00:30:19 Started by upstream project "Trigger" build number 149
00:30:19 originally caused by:
00:30:19 Started by timer
00:30:19 Running as SYSTEM
00:30:20 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:30:20 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12467452447300884727.sh
00:30:20 + source /home/settings.env
00:30:20 ++ OMERO_DB_HOST=pg
00:30:20 ++ OMERO_DB_USER=postgres
00:30:20 ++ OMERO_DB_PASS=
00:30:20 ++ OMERO_ROOT_PASS=omero
00:30:20 ++ OMERO_DATA_DIR=/OMERO
00:30:20 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:30:20 + OMERO_DB_NAME=OMERO-server
00:30:20 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:30:20 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:30:20 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:30:20 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:30:20 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:30:20 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:30:20 ++ deactivate nondestructive
00:30:20 ++ '[' -n '' ']'
00:30:20 ++ '[' -n '' ']'
00:30:20 ++ hash -r
00:30:20 ++ '[' -n '' ']'
00:30:20 ++ unset VIRTUAL_ENV
00:30:20 ++ unset VIRTUAL_ENV_PROMPT
00:30:20 ++ '[' '!' nondestructive = nondestructive ']'
00:30:20 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:30:20 ++ export VIRTUAL_ENV
00:30:20 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:30:20 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:30:20 ++ export PATH
00:30:20 ++ '[' -n '' ']'
00:30:20 ++ '[' -z '' ']'
00:30:20 ++ _OLD_VIRTUAL_PS1=
00:30:20 ++ PS1='(.venv3) '
00:30:20 ++ export PS1
00:30:20 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:30:20 ++ export VIRTUAL_ENV_PROMPT
00:30:20 ++ hash -r
00:30:20 + omero admin stop
00:30:40 Waiting on shutdown. Use CTRL-C to exit
00:30:40 .+ sleep 5
00:30:55 + deactivate
00:30:55 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:30:55 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:30:55 + export PATH
00:30:55 + unset _OLD_VIRTUAL_PATH
00:30:55 + '[' -n '' ']'
00:30:55 + hash -r
00:30:55 + '[' -n '' ']'
00:30:55 + unset VIRTUAL_ENV
00:30:55 + unset VIRTUAL_ENV_PROMPT
00:30:55 + '[' '!' '' = nondestructive ']'
00:30:55 + unset -f deactivate
00:30:55 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:33:31 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:33:51 + '[' false = true ']'
00:33:51 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:33:51 Skipping PURGE_DATA:CleanDbAndRepo
00:33:51 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.33.4.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:33:58 Copied 1 artifact from "OMERO-build" build number 128
00:33:59 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 116
00:33:59 Copied 2 artifacts from "OMERO-build-build" build number 127
00:33:59 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6753706488113010518.sh
00:33:59 + source /home/settings.env
00:33:59 ++ OMERO_DB_HOST=pg
00:33:59 ++ OMERO_DB_USER=postgres
00:33:59 ++ OMERO_DB_PASS=
00:33:59 ++ OMERO_ROOT_PASS=omero
00:33:59 ++ OMERO_DATA_DIR=/OMERO
00:33:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:33:59 + OMERO_DB_NAME=OMERO-server
00:33:59 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:33:59 + mkdir -p /home/omero/omero-server-data
00:33:59 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:33:59 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:59 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:33:59 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:33:59 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:33:59 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:33:59 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:33:59 ++ ls OMERO.server-5.6.3-689-1461586dc7-ice36-b128.zip
00:33:59 + ZIP=OMERO.server-5.6.3-689-1461586dc7-ice36-b128.zip
00:33:59 + '[' '!' -z '' ']'
00:33:59 + DIST=OMERO.server-5.6.3-689-1461586dc7-ice36-b128
00:33:59 + unzip OMERO.server-5.6.3-689-1461586dc7-ice36-b128.zip
00:33:59 Archive: OMERO.server-5.6.3-689-1461586dc7-ice36-b128.zip
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/blitz/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/grid/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/profiles/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/error/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/grid/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/luts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/luts/janelia/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/luts/matplotlib/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/luts/ncsa_paledit/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/luts/seaborn/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/luts/wcif/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/omero/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/omero/analysis_scripts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/omero/annotation_scripts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/omero/export_scripts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/omero/figure_scripts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/omero/import_scripts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/scripts/omero/util_scripts/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/server/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/misc/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__1/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__10/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__11/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__2/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__3/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__4/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__5/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__6/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__7/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__8/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__9/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__4/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__5/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__6/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__7/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.1__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.2__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.2__0/t/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.3__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.4__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.0__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.1__1/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.2__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.3__0/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4DEV__1/
00:33:59 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4DEV__2/
00:34:00 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4DEV__3/
00:34:00 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/
00:34:00 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/var/
00:34:00 creating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/var/tmp/
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/LICENSE.txt
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/backup.cfg
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/blitz/mail-senders.example
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/blitz/mail-server.example
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/build.properties
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/env.bat
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/env.sh
