20:39:12 Started by user devspace
20:39:12 Running as SYSTEM
20:39:12 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
20:39:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11553510750440828832.sh
20:39:12 + source /home/settings.env
20:39:12 ++ OMERO_DB_HOST=pg
20:39:12 ++ OMERO_DB_USER=postgres
20:39:12 ++ OMERO_DB_PASS=
20:39:12 ++ OMERO_ROOT_PASS=omero
20:39:12 ++ OMERO_DATA_DIR=/OMERO
20:39:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
20:39:12 + OMERO_DB_NAME=OMERO-server
20:39:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
20:39:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:39:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:39:12 + OMERO_DATA_DIR=/home/omero/omero-server-data
20:39:12 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
20:39:12 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
20:39:12 ++ deactivate nondestructive
20:39:12 ++ '[' -n '' ']'
20:39:12 ++ '[' -n '' ']'
20:39:12 ++ '[' -n /bin/bash -o -n '' ']'
20:39:12 ++ hash -r
20:39:12 ++ '[' -n '' ']'
20:39:12 ++ unset VIRTUAL_ENV
20:39:12 ++ '[' '!' nondestructive = nondestructive ']'
20:39:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
20:39:12 ++ export VIRTUAL_ENV
20:39:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:39:12 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:39:12 ++ export PATH
20:39:12 ++ '[' -n '' ']'
20:39:12 ++ '[' -z '' ']'
20:39:12 ++ _OLD_VIRTUAL_PS1=
20:39:12 ++ PS1='(.venv3) '
20:39:12 ++ export PS1
20:39:12 ++ '[' -n /bin/bash -o -n '' ']'
20:39:12 ++ hash -r
20:39:12 + omero admin stop
20:39:13 Waiting on shutdown. Use CTRL-C to exit
20:39:13 .+ sleep 5
20:39:28 + deactivate
20:39:28 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
20:39:28 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:39:28 + export PATH
20:39:28 + unset _OLD_VIRTUAL_PATH
20:39:28 + '[' -n '' ']'
20:39:28 + '[' -n /bin/bash -o -n '' ']'
20:39:28 + hash -r
20:39:28 + '[' -n '' ']'
20:39:28 + unset VIRTUAL_ENV
20:39:28 + '[' '!' '' = nondestructive ']'
20:39:28 + unset -f deactivate
20:39:28 + rm -rf /home/omero/workspace/OMERO-server/.venv3
20:39:29 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3
20:39:32 + '[' false = true ']'
20:39:32 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
20:39:32 Skipping PURGE_DATA:CleanDbAndRepo
20:39:32 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.6.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.3.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.25.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
20:39:34 Copied 1 artifact from "OMERO-build" build number 48
20:39:34 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 48
20:39:34 Copied 2 artifacts from "OMERO-build-build" build number 49
20:39:34 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9658753053264284256.sh
20:39:34 + source /home/settings.env
20:39:34 ++ OMERO_DB_HOST=pg
20:39:34 ++ OMERO_DB_USER=postgres
20:39:34 ++ OMERO_DB_PASS=
20:39:34 ++ OMERO_ROOT_PASS=omero
20:39:34 ++ OMERO_DATA_DIR=/OMERO
20:39:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
20:39:34 + OMERO_DB_NAME=OMERO-server
20:39:34 + OMERO_DATA_DIR=/home/omero/omero-server-data
20:39:34 + mkdir -p /home/omero/omero-server-data
20:39:34 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
20:39:34 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:39:34 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:39:34 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
20:39:34 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
20:39:34 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
20:39:34 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
20:39:34 ++ ls OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:39:34 + ZIP=OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:39:34 + '[' '!' -z '' ']'
20:39:34 + DIST=OMERO.server-5.6.3-458-da8aba771d-ice36
20:39:34 + unzip OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:39:34 Archive: OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/grid/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/profiles/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/error/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/janelia/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/ncsa_paledit/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/luts/wcif/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/analysis_scripts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/annotation_scripts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/export_scripts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/figure_scripts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/import_scripts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/scripts/omero/util_scripts/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__1/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__10/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__11/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__2/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__3/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__4/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__5/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__6/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__7/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__8/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__9/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__4/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__5/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__6/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__7/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.1__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__1/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__2/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__3/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/
20:39:34 creating: OMERO.server-5.6.3-458-da8aba771d-ice36/var/
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/LICENSE.txt
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/backup.cfg
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/mail-senders.example
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/blitz/mail-server.example
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/build.properties
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/env.bat
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/env.sh
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/hibernate.properties
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/ice.config
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-cli.xml
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-indexing-cli.xml
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback-indexing.xml
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/logback.xml
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/mime.types
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/node1.cfg
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/node2.cfg
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/omero.properties
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/profiles/psql
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/rollover.cfg
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/Windows.cfg
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/error/maintainance.html
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/README
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/default.xml
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/templates.xml
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/grid/windefault.xml
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/ice.config
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/internal.cfg
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/master.cfg
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/templates/robot.template
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/etc/testdropbox.config
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/history.rst
