:50:46 Building wheel for omero_marshal (pyproject.toml): started
12:50:46 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
12:50:46 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=9b1b47f22ef7736ce987e204f64ea7ca883d0f4261a36b3f23b470bef28238f5
12:50:46 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
12:50:46 Successfully built omero_marshal
12:50:46 Installing collected packages: omero_marshal
12:50:49 Successfully installed omero_marshal-0.9.2.dev0
12:50:49 + for x in *.tar.gz
12:50:49 + pip install -U omero_py-5.22.2.dev0.tar.gz
12:50:50 Processing ./omero_py-5.22.2.dev0.tar.gz
12:50:50 Installing build dependencies: started
12:50:51 Installing build dependencies: finished with status 'done'
12:50:51 Getting requirements to build wheel: started
12:50:52 Getting requirements to build wheel: finished with status 'done'
12:50:52 Preparing metadata (pyproject.toml): started
12:50:52 Preparing metadata (pyproject.toml): finished with status 'done'
12:50:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
12:50:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
12:50:52 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6)
12:50:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0)
12:50:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
12:50:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
12:50:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2)
12:50:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
12:50:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.7)
12:50:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18)
12:50:52 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0)
12:50:52 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.6.17)
12:50:52 Building wheels for collected packages: omero-py
12:50:52 Building wheel for omero-py (pyproject.toml): started
12:50:53 Building wheel for omero-py (pyproject.toml): finished with status 'done'
12:50:53 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=7a13a4ebbce06ec6cc2a864aa685a327ba8750a8f25829a3e7b3e392a49e2015
12:50:53 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
12:50:53 Successfully built omero-py
12:50:53 Installing collected packages: omero-py
12:50:53 Attempting uninstall: omero-py
12:50:53 Found existing installation: omero-py 5.22.1
12:50:54 Uninstalling omero-py-5.22.1:
12:51:06 Successfully uninstalled omero-py-5.22.1
12:51:22 Successfully installed omero-py-5.22.2.dev0
12:51:23 + for x in *.tar.gz
12:51:23 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
12:51:23 Processing ./omero_scripts-5.10.1.dev0.tar.gz
12:51:23 Installing build dependencies: started
12:51:25 Installing build dependencies: finished with status 'done'
12:51:25 Getting requirements to build wheel: started
12:51:25 Getting requirements to build wheel: finished with status 'done'
12:51:25 Preparing metadata (pyproject.toml): started
12:51:26 Preparing metadata (pyproject.toml): finished with status 'done'
12:51:26 Building wheels for collected packages: omero-scripts
12:51:26 Building wheel for omero-scripts (pyproject.toml): started
12:51:26 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
12:51:26 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=136999 sha256=8e0fca17d0f5f5d227097deac247f107deed70c62ce2903b91c4d04021dea240
12:51:26 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
12:51:26 Successfully built omero-scripts
12:51:26 Installing collected packages: omero-scripts
12:51:27 Successfully installed omero-scripts-5.10.1.dev0
12:51:27 + for x in *.tar.gz
12:51:27 + pip install -U omero_web-5.32.1.dev0.tar.gz
12:51:28 Processing ./omero_web-5.32.1.dev0.tar.gz
12:51:28 Installing build dependencies: started
12:51:30 Installing build dependencies: finished with status 'done'
12:51:30 Getting requirements to build wheel: started
12:51:30 Getting requirements to build wheel: finished with status 'done'
12:51:30 Preparing metadata (pyproject.toml): started
12:51:30 Preparing metadata (pyproject.toml): finished with status 'done'
12:51:30 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0)
12:51:30 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
12:51:30 Downloading concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
12:51:31 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
12:51:31 Downloading django-5.2.15-py3-none-any.whl.metadata (4.1 kB)
12:51:31 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
12:51:31 Downloading django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
12:51:31 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