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/hibernate.properties
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/ice.config
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/logback-cli.xml
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/logback-indexing-cli.xml
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/logback-indexing.xml
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/logback.xml
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/mime.types
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/node1.cfg
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/node2.cfg
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/omero.properties
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/profiles/psql
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/rollover.cfg
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/Windows.cfg
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/error/maintainance.html
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/grid/README
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/grid/default.xml
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/grid/templates.xml
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/grid/windefault.xml
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/ice.config
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/internal.cfg
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/master.cfg
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/templates/robot.template
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/etc/testdropbox.config
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/history.rst
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/accessors-smart.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/activation.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/aggdesigner-algorithm.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/aircompressor.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/annotations.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/antlr.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/aopalliance.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/apache-client.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/apiguardian-api.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/arns.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/asm.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/auth.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/avatica-core.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/avatica-metrics.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/aws-core.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/aws-query-protocol.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/aws-xml-protocol.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/base.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-anim.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-awt-util.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-bridge.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-codec.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-constants.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-css.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-dom.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-ext.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-gvt.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-i18n.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-parser.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-script.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-shared-resources.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-svg-dom.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-svggen.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-transcoder.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-util.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/batik-xml.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/blosc-java.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/btm.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/caffeine.jar
00:34:00 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/calcite-core.jar
00:34:01 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/calcite-linq4j.jar
00:34:01 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/lib/client/cdm-core.jar
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00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/gtest.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/iconsweets_license.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/jamon.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/jmock.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/jquery.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/jtidy.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/lgpl-3.0.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/lgpl-v2.0.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/lgpl-v2.1.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/lgpl-v3.0.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/lgpl.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/matplotlib.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/mit.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/mpl-v1_0.htm
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/npl-1_1.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/path.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/pil.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/postgresql.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/psf-v2.0.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/psf-v2.5.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/scons.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/slf4j.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/tablelayout.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/which.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/zlib-libpng.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/share/licenses/zpl-v2.1.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/README.txt
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/misc/Makefile
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/misc/current.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/misc/enums.py
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__1/OMERO3__7.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__10/OMERO3A__9.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__11/OMERO3A__10.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__11/OMERO3A__5.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__2/OMERO3A__1.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__3/OMERO3A__2.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__3/OMERO3__5.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__4/OMERO3A__3.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__4/OMERO3__5.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__5/OMERO3A__4.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__6/OMERO3A__5.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__7/OMERO3A__6.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__8/OMERO3A__6.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3A__9/OMERO3A__8.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__4/OMERO3__1.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__5/OMERO3__4.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__6/OMERO3__5.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO3__7/OMERO3__6.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.1__0/OMERO4__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO4__0/OMERO3A__11.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:34:15 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/psql-footer.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/psql-header.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/schema.sql