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/OMEZarrReader.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/activation.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aggdesigner-algorithm.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aircompressor.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/annotations.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/antlr.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aopalliance.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/avatica-core.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/avatica-metrics.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-core.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-kms.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/aws-java-sdk-s3.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/base.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-all.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-anim.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-awt-util.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-bridge.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-codec.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-constants.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-css.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-dom.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-ext.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-extension.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-gui-util.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-gvt.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-i18n.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-parser.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-rasterizer-ext.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-rasterizer.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-script.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-slideshow.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-squiggle-ext.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-squiggle.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svg-dom.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgbrowser.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svggen.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgpp.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-svgrasterizer.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-swing.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-transcoder.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-ttf2svg.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-util.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/batik-xml.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/btm.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/bufr.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/c3p0.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/calcite-core.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/calcite-linq4j.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/cdm-core.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/checker-qual.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-beanutils.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-codec.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-collections.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-collections4.jar
20:39:34 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/client/commons-compiler.jar
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20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/sketches-core.jar
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20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/snakeyaml.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/solr-analysis-extras.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/solr-commons-csv.jar
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20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/specification.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-aop.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-beans.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-context-support.jar
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20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-expression.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-jdbc.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-jms.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-ldap-core.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-messaging.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-orm.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-security-core.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-security-ldap.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/spring-tx.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/sqlite-jdbc.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/subethasmtp.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/turbojpeg.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/udunits.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xalan.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xercesImpl.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xml-apis-ext.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xml-apis.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xmlgraphics-commons.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xmpcore.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/lib/server/xpp3.jar
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/README
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/agpl.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/antlr.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/apache-v1.1.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/apache-v2.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/asm.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/bouncy_castle_license.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/bsd.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/cddl-v1.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/cpl-v10.html
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/crystalclear.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/django.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/dom4j.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/epl-v1.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/fbsd.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/freemarker.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/gpl-v2.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/gpl.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/gtest.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/iconsweets_license.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jamon.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jmock.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jquery.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/jtidy.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-3.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v2.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v2.1.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl-v3.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/lgpl.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/matplotlib.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/mit.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/mpl-v1_0.htm
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/npl-1_1.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/path.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/pil.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/postgresql.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/psf-v2.0.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/psf-v2.5.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/scons.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/slf4j.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/tablelayout.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/which.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/zlib-libpng.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/share/licenses/zpl-v2.1.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/README.txt
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/Makefile