12:51:31 Downloading django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
12:51:31 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
12:51:31 Downloading whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
12:51:31 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
12:51:31 Downloading gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
12:51:31 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
12:51:31 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
12:51:31 Collecting pytz (from omero-web==5.32.1.dev0)
12:51:31 Downloading pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB)
12:51:31 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
12:51:31 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
12:51:31 Collecting importlib-resources (from omero-web==5.32.1.dev0)
12:51:31 Downloading importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
12:51:31 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
12:51:31 Downloading asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
12:51:32 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
12:51:32 Downloading sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
12:51:32 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
12:51:32 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
12:51:32 Downloading wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
12:51:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
12:51:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
12:51:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
12:51:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
12:51:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
12:51:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
12:51:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.7)
12:51:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
12:51:32 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
12:51:32 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
12:51:32 Downloading django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
12:51:32 Downloading django-5.2.15-py3-none-any.whl (8.3 MB)
12:51:32 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 18.2 MB/s 0:00:00
12:51:32 Downloading asgiref-3.11.1-py3-none-any.whl (24 kB)
12:51:32 Downloading concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
12:51:32 Downloading django_pipeline-4.1.0-py3-none-any.whl (75 kB)
12:51:32 Downloading gunicorn-26.0.0-py3-none-any.whl (212 kB)
12:51:33 Downloading sqlparse-0.5.5-py3-none-any.whl (46 kB)
12:51:33 Downloading whitenoise-6.12.0-py3-none-any.whl (20 kB)
12:51:33 Downloading importlib_resources-7.1.0-py3-none-any.whl (37 kB)
12:51:33 Downloading pytz-2026.2-py2.py3-none-any.whl (510 kB)
12:51:33 Downloading wheel-0.47.0-py3-none-any.whl (32 kB)
12:51:33 Building wheels for collected packages: omero-web
12:51:33 Building wheel for omero-web (pyproject.toml): started
12:51:34 Building wheel for omero-web (pyproject.toml): finished with status 'done'
12:51:34 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=cb15b660f981eaf64a60f1dcac53353e5dc678ed5089da3163627fcfb73d7a01
12:51:34 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
12:51:34 Successfully built omero-web
12:51:34 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
12:52:48
12:52:48 Successfully installed Django-5.2.15 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
12:52:48 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:52:48 --2026-07-07 12:52:48-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
12:52:48 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.109.133, ...
12:52:48 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
12:52:48 HTTP request sent, awaiting response... 200 OK
12:52:48 Length: 139337 (136K) [text/plain]
12:52:48 Saving to: ‘Figure_To_Pdf.py’
12:52:48
12:52:48 0K .......... .......... .......... .......... .......... 36% 4.38M 0s
12:52:48 50K .......... .......... .......... .......... .......... 73% 5.05M 0s
12:52:48 100K .......... .......... .......... ...... 100% 56.6M=0.02s
12:52:48
12:52:48 2026-07-07 12:52:48 (6.20 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
12:52:48
12:52:48 + chmod 755 Figure_To_Pdf.py
12:52:48 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
12:52:48 + omero config set omero.db.name OMERO-server
12:52:56 + omero config set omero.db.host pg
12:53:00 + omero config set omero.db.user postgres
12:53:06 + omero config set omero.data.dir /home/omero/omero-server-data