00:34:16 inflating: OMERO.server-5.6.3-689-1461586dc7-ice36-b128/sql/psql/OMERO5.4__0/views.sql
00:34:16 + rm -f OMERO.server-5.6.3-689-1461586dc7-ice36-b128.zip
00:34:16 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-689-1461586dc7-ice36-b128 /home/omero/workspace/OMERO-server/OMERO.server
00:34:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:34:16 ++ deactivate nondestructive
00:34:16 ++ '[' -n '' ']'
00:34:16 ++ '[' -n '' ']'
00:34:16 ++ hash -r
00:34:16 ++ '[' -n '' ']'
00:34:16 ++ unset VIRTUAL_ENV
00:34:16 ++ unset VIRTUAL_ENV_PROMPT
00:34:16 ++ '[' '!' nondestructive = nondestructive ']'
00:34:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:34:16 ++ export VIRTUAL_ENV
00:34:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:34:16 ++ export PATH
00:34:16 ++ '[' -n '' ']'
00:34:16 ++ '[' -z '' ']'
00:34:16 ++ _OLD_VIRTUAL_PS1=
00:34:16 ++ PS1='(.venv3) '
00:34:16 ++ export PS1
00:34:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:34:16 ++ export VIRTUAL_ENV_PROMPT
00:34:16 ++ hash -r
00:34:16 + python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70'
00:34:17 Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70
00:34:17 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB)
00:34:17 Installing collected packages: pip
00:34:17 Attempting uninstall: pip
00:34:17 Found existing installation: pip 24.0
00:34:18 Uninstalling pip-24.0:
00:34:18 Successfully uninstalled pip-24.0
00:34:28 Successfully installed pip-26.2.2
00:34:28
00:34:28 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:28 [notice] To update, run: pip install --upgrade pip
00:34:28 + python -m pip install --upgrade certifi
00:34:30 Collecting certifi
00:34:30 Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB)
00:34:30 Using cached certifi-2026.10.23-py3-none-any.whl (135 kB)
00:34:30 Installing collected packages: certifi
00:34:30 Successfully installed certifi-2026.10.23
00:34:30
00:34:30 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:30 [notice] To update, run: pip install --upgrade pip
00:34:30 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:34:31 Collecting zeroc-ice==3.6.5
00:34:31 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:34:34 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.6 MB/s 0:00:02
00:34:34 Installing collected packages: zeroc-ice
00:34:36 Successfully installed zeroc-ice-3.6.5
00:34:36
00:34:36 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:36 [notice] To update, run: pip install --upgrade pip
00:34:36 + pip install markdown
00:34:37 Collecting markdown
00:34:37 Using cached markdown-3.11.3-py3-none-any.whl.metadata (5.1 kB)
00:34:37 Using cached markdown-3.11.3-py3-none-any.whl (116 kB)
00:34:38 Installing collected packages: markdown
00:34:38 Successfully installed markdown-3.11.3
00:34:38
00:34:38 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:38 [notice] To update, run: pip install --upgrade pip
00:34:38 + pip install reportlab
00:34:39 Collecting reportlab
00:34:39 Using cached reportlab-5.1.0-py3-none-any.whl.metadata (1.6 kB)
00:34:39 Collecting pillow>=9.0.0 (from reportlab)
00:34:39 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
00:34:40 Collecting charset-normalizer (from reportlab)
00:34:40 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB)
00:34:40 Using cached reportlab-5.1.0-py3-none-any.whl (2.0 MB)
00:34:40 Using cached pillow-13.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
00:34:40 Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB)
00:34:40 Installing collected packages: pillow, charset-normalizer, reportlab
00:34:47
00:34:47 Successfully installed charset-normalizer-3.5.2 pillow-13.0.0 reportlab-5.1.0
00:34:47
00:34:47 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:47 [notice] To update, run: pip install --upgrade pip
00:34:47 + pip install pyarrow
00:34:48 Collecting pyarrow
00:34:48 Using cached pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:34:48 Using cached pyarrow-26.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (55.0 MB)
00:34:48 Installing collected packages: pyarrow
00:34:56 Successfully installed pyarrow-26.0.1
00:34:56
00:34:56 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:34:56 [notice] To update, run: pip install --upgrade pip
00:34:56 + pip install omego
00:34:57 Collecting omego
00:34:57 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:34:57 Collecting future (from omego)
00:34:57 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:34:58 Collecting yaclifw>=0.1.1 (from omego)
00:34:58 Using cached yaclifw-0.2.0-py3-none-any.whl
00:34:58 Collecting six (from yaclifw>=0.1.1->omego)
00:34:58 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:34:58 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:34:58 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:34:58 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:34:58 Installing collected packages: six, future, yaclifw, omego
00:35:02
00:35:02 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:35:02
00:35:02 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:35:02 [notice] To update, run: pip install --upgrade pip
00:35:02 + pip install tables
00:35:03 Collecting tables
00:35:03 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:35:03 Collecting numpy>=1.20.0 (from tables)
00:35:03 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:35:03 Collecting numexpr>=2.6.2 (from tables)
00:35:04 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:35:04 Collecting packaging (from tables)
00:35:04 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
00:35:04 Collecting py-cpuinfo (from tables)
00:35:04 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:35:04 Collecting blosc2>=2.3.0 (from tables)
00:35:04 Using cached blosc2-4.15.0-cp311-abi3-manylinux_2_28_x86_64.whl.metadata (8.4 kB)
00:35:04 Collecting ndindex (from blosc2>=2.3.0->tables)
00:35:04 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:35:04 Collecting msgpack (from blosc2>=2.3.0->tables)
00:35:05 Using cached msgpack-1.2.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
00:35:05 Collecting pydantic (from blosc2>=2.3.0->tables)
00:35:05 Using cached pydantic-2.14.3-py3-none-any.whl.metadata (141 kB)
00:35:05 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
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00:35:05 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
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00:35:06 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
00:35:06 Using cached anyio-4.16.0-py3-none-any.whl.metadata (4.7 kB)
00:35:06 Requirement already satisfied: certifi in ./.venv3/lib/python3.11/site-packages (from httpx[http2]->blosc2>=2.3.0->tables) (2026.10.23)
00:35:06 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
00:35:06 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
00:35:06 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
00:35:06 Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB)
00:35:06 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
00:35:06 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
00:35:06 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
00:35:06 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
00:35:06 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