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/current.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/misc/enums.py
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__1/OMERO3__7.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__10/OMERO3A__9.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__11/OMERO3A__10.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__11/OMERO3A__5.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__2/OMERO3A__1.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__3/OMERO3A__2.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__3/OMERO3__5.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__4/OMERO3A__3.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__4/OMERO3__5.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__5/OMERO3A__4.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__6/OMERO3A__5.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__7/OMERO3A__6.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__8/OMERO3A__6.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3A__9/OMERO3A__8.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__4/OMERO3__1.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__5/OMERO3__4.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__6/OMERO3__5.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO3__7/OMERO3__6.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.1__0/OMERO4__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO4__0/OMERO3A__11.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/psql-footer.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/psql-header.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/schema.sql
20:39:36 inflating: OMERO.server-5.6.3-458-da8aba771d-ice36/sql/psql/OMERO5.4__0/views.sql
20:39:36 + rm -f OMERO.server-5.6.3-458-da8aba771d-ice36.zip
20:39:37 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-458-da8aba771d-ice36 /home/omero/workspace/OMERO-server/OMERO.server
20:39:37 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
20:39:37 ++ deactivate nondestructive
20:39:37 ++ '[' -n '' ']'
20:39:37 ++ '[' -n '' ']'
20:39:37 ++ '[' -n /bin/bash -o -n '' ']'
20:39:37 ++ hash -r
20:39:37 ++ '[' -n '' ']'
20:39:37 ++ unset VIRTUAL_ENV
20:39:37 ++ '[' '!' nondestructive = nondestructive ']'
20:39:37 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
20:39:37 ++ export VIRTUAL_ENV
20:39:37 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:39:37 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:39:37 ++ export PATH
20:39:37 ++ '[' -n '' ']'
20:39:37 ++ '[' -z '' ']'
20:39:37 ++ _OLD_VIRTUAL_PS1=
20:39:37 ++ PS1='(.venv3) '
20:39:37 ++ export PS1
20:39:37 ++ '[' -n /bin/bash -o -n '' ']'
20:39:37 ++ hash -r
20:39:37 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl
20:39:37 Collecting zeroc-ice==3.6.5
20:39:38 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB)
20:39:39 Installing collected packages: zeroc-ice
20:39:40 Successfully installed zeroc-ice-3.6.5
20:39:40 + pip install -U pip future
20:39:40 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3)
20:39:41 Collecting pip
20:39:41 Using cached pip-24.0-py3-none-any.whl (2.1 MB)
20:39:41 Collecting future
20:39:41 Using cached future-1.0.0-py3-none-any.whl (491 kB)
20:39:41 Installing collected packages: pip, future
20:39:41 Attempting uninstall: pip
20:39:41 Found existing installation: pip 21.2.3
20:39:41 Uninstalling pip-21.2.3:
20:39:41 Successfully uninstalled pip-21.2.3
20:39:43 Successfully installed future-1.0.0 pip-24.0
20:39:43 + pip install markdown
20:39:44 Collecting markdown
20:39:44 Using cached Markdown-3.6-py3-none-any.whl.metadata (7.0 kB)
20:39:44 Collecting importlib-metadata>=4.4 (from markdown)
20:39:44 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB)
20:39:44 Collecting zipp>=0.5 (from importlib-metadata>=4.4->markdown)
20:39:44 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB)
20:39:44 Using cached Markdown-3.6-py3-none-any.whl (105 kB)
20:39:44 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB)
20:39:44 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB)
20:39:44 Installing collected packages: zipp, importlib-metadata, markdown
20:39:44 Successfully installed importlib-metadata-7.1.0 markdown-3.6 zipp-3.18.1
20:39:44 + pip install reportlab
20:39:45 Collecting reportlab
20:39:45 Using cached reportlab-4.2.0-py3-none-any.whl.metadata (1.4 kB)
20:39:45 Collecting pillow>=9.0.0 (from reportlab)
20:39:45 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
20:39:45 Collecting chardet (from reportlab)
20:39:45 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB)
20:39:45 Using cached reportlab-4.2.0-py3-none-any.whl (1.9 MB)
20:39:45 Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
20:39:45 Using cached chardet-5.2.0-py3-none-any.whl (199 kB)
20:39:45 Installing collected packages: pillow, chardet, reportlab
20:39:46 Successfully installed chardet-5.2.0 pillow-10.3.0 reportlab-4.2.0
20:39:46 + pip install omego
20:39:47 Collecting omego
20:39:47 Using cached omego-0.7.0-py3-none-any.whl
20:39:47 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0)
20:39:47 Collecting yaclifw>=0.1.1 (from omego)
20:39:47 Using cached yaclifw-0.2.0-py3-none-any.whl
20:39:47 Collecting six (from yaclifw>=0.1.1->omego)
20:39:47 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
20:39:47 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
20:39:47 Installing collected packages: six, yaclifw, omego
20:39:47 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0
20:39:47 + pip install tables
20:39:48 Collecting tables
20:39:48 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB)
20:39:48 Collecting numpy>=1.19.0 (from tables)
20:39:48 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
20:39:48 Collecting numexpr>=2.6.2 (from tables)
20:39:48 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.9 kB)
20:39:48 Collecting packaging (from tables)
20:39:48 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
20:39:48 Collecting py-cpuinfo (from tables)
20:39:48 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
20:39:48 Collecting blosc2>=2.3.0 (from tables)
20:39:48 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB)
20:39:48 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables)
20:39:48 Using cached ndindex-1.8-py3-none-any.whl.metadata (3.4 kB)
20:39:48 Collecting msgpack (from blosc2>=2.3.0->tables)
20:39:48 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.1 kB)
20:39:48 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
20:39:48 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
20:39:48 Using cached numexpr-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (375 kB)
20:39:48 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
20:39:48 Using cached packaging-24.0-py3-none-any.whl (53 kB)
20:39:48 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
20:39:48 Using cached ndindex-1.8-py3-none-any.whl (91 kB)
20:39:48 Using cached msgpack-1.0.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (385 kB)
20:39:49 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables
20:39:52 Successfully installed blosc2-2.5.1 msgpack-1.0.8 ndindex-1.8 numexpr-2.10.0 numpy-1.26.4 packaging-24.0 py-cpuinfo-9.0.0 tables-3.9.2
20:39:52 + pip install jinja2
20:39:52 Collecting jinja2
20:39:52 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
20:39:52 Collecting MarkupSafe>=2.0 (from jinja2)
20:39:52 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
20:39:52 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
20:39:52 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
20:39:52 Installing collected packages: MarkupSafe, jinja2
20:39:53 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.3
20:39:53 + pip install omero-py
20:39:53 Collecting omero-py
20:39:53 Using cached omero_py-5.19.2-py3-none-any.whl.metadata (6.6 kB)
20:39:53 Collecting urllib3<2 (from omero-py)
20:39:53 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB)
20:39:53 Collecting appdirs (from omero-py)
20:39:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
20:39:53 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0)
20:39:53 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.26.4)