12:53:12 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
12:53:17 + omero config set omero.db.poolsize 25
12:53:22 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
12:53:28 + omero config set omero.security.trustStorePassword changeit
12:53:33 + omero config set omero.mail.config true
12:53:38 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
12:53:43 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
12:53:49 + omero certificates
12:53:53 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
12:53:53 certificates created: /home/omero/omero-server-data/certs/server.key /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
12:53:54 + '[' true = true ']'
12:53:54 + createdb -h pg -U postgres OMERO-server
12:54:01 + omego db init --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
12:54:01 2026-07-07 12:54:01,722 [omego.extern] INFO Executing : omero version
12:54:06 OMERO.py version:
12:54:06 OMERO.server version:
12:54:06 5.6.3-622-cc67600ce0-ice36-b1
12:54:06 5.22.2.dev0
12:54:06 2026-07-07 12:54:06,913 [omego.extern] INFO Completed [5.191 s]
12:54:06 2026-07-07 12:54:06,913 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
12:54:06 2026-07-07 12:54:06,913 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:54:06 2026-07-07 12:54:06,913 [omego.extern] INFO Executing : omero config get --show-password
12:54:12 2026-07-07 12:54:12,054 [omego.extern] INFO Completed [5.141 s]
12:54:12 2026-07-07 12:54:12,054 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:54:12 2026-07-07 12:54:12,054 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
12:54:12 2026-07-07 12:54:12,060 [omego.extern] INFO Completed [0.006 s]
12:54:12 2026-07-07 12:54:12,060 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
12:54:12
12:54:12 2026-07-07 12:54:12,060 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:54:12 2026-07-07 12:54:12,060 [omego.extern] INFO Executing : omero config get --show-password
12:54:17 2026-07-07 12:54:17,315 [omego.extern] INFO Completed [5.255 s]
12:54:17 2026-07-07 12:54:17,315 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:54:17 2026-07-07 12:54:17,315 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
12:54:17 2026-07-07 12:54:17,367 [omego.extern] INFO Completed [0.051 s]
12:54:17 2026-07-07 12:54:17,367 [ omego.db] INFO Creating SQL: omero-20260707-125417-367098.sql
12:54:17 2026-07-07 12:54:17,367 [omego.extern] INFO Running [current environment]: omero db script -f omero-20260707-125417-367098.sql omero
12:54:17 2026-07-07 12:54:17,367 [omego.extern] INFO Executing : omero db script -f omero-20260707-125417-367098.sql omero
12:54:24 2026-07-07 12:54:24,326 [omego.extern] INFO Completed [6.959 s]
12:54:24 2026-07-07 12:54:24,326 [ omego.db] INFO Creating database using omero-20260707-125417-367098.sql
12:54:24 2026-07-07 12:54:24,326 [omego.extern] INFO Running [current environment]: omero config get --show-password
12:54:24 2026-07-07 12:54:24,326 [omego.extern] INFO Executing : omero config get --show-password
12:54:29 2026-07-07 12:54:29,537 [omego.extern] INFO Completed [5.211 s]
12:54:29 2026-07-07 12:54:29,537 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
12:54:29 2026-07-07 12:54:29,537 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -f omero-20260707-125417-367098.sql
12:54:51 2026-07-07 12:54:51,403 [omego.extern] INFO Completed [21.866 s]
12:54:51 2026-07-07 12:54:51,403 [ omego.db] WARNI stderr: b'psql:omero-20260707-125417-367098.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"\npsql:omero-20260707-125417-367098.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"\npsql:omero-20260707-125417-367098.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"\n'
12:54:51 + export LANG=en_US.UTF-8
12:54:51 + LANG=en_US.UTF-8
12:54:51 + export LANGUAGE=en_US:en
12:54:51 + LANGUAGE=en_US:en
12:54:51 + export LC_ALL=en_US.UTF-8
12:54:51 + LC_ALL=en_US.UTF-8
12:54:51 + BUILD_ID=DONT_KILL_ME
12:54:51 + omero admin start
12:55:02 No descriptor given. Using etc/grid/default.xml
12:55:10 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
12:55:10 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
12:55:10 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
12:55:10 Waiting on startup. Use CTRL-C to exit
12:55:10 .............................
13:00:00 Failed to startup some components after 300 seconds
13:00:00 Calling "stop" on remaining components
13:00:00 Waiting on shutdown. Use CTRL-C to exit
13:00:00 ......Build step 'Execute shell' marked build as failure
13:01:01 Finished: FAILURE