00:35:06 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
00:35:06 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
00:35:06 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
00:35:07 Collecting typing_extensions>=4.16.0 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
00:35:07 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
00:35:07 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
00:35:07 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
00:35:08 Collecting pydantic-core==2.50.4 (from pydantic->blosc2>=2.3.0->tables)
00:35:08 Using cached pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.6 kB)
00:35:08 Collecting typing-inspection>=0.4.4 (from pydantic->blosc2>=2.3.0->tables)
00:35:08 Using cached typing_inspection-0.4.5-py3-none-any.whl.metadata (2.6 kB)
00:35:08 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
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00:35:08 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
00:35:08 Using cached pygments-2.21.0-py3-none-any.whl.metadata (2.5 kB)
00:35:08 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
00:35:08 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
00:35:08 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:35:08 Using cached blosc2-4.15.0-cp311-abi3-manylinux_2_28_x86_64.whl (7.9 MB)
00:35:08 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
00:35:08 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:35:09 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
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00:35:09 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
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00:35:09 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:35:09 Using cached packaging-26.3-py3-none-any.whl (129 kB)
00:35:09 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:35:09 Using cached pydantic-2.14.3-py3-none-any.whl (494 kB)
00:35:09 Using cached pydantic_core-2.50.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (2.3 MB)
00:35:09 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
00:35:09 Using cached typing_inspection-0.4.5-py3-none-any.whl (14 kB)
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00:35:10 Using cached threadpoolctl-3.8.0-py3-none-any.whl (32 kB)
00:35:10 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
00:35:46
00:35:46 Successfully installed annotated-types-0.8.0 anyio-4.16.0 blosc2-4.15.0 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.20 markdown-it-py-4.3.0 mdurl-0.1.2 msgpack-1.2.4 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.14.3 pydantic-core-2.50.4 pygments-2.21.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.8.0 typing-inspection-0.4.5 typing_extensions-4.16.0
00:35:46
00:35:46 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:35:46 [notice] To update, run: pip install --upgrade pip
00:35:47 + pip install jinja2
00:35:47 Collecting jinja2
00:35:48 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:35:48 Collecting MarkupSafe>=2.0 (from jinja2)
00:35:48 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:35:48 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:35:48 Using cached markupsafe-3.0.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:35:48 Installing collected packages: MarkupSafe, jinja2
00:35:49
00:35:49 Successfully installed MarkupSafe-3.0.4 jinja2-3.1.6
00:35:49
00:35:49 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:35:49 [notice] To update, run: pip install --upgrade pip
00:35:49 + pip install omero-py
00:35:50 Collecting omero-py
00:35:50 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
00:35:50 Collecting appdirs (from omero-py)
00:35:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:35:50 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py) (1.0.0)
00:35:50 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py) (2.4.6)
00:35:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py) (13.0.0)
00:35:50 Collecting PyYAML (from omero-py)
00:35:50 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:35:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py) (3.6.5)
00:35:50 Collecting requests (from omero-py)
00:35:50 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
00:35:50 Collecting portalocker (from omero-py)
00:35:50 Using cached portalocker-4.4.2-py3-none-any.whl.metadata (10 kB)
00:35:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.5.2)
00:35:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (3.20)
00:35:50 Collecting urllib3<3,>=1.26 (from requests->omero-py)
00:35:50 Using cached urllib3-2.8.0-py3-none-any.whl.metadata (7.4 kB)
00:35:50 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py) (2026.10.23)
00:35:51 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
00:35:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:35:51 Using cached portalocker-4.4.2-py3-none-any.whl (129 kB)
00:35:51 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:35:51 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
00:35:51 Using cached urllib3-2.8.0-py3-none-any.whl (135 kB)
00:35:51 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
00:36:04
00:36:04 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.4.2 requests-2.34.2 urllib3-2.8.0
00:36:04
00:36:04 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:36:04 [notice] To update, run: pip install --upgrade pip
00:36:04 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:36:05 Collecting omero-metadata
00:36:05 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-7kzzg86m/omero-metadata_7932bf88aa784a5c965b4325945c26fd
00:36:05 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-7kzzg86m/omero-metadata_7932bf88aa784a5c965b4325945c26fd
00:36:07 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 9edff1ecaffca22a962561591f95a92bb6569b5e
00:36:07 Installing build dependencies: started
00:36:08 Installing build dependencies: finished with status 'done'
00:36:08 Getting requirements to build wheel: started
00:36:08 Getting requirements to build wheel: finished with status 'done'
00:36:08 Preparing metadata (pyproject.toml): started
00:36:08 Preparing metadata (pyproject.toml): finished with status 'done'
00:36:08 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-metadata) (5.23.0)
00:36:09 Collecting pandas<3,>=2 (from omero-metadata)
00:36:09 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
00:36:09 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
00:36:09 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
00:36:09 Using cached python_dateutil-4.0.0-py3-none-any.whl.metadata (7.3 kB)
00:36:09 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
00:36:09 Using cached pytz-2026.6-py2.py3-none-any.whl.metadata (22 kB)
00:36:09 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
00:36:09 Using cached tzdata-2026.6-py2.py3-none-any.whl.metadata (1.4 kB)
00:36:09 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:36:09 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:36:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (13.0.0)
00:36:09 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
00:36:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:36:09 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
00:36:09 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.4.2)
00:36:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.5.2)
00:36:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.20)
00:36:09 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.8.0)
00:36:09 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.10.23)
00:36:09 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