20:39:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.3.0)
20:39:53 Collecting PyYAML (from omero-py)
20:39:53 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
20:39:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5)
20:39:53 Collecting requests (from omero-py)
20:39:53 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
20:39:53 Collecting portalocker (from omero-py)
20:39:53 Using cached portalocker-2.8.2-py3-none-any.whl.metadata (8.5 kB)
20:39:54 Collecting charset-normalizer<4,>=2 (from requests->omero-py)
20:39:54 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
20:39:54 Collecting idna<4,>=2.5 (from requests->omero-py)
20:39:54 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
20:39:54 Collecting certifi>=2017.4.17 (from requests->omero-py)
20:39:54 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
20:39:54 Using cached omero_py-5.19.2-py3-none-any.whl (2.8 MB)
20:39:54 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB)
20:39:54 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
20:39:54 Using cached portalocker-2.8.2-py3-none-any.whl (17 kB)
20:39:54 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
20:39:54 Using cached requests-2.31.0-py3-none-any.whl (62 kB)
20:39:54 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB)
20:39:54 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
20:39:54 Using cached idna-3.7-py3-none-any.whl (66 kB)
20:39:54 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, idna, charset-normalizer, certifi, requests, omero-py
20:39:56 Successfully installed PyYAML-6.0.1 appdirs-1.4.4 certifi-2024.2.2 charset-normalizer-3.3.2 idna-3.7 omero-py-5.19.2 portalocker-2.8.2 requests-2.31.0 urllib3-1.26.18
20:39:56 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
20:39:56 Collecting omero-metadata
20:39:56 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-36v7ggmy/omero-metadata_58bc981d26e448a7b02e976adbdfddbb
20:39:56 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-36v7ggmy/omero-metadata_58bc981d26e448a7b02e976adbdfddbb
20:39:57 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit dac98655f76cdf25be7dc6319cc675b90ef5b1a1
20:39:57 Installing build dependencies: started
20:39:59 Installing build dependencies: finished with status 'done'
20:39:59 Getting requirements to build wheel: started
20:39:59 Getting requirements to build wheel: finished with status 'done'
20:39:59 Installing backend dependencies: started
20:40:00 Installing backend dependencies: finished with status 'done'
20:40:00 Preparing metadata (pyproject.toml): started
20:40:00 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:00 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.2)
20:40:00 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.1)
20:40:00 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.3)
20:40:00 Collecting pandas (from omero-metadata)
20:40:00 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
20:40:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.18)
20:40:00 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
20:40:00 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
20:40:00 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4)
20:40:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.3.0)
20:40:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
20:40:00 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.31.0)
20:40:00 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.8.2)
20:40:00 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5)
20:40:01 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
20:40:01 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
20:40:01 Collecting pytz>=2020.1 (from pandas->omero-metadata)
20:40:01 Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
20:40:01 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
20:40:01 Using cached tzdata-2024.1-py2.py3-none-any.whl.metadata (1.4 kB)
20:40:01 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0)
20:40:01 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2)
20:40:01 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.7)
20:40:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.2.2)
20:40:01 Using cached pandas-2.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)
20:40:01 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
20:40:01 Using cached pytz-2024.1-py2.py3-none-any.whl (505 kB)
20:40:01 Using cached tzdata-2024.1-py2.py3-none-any.whl (345 kB)
20:40:01 Building wheels for collected packages: omero-metadata
20:40:01 Building wheel for omero-metadata (pyproject.toml): started
20:40:02 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
20:40:02 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39111 sha256=cbddbfd4dcc9e50fb90a13c8b577de4e3e0fba7288252640e4959d382918dd5e
20:40:02 Stored in directory: /tmp/pip-ephem-wheel-cache-qifm717m/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d
20:40:02 Successfully built omero-metadata
20:40:02 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
20:40:08 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.2 python-dateutil-2.9.0.post0 pytz-2024.1 tzdata-2024.1
20:40:08 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
20:40:08 Collecting omero-cli-render
20:40:08 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-vzzyfkc7/omero-cli-render_2139192d710745718499026e006d3f32
20:40:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-vzzyfkc7/omero-cli-render_2139192d710745718499026e006d3f32
20:40:10 Running command git checkout -b merge_ci --track origin/merge_ci
20:40:10 Switched to a new branch 'merge_ci'
20:40:10 branch 'merge_ci' set up to track 'origin/merge_ci'.
20:40:10 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 65fb948a5d5013aafdf54e9f53561dda61855e8b
20:40:10 Installing build dependencies: started
20:40:12 Installing build dependencies: finished with status 'done'
20:40:12 Getting requirements to build wheel: started
20:40:12 Getting requirements to build wheel: finished with status 'done'
20:40:12 Installing backend dependencies: started
20:40:13 Installing backend dependencies: finished with status 'done'
20:40:13 Preparing metadata (pyproject.toml): started
20:40:13 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:13 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.1)
20:40:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.2)
20:40:13 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (1.0.0)
20:40:13 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.18)
20:40:13 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
20:40:13 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4)
20:40:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.3.0)
20:40:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
20:40:13 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.31.0)
20:40:13 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.8.2)
20:40:13 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2)
20:40:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.7)
20:40:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.2.2)
20:40:13 Building wheels for collected packages: omero-cli-render
20:40:13 Building wheel for omero-cli-render (pyproject.toml): started
20:40:13 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
20:40:13 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.1.dev0-py3-none-any.whl size=18018 sha256=ed90cc95a91c69f5f45845d75532baac5a571a877669fe05a012a59b6679a50f
20:40:13 Stored in directory: /tmp/pip-ephem-wheel-cache-74xk86d5/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994
20:40:13 Successfully built omero-cli-render
20:40:14 Installing collected packages: omero-cli-render
20:40:14 Successfully installed omero-cli-render-0.8.1.dev0
20:40:14 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
20:40:14 Collecting omero-cli-duplicate
20:40:14 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-1l8zhlm9/omero-cli-duplicate_9ec8a9f16aac4889bab9db0d1f8ce5f7
20:40:14 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-1l8zhlm9/omero-cli-duplicate_9ec8a9f16aac4889bab9db0d1f8ce5f7
20:40:15 Running command git checkout -b merge_ci --track origin/merge_ci
20:40:15 Switched to a new branch 'merge_ci'
20:40:15 branch 'merge_ci' set up to track 'origin/merge_ci'.