00:36:09 Using cached python_dateutil-4.0.0-py3-none-any.whl (92 kB)
00:36:09 Using cached pytz-2026.6-py2.py3-none-any.whl (506 kB)
00:36:09 Using cached tzdata-2026.6-py2.py3-none-any.whl (348 kB)
00:36:10 Building wheels for collected packages: omero-metadata
00:36:10 Building wheel for omero-metadata (pyproject.toml): started
00:36:10 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:36:10 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=75050d9a6cb201dcdfc35e13dd8403b95c1a0640a568b77d3e81072dea039cf0
00:36:10 Stored in directory: /tmp/pip-ephem-wheel-cache-o7dgjspj/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:36:10 Successfully built omero-metadata
00:36:10 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
00:36:46
00:36:46 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-4.0.0 pytz-2026.6 tzdata-2026.6
00:36:46
00:36:46 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:36:46 [notice] To update, run: pip install --upgrade pip
00:36:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:36:47 Collecting omero-cli-render
00:36:47 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-bunvzduq/omero-cli-render_a48cee4283694cf59eeef9e45e5cb17b
00:36:47 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-bunvzduq/omero-cli-render_a48cee4283694cf59eeef9e45e5cb17b
00:36:48 Running command git checkout -b merge_ci --track origin/merge_ci
00:36:48 Switched to a new branch 'merge_ci'
00:36:48 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:36:48 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit c8a85a8bd89936317168f3de9f78dbf54e20a9c2
00:36:48 Installing build dependencies: started
00:36:49 Installing build dependencies: finished with status 'done'
00:36:49 Getting requirements to build wheel: started
00:36:50 Getting requirements to build wheel: finished with status 'done'
00:36:50 Preparing metadata (pyproject.toml): started
00:36:50 Preparing metadata (pyproject.toml): finished with status 'done'
00:36:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:36:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-render) (5.23.0)
00:36:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:36:50 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:36:50 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
00:36:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (13.0.0)
00:36:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:36:50 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
00:36:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.4.2)
00:36:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.5.2)
00:36:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.20)
00:36:50 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.8.0)
00:36:50 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.10.23)
00:36:50 Building wheels for collected packages: omero-cli-render
00:36:50 Building wheel for omero-cli-render (pyproject.toml): started
00:36:50 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:36:50 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=de603a22efdee15d2dd4772971f6ccab9dca2ff0597c10cae2ab571550e37fb7
00:36:50 Stored in directory: /tmp/pip-ephem-wheel-cache-axnb8bkm/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:36:50 Successfully built omero-cli-render
00:36:50 Installing collected packages: omero-cli-render
00:36:50 Successfully installed omero-cli-render-0.8.2.dev0
00:36:50
00:36:50 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:36:50 [notice] To update, run: pip install --upgrade pip
00:36:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:36:51 Collecting omero-cli-duplicate
00:36:51 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-wzlghp_k/omero-cli-duplicate_85b881164bbe449e823273b81e60ec75
00:36:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-wzlghp_k/omero-cli-duplicate_85b881164bbe449e823273b81e60ec75
00:36:52 Running command git checkout -b merge_ci --track origin/merge_ci
00:36:52 Switched to a new branch 'merge_ci'
00:36:52 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:36:52 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit a2308ccbb4ee0452f95efb9d6ec374e1d326add8
00:36:52 Installing build dependencies: started
00:36:53 Installing build dependencies: finished with status 'done'
00:36:53 Getting requirements to build wheel: started
00:36:54 Getting requirements to build wheel: finished with status 'done'
00:36:54 Preparing metadata (pyproject.toml): started
00:36:54 Preparing metadata (pyproject.toml): finished with status 'done'
00:36:54 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
00:36:54 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:36:54 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:36:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
00:36:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (13.0.0)
00:36:54 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:36:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:36:54 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
00:36:54 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.4.2)
00:36:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.5.2)
00:36:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.20)
00:36:54 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.8.0)
00:36:54 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.10.23)
00:36:54 Building wheels for collected packages: omero-cli-duplicate
00:36:54 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:36:54 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:36:54 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=8c5058a9d47b3e34e3ef4ca52f94253d3e4319733335e31b5b10ae417d83d4fc
00:36:54 Stored in directory: /tmp/pip-ephem-wheel-cache-mac87336/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:36:54 Successfully built omero-cli-duplicate
00:36:54 Installing collected packages: omero-cli-duplicate
00:36:55 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:36:55
00:36:55 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:36:55 [notice] To update, run: pip install --upgrade pip
00:36:55 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:36:55 Collecting omero-cli-zarr
00:36:55 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-6hlrbaal/omero-cli-zarr_a0b3f944e76c4f689db9613728daac67
00:36:55 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-6hlrbaal/omero-cli-zarr_a0b3f944e76c4f689db9613728daac67
00:36:56 Running command git checkout -b merge_ci --track origin/merge_ci
00:36:57 Switched to a new branch 'merge_ci'
00:36:57 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:36:57 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit f8915f1e1f53c3d25648778664878054624e8de7
00:36:57 Installing build dependencies: started
00:36:58 Installing build dependencies: finished with status 'done'
00:36:58 Getting requirements to build wheel: started
00:36:58 Getting requirements to build wheel: finished with status 'done'
00:36:58 Installing backend dependencies: started
00:37:00 Installing backend dependencies: finished with status 'done'
00:37:00 Preparing metadata (pyproject.toml): started
00:37:00 Preparing metadata (pyproject.toml): finished with status 'done'
00:37:00 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
00:37:00 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:37:00 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
00:37:00 Requirement already satisfied: numpy in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
00:37:00 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:00 Using cached dask-2026.8.0-py3-none-any.whl.metadata (3.8 kB)
00:37:01 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:01 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
00:37:01 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:01 Using cached fsspec-2026.9.0-py3-none-any.whl.metadata (10 kB)
00:37:01 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:01 Using cached aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
00:37:02 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
00:37:02 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:02 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:37:02 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:02 Using cached toolz-1.2.0-py3-none-any.whl.metadata (5.2 kB)
00:37:02 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:02 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:37:02 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:02 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
00:37:02 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
00:37:02 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:37:03 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:03 Using cached click-8.5.1-py3-none-any.whl.metadata (2.6 kB)
00:37:03 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:03 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:37:03 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
00:37:03 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:03 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:37:03 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:37:03 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:03 Using cached importlib_metadata-10.2.0-py3-none-any.whl.metadata (4.6 kB)
00:37:03 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:03 Using cached s3fs-2026.9.0-py3-none-any.whl.metadata (1.2 kB)
00:37:03 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:03 Using cached zipp-4.1.2-py3-none-any.whl.metadata (3.6 kB)
00:37:04 Collecting lazy-importer>=0.1 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:04 Using cached lazy_importer-0.1.0-py3-none-any.whl.metadata (7.3 kB)
00:37:04 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:04 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
00:37:04 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
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00:37:05 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:05 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
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00:37:05 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.5)
00:37:05 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:37:05 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:37:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (13.0.0)
00:37:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:37:05 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.4.2)
00:37:05 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:37:05 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:37:05 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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00:37:05 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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00:37:06 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
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00:37:07 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
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00:37:10 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:37:10 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
00:37:10 Using cached s3fs-2026.9.0-py3-none-any.whl (33 kB)
00:37:10 Using cached aiobotocore-3.10.0-py3-none-any.whl (102 kB)
00:37:10 Using cached aiohttp-3.14.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.9 MB)
00:37:10 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:37:10 Using cached botocore-1.43.117-py3-none-any.whl (16.1 MB)
00:37:11 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:37:11 Using cached multidict-7.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (510 kB)
00:37:11 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:37:11 Using cached wrapt-2.5.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (240 kB)
00:37:11 Using cached yarl-1.25.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (117 kB)
00:37:11 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
00:37:11 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:37:11 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
00:37:11 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:37:11 Using cached propcache-0.5.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (235 kB)
00:37:11 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:37:11 Using cached imageio-2.38.1-py3-none-any.whl (328 kB)
00:37:11 Using cached lazy_loader-0.6-py3-none-any.whl (8.8 kB)
00:37:11 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:37:11 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:37:11 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:37:12 Using cached toolz-1.2.0-py3-none-any.whl (60 kB)
00:37:12 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
00:37:12 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:37:12 Using cached google_crc32c-1.9.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (36 kB)
00:37:12 Using cached numcodecs-0.16.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.3 MB)
00:37:12 Using cached zipp-4.1.2-py3-none-any.whl (10 kB)
00:37:12 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:37:12 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:37:12 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:37:12 Building wheels for collected packages: omero-cli-zarr
00:37:12 Building wheel for omero-cli-zarr (pyproject.toml): started
00:37:13 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:37:13 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev186+gf8915f1-py3-none-any.whl size=39540 sha256=15b755a2ea86f3d6b70b62a35229480b603b7a664cd45cbe26d6d91de22e3774
00:37:13 Stored in directory: /tmp/pip-ephem-wheel-cache-bm49es4u/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:37:13 Successfully built omero-cli-zarr
00:37:13 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, python-dateutil, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, lazy-importer, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:37:39 Attempting uninstall: python-dateutil
00:37:39 Found existing installation: python-dateutil 4.0.0
00:37:39 Uninstalling python-dateutil-4.0.0:
00:37:39 Successfully uninstalled python-dateutil-4.0.0
00:37:40 Attempting uninstall: pydantic-core
00:37:40 Found existing installation: pydantic_core 2.50.4
00:37:40 Uninstalling pydantic_core-2.50.4:
00:37:40 Successfully uninstalled pydantic_core-2.50.4
00:38:08 Attempting uninstall: pydantic
00:38:09 Found existing installation: pydantic 2.14.3
00:38:09 Uninstalling pydantic-2.14.3:
00:38:09 Successfully uninstalled pydantic-2.14.3
00:38:37
00:38:37 Successfully installed Deprecated-1.3.1 aiobotocore-3.10.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.117 click-8.5.1 cloudpickle-3.1.2 dask-2026.8.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.9.0 google-crc32c-1.9.0 imageio-2.38.1 importlib_metadata-10.2.0 jmespath-1.1.0 lazy-importer-0.1.0 lazy-loader-0.6 locket-1.0.0 multidict-7.2.1 networkx-3.6.1 numcodecs-0.16.6 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev186+gf8915f1 partd-1.4.2 propcache-0.5.4 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 python-dateutil-2.9.0.post0 rangehttpserver-1.4.0 s3fs-2026.9.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.2.0 wrapt-2.5.2 yarl-1.25.1 zarr-3.1.6 zipp-4.1.2