20:40:15 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 48685a845b3a0e5d45076fad08a70428788f6337
20:40:15 Installing build dependencies: started
20:40:17 Installing build dependencies: finished with status 'done'
20:40:17 Getting requirements to build wheel: started
20:40:17 Getting requirements to build wheel: finished with status 'done'
20:40:17 Installing backend dependencies: started
20:40:18 Installing backend dependencies: finished with status 'done'
20:40:18 Preparing metadata (pyproject.toml): started
20:40:18 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:18 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.2)
20:40:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.18)
20:40:18 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
20:40:18 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
20:40:18 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
20:40:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.3.0)
20:40:18 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.1)
20:40:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
20:40:18 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.31.0)
20:40:18 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.8.2)
20:40:18 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2)
20:40:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.7)
20:40:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.2.2)
20:40:18 Building wheels for collected packages: omero-cli-duplicate
20:40:18 Building wheel for omero-cli-duplicate (pyproject.toml): started
20:40:19 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
20:40:19 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11443 sha256=c17b3f232621978e60e3e8b981540424ba54f22155668305601aef53997621c7
20:40:19 Stored in directory: /tmp/pip-ephem-wheel-cache-pfmuu_2q/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84
20:40:19 Successfully built omero-cli-duplicate
20:40:19 Installing collected packages: omero-cli-duplicate
20:40:19 Successfully installed omero-cli-duplicate-0.4.1.dev0
20:40:19 + pip install omero-certificates
20:40:19 Collecting omero-certificates
20:40:19 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB)
20:40:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.2)
20:40:19 Collecting distro==1.8.0 (from omero-certificates)
20:40:19 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB)
20:40:19 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.18)
20:40:19 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
20:40:19 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
20:40:19 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
20:40:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.3.0)
20:40:19 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.1)
20:40:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
20:40:19 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.31.0)
20:40:19 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.8.2)
20:40:19 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2)
20:40:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.7)
20:40:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.2.2)
20:40:19 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB)
20:40:19 Using cached distro-1.8.0-py3-none-any.whl (20 kB)
20:40:20 Installing collected packages: distro, omero-certificates
20:40:20 Successfully installed distro-1.8.0 omero-certificates-0.3.2
20:40:20 + for x in *.tar.gz
20:40:20 + pip install -U omero_dropbox-5.6.3.dev0.tar.gz
20:40:20 Processing ./omero_dropbox-5.6.3.dev0.tar.gz
20:40:20 Installing build dependencies: started
20:40:22 Installing build dependencies: finished with status 'done'
20:40:22 Getting requirements to build wheel: started
20:40:22 Getting requirements to build wheel: finished with status 'done'
20:40:22 Installing backend dependencies: started
20:40:23 Installing backend dependencies: finished with status 'done'
20:40:23 Preparing metadata (pyproject.toml): started
20:40:23 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:23 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.6.3.dev0) (5.19.2)
20:40:23 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.18)
20:40:23 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.4.4)
20:40:23 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.0.0)
20:40:23 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (1.26.4)
20:40:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (10.3.0)
20:40:23 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (6.0.1)
20:40:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (3.6.5)
20:40:23 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.31.0)
20:40:23 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.6.3.dev0) (2.8.2)
20:40:23 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.3.2)
20:40:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (3.7)
20:40:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.6.3.dev0) (2024.2.2)
20:40:23 Building wheels for collected packages: omero-dropbox
20:40:23 Building wheel for omero-dropbox (pyproject.toml): started
20:40:23 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
20:40:23 Created wheel for omero-dropbox: filename=omero_dropbox-5.6.3.dev0-py3-none-any.whl size=49057 sha256=952332cd58d23bfac5fc1fd151c4cf0eecd277accf182c937faba1b974674003
20:40:23 Stored in directory: /home/omero/.cache/pip/wheels/f4/cc/2d/e8cb90723edb0dd09a23d7e300334e5aa51dc6579befeaf8c6
20:40:23 Successfully built omero-dropbox
20:40:24 Installing collected packages: omero-dropbox
20:40:24 Successfully installed omero-dropbox-5.6.3.dev0
20:40:24 + for x in *.tar.gz
20:40:24 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
20:40:24 Processing ./omero_marshal-0.9.1.dev0.tar.gz
20:40:24 Installing build dependencies: started
20:40:26 Installing build dependencies: finished with status 'done'
20:40:26 Getting requirements to build wheel: started
20:40:26 Getting requirements to build wheel: finished with status 'done'
20:40:26 Installing backend dependencies: started
20:40:27 Installing backend dependencies: finished with status 'done'
20:40:27 Preparing metadata (pyproject.toml): started
20:40:27 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:27 Building wheels for collected packages: omero_marshal
20:40:27 Building wheel for omero_marshal (pyproject.toml): started
20:40:27 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
20:40:27 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88031 sha256=ca89fd3e03665a47962f127850f2286e8c8f47a451393055d9c0412a2e911f92
20:40:27 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f
20:40:27 Successfully built omero_marshal
20:40:28 Installing collected packages: omero_marshal
20:40:28 Successfully installed omero_marshal-0.9.1.dev0
20:40:28 + for x in *.tar.gz
20:40:28 + pip install -U omero_py-5.19.3.dev0.tar.gz
20:40:28 Processing ./omero_py-5.19.3.dev0.tar.gz
20:40:29 Installing build dependencies: started
20:40:30 Installing build dependencies: finished with status 'done'
20:40:30 Getting requirements to build wheel: started
20:40:30 Getting requirements to build wheel: finished with status 'done'
20:40:30 Installing backend dependencies: started
20:40:31 Installing backend dependencies: finished with status 'done'
20:40:31 Preparing metadata (pyproject.toml): started
20:40:31 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:31 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.18)
20:40:31 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.4.4)
20:40:31 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.0.0)