00:38:37
00:38:37 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:38:37 [notice] To update, run: pip install --upgrade pip
00:38:37 + pip install omero-certificates
00:38:39 Collecting omero-certificates
00:38:39 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:38:39 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.11/site-packages (from omero-certificates) (5.23.0)
00:38:39 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:38:39 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:38:39 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
00:38:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (13.0.0)
00:38:39 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:38:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:38:39 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
00:38:39 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.4.2)
00:38:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.5.2)
00:38:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.20)
00:38:39 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.8.0)
00:38:39 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.10.23)
00:38:39 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:38:39 Installing collected packages: omero-certificates
00:38:39 Successfully installed omero-certificates-0.4.0
00:38:39
00:38:39 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:38:39 [notice] To update, run: pip install --upgrade pip
00:38:39 + for x in *.tar.gz
00:38:39 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:38:40 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:38:40 Installing build dependencies: started
00:38:41 Installing build dependencies: finished with status 'done'
00:38:41 Getting requirements to build wheel: started
00:38:41 Getting requirements to build wheel: finished with status 'done'
00:38:41 Preparing metadata (pyproject.toml): started
00:38:42 Preparing metadata (pyproject.toml): finished with status 'done'
00:38:42 Requirement already satisfied: omero-py in ./.venv3/lib/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
00:38:42 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:38:42 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:38:42 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
00:38:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (13.0.0)
00:38:42 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:38:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:38:42 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
00:38:42 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.4.2)
00:38:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.5.2)
00:38:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.20)
00:38:42 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.8.0)
00:38:42 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.10.23)
00:38:42 Building wheels for collected packages: omero-dropbox
00:38:42 Building wheel for omero-dropbox (pyproject.toml): started
00:38:42 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:38:42 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=e79af1801e62fe1c512a6252e79d7eb38b63bdbd6e8a82622cb85c94cadc4da8
00:38:42 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:38:42 Successfully built omero-dropbox
00:38:42 Installing collected packages: omero-dropbox
00:38:43 Successfully installed omero-dropbox-5.7.1.dev0
00:38:43
00:38:43 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:38:43 [notice] To update, run: pip install --upgrade pip
00:38:43 + for x in *.tar.gz
00:38:43 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:38:43 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:38:43 Installing build dependencies: started
00:38:44 Installing build dependencies: finished with status 'done'
00:38:44 Getting requirements to build wheel: started
00:38:45 Getting requirements to build wheel: finished with status 'done'
00:38:45 Preparing metadata (pyproject.toml): started
00:38:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:38:45 Building wheels for collected packages: omero-marshal
00:38:45 Building wheel for omero-marshal (pyproject.toml): started
00:38:45 Building wheel for omero-marshal (pyproject.toml): finished with status 'done'
00:38:45 Created wheel for omero-marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88113 sha256=b0d1ed9e6c26dfda870b679669dcd3c38c9dde02d2da9c2d3557dee22c62d36a
00:38:45 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:38:45 Successfully built omero-marshal
00:38:46 Installing collected packages: omero-marshal
00:38:47 Successfully installed omero-marshal-0.9.2.dev0
00:38:47
00:38:47 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:38:47 [notice] To update, run: pip install --upgrade pip
00:38:47 + for x in *.tar.gz
00:38:47 + pip install -U omero_py-5.23.1.dev0.tar.gz
00:38:48 Processing ./omero_py-5.23.1.dev0.tar.gz
00:38:48 Installing build dependencies: started
00:38:49 Installing build dependencies: finished with status 'done'
00:38:49 Getting requirements to build wheel: started
00:38:50 Getting requirements to build wheel: finished with status 'done'
00:38:50 Preparing metadata (pyproject.toml): started
00:38:50 Preparing metadata (pyproject.toml): finished with status 'done'
00:38:50 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
00:38:50 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
00:38:50 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
00:38:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (13.0.0)
00:38:50 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
00:38:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
00:38:50 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
00:38:50 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.4.2)
00:38:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.5.2)
00:38:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.20)
00:38:50 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.8.0)
00:38:50 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.10.23)
00:38:50 Building wheels for collected packages: omero-py
00:38:50 Building wheel for omero-py (pyproject.toml): started
00:38:51 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:38:51 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2787154 sha256=00b5c32022cd7a97ccdc89b8c2abac05a6b3f11c27a3591076b4d573c5642f15
00:38:51 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
00:38:51 Successfully built omero-py
00:38:51 Installing collected packages: omero-py
00:38:51 Attempting uninstall: omero-py
00:38:51 Found existing installation: omero-py 5.23.0
00:38:52 Uninstalling omero-py-5.23.0:
00:39:00 Successfully uninstalled omero-py-5.23.0
00:39:12 Successfully installed omero-py-5.23.1.dev0
00:39:12
00:39:12 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:39:12 [notice] To update, run: pip install --upgrade pip
00:39:12 + for x in *.tar.gz
00:39:12 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:39:13 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:39:13 Installing build dependencies: started
00:39:14 Installing build dependencies: finished with status 'done'
00:39:14 Getting requirements to build wheel: started
00:39:14 Getting requirements to build wheel: finished with status 'done'
00:39:14 Preparing metadata (pyproject.toml): started
00:39:15 Preparing metadata (pyproject.toml): finished with status 'done'
00:39:15 Building wheels for collected packages: omero-scripts
00:39:15 Building wheel for omero-scripts (pyproject.toml): started
00:39:15 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:39:15 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137630 sha256=2501f6f6aac4b456dc9bbab078083c95cf02c778d92e99c959e1e6f77b54ee0d