20:40:31 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (1.26.4)
20:40:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (10.3.0)
20:40:31 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (6.0.1)
20:40:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (3.6.5)
20:40:32 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.31.0)
20:40:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.3.dev0) (2.8.2)
20:40:32 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.3.2)
20:40:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (3.7)
20:40:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.3.dev0) (2024.2.2)
20:40:32 Building wheels for collected packages: omero-py
20:40:32 Building wheel for omero-py (pyproject.toml): started
20:40:33 Building wheel for omero-py (pyproject.toml): finished with status 'done'
20:40:33 Created wheel for omero-py: filename=omero_py-5.19.3.dev0-py3-none-any.whl size=2783096 sha256=fa654e89ac48906badefa0c5a90d2570a3a29a9ffca57b0bf25165d555af0030
20:40:33 Stored in directory: /home/omero/.cache/pip/wheels/da/30/d3/f2a83bdd6a0fbad84aa00dad9eb9431eedebb0e1310be5dd41
20:40:33 Successfully built omero-py
20:40:33 Installing collected packages: omero-py
20:40:33 Attempting uninstall: omero-py
20:40:33 Found existing installation: omero-py 5.19.2
20:40:33 Uninstalling omero-py-5.19.2:
20:40:33 Successfully uninstalled omero-py-5.19.2
20:40:35 Successfully installed omero-py-5.19.3.dev0
20:40:35 + for x in *.tar.gz
20:40:35 + pip install -U omero_scripts-5.8.3.dev0.tar.gz
20:40:36 Processing ./omero_scripts-5.8.3.dev0.tar.gz
20:40:36 Installing build dependencies: started
20:40:37 Installing build dependencies: finished with status 'done'
20:40:37 Getting requirements to build wheel: started
20:40:38 Getting requirements to build wheel: finished with status 'done'
20:40:38 Installing backend dependencies: started
20:40:38 Installing backend dependencies: finished with status 'done'
20:40:38 Preparing metadata (pyproject.toml): started
20:40:39 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:39 Building wheels for collected packages: omero-scripts
20:40:39 Building wheel for omero-scripts (pyproject.toml): started
20:40:39 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
20:40:39 Created wheel for omero-scripts: filename=omero_scripts-5.8.3.dev0-py3-none-any.whl size=116568 sha256=3fac74e5befd94aab684d7186929aee3e4a9dd7114bf989b74047f5a3e319dbc
20:40:39 Stored in directory: /home/omero/.cache/pip/wheels/73/b0/4e/389698a580647ec1c43b5854d9aab45dff88e4662759ee2446
20:40:39 Successfully built omero-scripts
20:40:39 Installing collected packages: omero-scripts
20:40:39 Successfully installed omero-scripts-5.8.3.dev0
20:40:39 + for x in *.tar.gz
20:40:39 + pip install -U omero_web-5.25.1.dev0.tar.gz
20:40:40 Processing ./omero_web-5.25.1.dev0.tar.gz
20:40:40 Installing build dependencies: started
20:40:42 Installing build dependencies: finished with status 'done'
20:40:42 Getting requirements to build wheel: started
20:40:42 Getting requirements to build wheel: finished with status 'done'
20:40:42 Installing backend dependencies: started
20:40:43 Installing backend dependencies: finished with status 'done'
20:40:43 Preparing metadata (pyproject.toml): started
20:40:43 Preparing metadata (pyproject.toml): finished with status 'done'
20:40:43 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (5.19.3.dev0)
20:40:43 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.25.1.dev0)
20:40:43 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB)
20:40:43 Collecting Django<4.3,>=4.2.3 (from omero-web==5.25.1.dev0)
20:40:43 Using cached Django-4.2.11-py3-none-any.whl.metadata (4.2 kB)
20:40:43 Collecting django-pipeline==2.1.0 (from omero-web==5.25.1.dev0)
20:40:43 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB)
20:40:43 Collecting django-cors-headers==3.7.0 (from omero-web==5.25.1.dev0)
20:40:43 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
20:40:43 Collecting django-csp (from omero-web==5.25.1.dev0)
20:40:43 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
20:40:43 Collecting whitenoise>=5.3.0 (from omero-web==5.25.1.dev0)
20:40:43 Using cached whitenoise-6.6.0-py3-none-any.whl.metadata (3.7 kB)
20:40:43 Collecting gunicorn>=19.3 (from omero-web==5.25.1.dev0)
20:40:43 Using cached gunicorn-22.0.0-py3-none-any.whl.metadata (4.4 kB)
20:40:43 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (0.9.1.dev0)
20:40:43 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (10.3.0)
20:40:43 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2024.1)
20:40:43 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (2.8.2)
20:40:43 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.25.1.dev0) (24.0)
20:40:44 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
20:40:44 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
20:40:44 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
20:40:44 Using cached sqlparse-0.5.0-py3-none-any.whl.metadata (3.9 kB)
20:40:44 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.18)
20:40:44 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.4.4)
20:40:44 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.0.0)
20:40:44 Requirement already satisfied: numpy in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (1.26.4)
20:40:44 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (6.0.1)
20:40:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.6.5)
20:40:44 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.25.1.dev0) (2.31.0)
20:40:44 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.25.1.dev0)
20:40:44 Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
20:40:44 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.3.2)
20:40:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (3.7)
20:40:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.25.1.dev0) (2024.2.2)
20:40:44 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
20:40:44 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB)
20:40:44 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB)
20:40:44 Using cached Django-4.2.11-py3-none-any.whl (8.0 MB)
20:40:44 Using cached gunicorn-22.0.0-py3-none-any.whl (84 kB)
20:40:44 Using cached whitenoise-6.6.0-py3-none-any.whl (19 kB)
20:40:44 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
20:40:44 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
20:40:44 Using cached sqlparse-0.5.0-py3-none-any.whl (43 kB)
20:40:44 Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
20:40:44 Building wheels for collected packages: omero-web
20:40:44 Building wheel for omero-web (pyproject.toml): started
20:40:45 Building wheel for omero-web (pyproject.toml): finished with status 'done'
20:40:45 Created wheel for omero-web: filename=omero_web-5.25.1.dev0-py3-none-any.whl size=2768887 sha256=6589776d67d1adff45970e527deaba666fcfbbff0ff7b34469180bb863ba91be
20:40:45 Stored in directory: /home/omero/.cache/pip/wheels/33/ba/09/ce4e387d041ff0c2197723e41a9f679d0a8e4d0d4f906c19c9
20:40:45 Successfully built omero-web
20:40:45 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web
20:40:48 Successfully installed Django-4.2.11 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-22.0.0 omero-web-5.25.1.dev0 sqlparse-0.5.0 typing-extensions-4.11.0 whitenoise-6.6.0
20:40:48 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
20:40:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
20:40:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
20:40:48 --2024-05-01 20:40:48-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
20:40:48 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.110.133, ...
20:40:48 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
20:40:48 HTTP request sent, awaiting response... 200 OK
20:40:48 Length: 94763 (93K) [text/plain]
20:40:48 Saving to: ‘Figure_To_Pdf.py’
20:40:48
20:40:48 0K .......... .......... .......... .......... .......... 54% 3.83M 0s
20:40:48 50K .......... .......... .......... .......... .. 100% 14.6M=0.02s
20:40:48
20:40:48 2024-05-01 20:40:48 (5.80 MB/s) - ‘Figure_To_Pdf.py’ saved [94763/94763]
20:40:48
20:40:48 + chmod 755 Figure_To_Pdf.py
20:40:48 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
20:40:48 + omero config set omero.db.name OMERO-server
20:40:50 + omero config set omero.db.host pg
20:40:51 + omero config set omero.db.user postgres
20:40:52 + omero config set omero.data.dir /home/omero/omero-server-data
20:40:53 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
20:40:55 + omero config set omero.db.poolsize 25
20:40:56 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
20:40:57 + omero config set omero.security.trustStorePassword changeit
20:40:59 + omero config set omero.mail.config true
20:41:00 + omero config set omero.mail.from qa@openmicroscopy.org.uk
20:41:01 + omero config set omero.mail.host smtp.dundee.ac.uk
20:41:02 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
20:41:04 + omero certificates
20:41:05 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022)
20:41:05 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
20:41:05 + '[' false = true ']'
20:41:05 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
20:41:05 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
20:41:05 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
20:41:05 2024-05-01 20:41:05,755 [ omego.db] DEBUG dbcommand => upgrade
20:41:05 2024-05-01 20:41:05,755 [ omego.db] DEBUG dbhost => localhost
20:41:05 2024-05-01 20:41:05,755 [ omego.db] DEBUG dbname => OMERO-server
20:41:05 2024-05-01 20:41:05,755 [ omego.db] DEBUG dbpass => omero
20:41:05 2024-05-01 20:41:05,755 [ omego.db] DEBUG dbuser => omero
20:41:05 2024-05-01 20:41:05,755 [ omego.db] DEBUG rootpass => omero
20:41:05 2024-05-01 20:41:05,755 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
20:41:05 2024-05-01 20:41:05,755 [omego.extern] INFO Executing : omero version
20:41:06 OMERO.py version:
20:41:06 OMERO.server version:
20:41:06 5.6.3-458-da8aba771d-ice36
20:41:06 5.19.3.dev0
20:41:07 2024-05-01 20:41:07,144 [omego.extern] INFO Completed [1.389 s]
20:41:07 2024-05-01 20:41:07,145 [omego.extern] DEBUG Using omero CLI from omero
20:41:07 2024-05-01 20:41:07,145 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
20:41:07 2024-05-01 20:41:07,145 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:41:07 2024-05-01 20:41:07,145 [omego.extern] INFO Executing : omero config get --show-password
20:41:08 2024-05-01 20:41:08,438 [omego.extern] INFO Completed [1.293 s]
20:41:08 2024-05-01 20:41:08,438 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:41:08 2024-05-01 20:41:08,438 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
20:41:08 2024-05-01 20:41:08,444 [omego.extern] INFO Completed [0.006 s]
20:41:08 2024-05-01 20:41:08,444 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.2\n'
20:41:08 2024-05-01 20:41:08,444 [ omego.db] INFO psql version: psql (PostgreSQL) 16.2
20:41:08
20:41:08 2024-05-01 20:41:08,444 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:41:08 2024-05-01 20:41:08,444 [omego.extern] INFO Executing : omero config get --show-password
20:41:09 2024-05-01 20:41:09,739 [omego.extern] INFO Completed [1.295 s]
20:41:09 2024-05-01 20:41:09,740 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:41:09 2024-05-01 20:41:09,740 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
20:41:09 2024-05-01 20:41:09,749 [omego.extern] INFO Completed [0.009 s]
20:41:09 2024-05-01 20:41:09,749 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.19.0.6") at port "5432".\n'
20:41:09 2024-05-01 20:41:09,749 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
20:41:09 2024-05-01 20:41:09,749 [omego.extern] INFO Running [current environment]: omero config get --show-password
20:41:09 2024-05-01 20:41:09,749 [omego.extern] INFO Executing : omero config get --show-password
20:41:11 2024-05-01 20:41:11,011 [omego.extern] INFO Completed [1.262 s]
20:41:11 2024-05-01 20:41:11,011 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
20:41:11 2024-05-01 20:41:11,011 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
20:41:11 2024-05-01 20:41:11,021 [omego.extern] INFO Completed [0.010 s]
20:41:11 2024-05-01 20:41:11,022 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
20:41:11 2024-05-01 20:41:11,022 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
20:41:11 2024-05-01 20:41:11,023 [ omego.db] INFO Database is already at OMERO5.4__0
20:41:11 + export LANG=en_US.UTF-8
20:41:11 + LANG=en_US.UTF-8
20:41:11 + export LANGUAGE=en_US:en
20:41:11 + LANGUAGE=en_US:en
20:41:11 + export LC_ALL=en_US.UTF-8
20:41:11 + LC_ALL=en_US.UTF-8
20:41:11 + BUILD_ID=DONT_KILL_ME
20:41:11 + omero admin start
20:41:20 No descriptor given. Using etc/grid/default.xml
20:41:27 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
20:41:27 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
20:41:27 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
20:41:27 Waiting on startup. Use CTRL-C to exit
20:41:27 + omero admin waitup
20:41:29 Waiting on startup. Use CTRL-C to exit
20:41:29 + omero admin diagnostics
20:41:30
20:41:30 ================================================================================
20:41:30 OMERO Diagnostics (admin)
20:41:30 ================================================================================
20:41:30
20:41:30 Commands: java -version 11.0.22 (/usr/bin/java)
20:41:30 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
20:41:30 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
20:41:30 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
20:41:30 Commands: psql --version 16.2 (/usr/bin/psql)
20:41:30 Commands: openssl version 3.0.71 (/usr/bin/openssl)
20:41:30
20:41:30 Component: OMERO.py 5.19.3.dev0
20:41:30 Component: OMERO.server 5.6.3-458-da8aba771d-ice36
20:41:30
20:41:30 Server: icegridnode running
20:41:30 Server: Blitz-0 active (pid = 25835, enabled)
20:41:30 Server: DropBox activating (enabled)
20:41:30 Server: FileServer active (pid = 25868, enabled)
20:41:30 Server: Indexer-0 activating (enabled)
20:41:30 Server: MonitorServer active (pid = 25871, enabled)
20:41:30 Server: OMERO.Glacier2 active (pid = 25870, enabled)
20:41:30 Server: OMERO.IceStorm active (pid = 25878, enabled)
20:41:30 Server: PixelData-0 activating (enabled)
20:41:30 Server: Processor-0 activating (enabled)
20:41:30 Server: Tables-0 activating (enabled)
20:41:30 Server: TestDropBox inactive (enabled)
20:41:30
20:41:30 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
20:41:30 Log files: Blitz-0.log 21.2 KB errors=0 warnings=1
20:41:30 Log files: DropBox.log 121 B
20:41:30 Log files: FileServer.log 114 B
20:41:30 Log files: Indexer-0.log 114 B
20:41:30 Log files: MonitorServer.log 117 B
20:41:30 Log files: PixelData-0.log 114 B
20:41:30 Log files: Processor-0.log 281 B
20:41:30 Log files: Tables-0.log 281 B
20:41:30 Log files: TestDropBox.log n/a
20:41:30 Log files: master.err 270 B
20:41:30 Log files: master.out 41.5 KB
20:41:30 Log files: Total size 0.06 MB
20:41:30
20:41:30
20:41:30 Environment:OMERO_HOME=(unset)
20:41:30 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
20:41:30 Environment:OMERO_NODE=(unset)
20:41:30 Environment:OMERO_MASTER=(unset)
20:41:30 Environment:OMERO_USERDIR=(unset)
20:41:30 Environment:OMERO_TMPDIR=(unset)
20:41:30 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:41:30 Environment:PYTHONPATH=(unset)
20:41:30 Environment:ICE_HOME=/opt/ice-3.6.5
20:41:30 Environment:LD_LIBRARY_PATH=(unset)
20:41:30 Environment:DYLD_LIBRARY_PATH=(unset)
20:41:30
20:41:30 OMERO SSL port:4064
20:41:30 OMERO TCP port:4063
20:41:30 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
20:41:30 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
20:41:30
20:41:30 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:41:30 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:41:30 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:41:30 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
20:41:30
20:41:30 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 1 May 2024 e7487ff4837e7deaafd1a9008b335c6f974f1d3f
20:41:30 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 1 May 2024 e7487ff4837e7deaafd1a9008b335c6f974f1d3f
20:41:30 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 1 May 2024 e7487ff4837e7deaafd1a9008b335c6f974f1d3f
20:41:30 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:41:30 Jar: lib/server/ome-common.jar OME Common Java 6.0.23-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:41:30 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:41:30 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:41:30 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:41:30 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 1 May 2024 37fc5443ad3d67938dbf61a8ef77d7896f1daf74
20:41:30 Jar: lib/server/omero-blitz.jar jar 5.7.3-SNAPSHOT
20:41:30 Jar: lib/server/omero-common.jar jar 5.6.5-SNAPSHOT
20:41:30 Jar: lib/server/omero-gateway.jar jar 5.9.1-SNAPSHOT
20:41:30 Jar: lib/server/omero-model.jar jar 5.6.14-SNAPSHOT
20:41:30 Jar: lib/server/omero-renderer.jar jar 5.5.16-SNAPSHOT
20:41:30 Jar: lib/server/omero-romio.jar jar 5.7.6-SNAPSHOT
20:41:30 Jar: lib/server/omero-server.jar jar 5.6.11-SNAPSHOT
20:41:30 + deactivate
20:41:30 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
20:41:30 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
20:41:30 + export PATH
20:41:30 + unset _OLD_VIRTUAL_PATH
20:41:30 + '[' -n '' ']'
20:41:30 + '[' -n /bin/bash -o -n '' ']'
20:41:30 + hash -r
20:41:30 + '[' -n '' ']'
20:41:30 + unset VIRTUAL_ENV
20:41:30 + '[' '!' '' = nondestructive ']'
20:41:30 + unset -f deactivate
20:41:30 Finished: SUCCESS
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