00:39:15 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:39:15 Successfully built omero-scripts
00:39:15 Installing collected packages: omero-scripts
00:39:16 Successfully installed omero-scripts-5.10.1.dev0
00:39:16
00:39:16 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:39:16 [notice] To update, run: pip install --upgrade pip
00:39:16 + for x in *.tar.gz
00:39:16 + pip install -U omero_web-5.33.4.dev0.tar.gz
00:39:17 Processing ./omero_web-5.33.4.dev0.tar.gz
00:39:17 Installing build dependencies: started
00:39:18 Installing build dependencies: finished with status 'done'
00:39:18 Getting requirements to build wheel: started
00:39:18 Getting requirements to build wheel: finished with status 'done'
00:39:18 Preparing metadata (pyproject.toml): started
00:39:19 Preparing metadata (pyproject.toml): finished with status 'done'
00:39:19 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (5.23.1.dev0)
00:39:19 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.33.4.dev0)
00:39:19 Using cached concurrent_log_handler-0.9.31-py3-none-any.whl.metadata (30 kB)
00:39:19 Collecting Django<5.3,>=5.2.9 (from omero-web==5.33.4.dev0)
00:39:19 Using cached django-5.2.19-py3-none-any.whl.metadata (4.1 kB)
00:39:19 Collecting django-pipeline>=4.1.0 (from omero-web==5.33.4.dev0)
00:39:19 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:39:19 Collecting django-cors-headers==3.7.0 (from omero-web==5.33.4.dev0)
00:39:19 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:39:19 Collecting whitenoise>=5.3.0 (from omero-web==5.33.4.dev0)
00:39:19 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:39:20 Collecting gunicorn>=19.3 (from omero-web==5.33.4.dev0)
00:39:20 Using cached gunicorn-27.0.1-py3-none-any.whl.metadata (5.6 kB)
00:39:20 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (0.9.2.dev0)
00:39:20 Requirement already satisfied: Pillow in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (13.0.0)
00:39:20 Requirement already satisfied: pytz in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (2026.6)
00:39:20 Requirement already satisfied: portalocker in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (4.4.2)
00:39:20 Requirement already satisfied: packaging in ./.venv3/lib/python3.11/site-packages (from omero-web==5.33.4.dev0) (26.3)
00:39:20 Collecting importlib-resources (from omero-web==5.33.4.dev0)
00:39:20 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
00:39:20 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.33.4.dev0)
00:39:20 Using cached asgiref-3.13.0-py3-none-any.whl.metadata (12 kB)
00:39:20 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.33.4.dev0)
00:39:20 Using cached sqlparse-0.6.1-py3-none-any.whl.metadata (6.9 kB)
00:39:20 Requirement already satisfied: setuptools in ./.venv3/lib/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.33.4.dev0) (79.0.1)
00:39:20 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.33.4.dev0)
00:39:20 Using cached wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
00:39:20 Requirement already satisfied: appdirs in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (1.4.4)
00:39:20 Requirement already satisfied: future in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (1.0.0)
00:39:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.4.6)
00:39:20 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (6.0.3)
00:39:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.6.5)
00:39:20 Requirement already satisfied: requests in ./.venv3/lib/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.34.2)
00:39:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.5.2)
00:39:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (3.20)
00:39:20 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (2.8.0)
00:39:20 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.33.4.dev0) (2026.10.23)
00:39:20 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:39:20 Using cached django-5.2.19-py3-none-any.whl (8.3 MB)
00:39:20 Using cached asgiref-3.13.0-py3-none-any.whl (27 kB)
00:39:20 Using cached concurrent_log_handler-0.9.31-py3-none-any.whl (36 kB)
00:39:21 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:39:21 Using cached gunicorn-27.0.1-py3-none-any.whl (263 kB)
00:39:21 Using cached sqlparse-0.6.1-py3-none-any.whl (51 kB)
00:39:21 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:39:21 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
00:39:21 Using cached wheel-0.48.0-py3-none-any.whl (33 kB)
00:39:21 Building wheels for collected packages: omero-web
00:39:21 Building wheel for omero-web (pyproject.toml): started
00:39:22 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:39:22 Created wheel for omero-web: filename=omero_web-5.33.4.dev0-py3-none-any.whl size=2820611 sha256=58274b2065bf628785cfae2b41955c4e39cdf74ea4bfdc27eb43244d8f5de738
00:39:22 Stored in directory: /home/omero/.cache/pip/wheels/77/9e/f5/52a9e67ca1a8b7bccc74bb6768e254cc090a07d1bf56bba985
00:39:22 Successfully built omero-web
00:39:22 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:40:09
00:40:09 Successfully installed Django-5.2.19 asgiref-3.13.0 concurrent-log-handler-0.9.31 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-27.0.1 importlib-resources-7.1.0 omero-web-5.33.4.dev0 sqlparse-0.6.1 wheel-0.48.0 whitenoise-6.12.0
00:40:09
00:40:09 [notice] A new release of pip is available: 26.2.2 -> 26.3
00:40:09 [notice] To update, run: pip install --upgrade pip
00:40:09 + wget https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
00:40:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:40:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:40:10 --2026-11-14 00:40:10-- https://raw.githubusercontent.com/will-moore/figure/refs/heads/master/ome_figure/Figure_To_Pdf.py
00:40:10 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.109.133, 185.199.110.133, ...
00:40:10 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
00:40:10 HTTP request sent, awaiting response... 200 OK
00:40:10 Length: 133725 (131K) [text/plain]
00:40:10 Saving to: ‘Figure_To_Pdf.py’
00:40:10
00:40:10 0K .......... .......... .......... .......... .......... 38% 2.76M 0s
00:40:10 50K .......... .......... .......... .......... .......... 76% 10.4M 0s
00:40:10 100K .......... .......... .......... 100% 3.34M=0.03s
00:40:10
00:40:10 2026-11-14 00:40:10 (4.07 MB/s) - ‘Figure_To_Pdf.py’ saved [133725/133725]
00:40:10
00:40:10 + chmod 755 Figure_To_Pdf.py
00:40:10 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:40:10 + omero config set omero.db.name OMERO-server
00:40:16 + omero config set omero.db.host pg
00:40:20 + omero config set omero.db.user postgres
00:40:25 + omero config set omero.data.dir /home/omero/omero-server-data
00:40:29 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:40:33 + omero config set omero.db.poolsize 25
00:40:37 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:40:41 + omero config set omero.security.trustStorePassword changeit
00:40:45 + omero config set omero.mail.config true
00:40:49 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:40:54 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:40:58 + omero certificates
00:41:01 OpenSSL 3.5.8 25 Aug 2026 (Library: OpenSSL 3.5.8 25 Aug 2026)
00:41:02 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:41:02 + '[' false = true ']'
00:41:02 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:41:02 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:41:02 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:41:02 2026-11-14 00:41:02,626 [ omego.db] DEBUG dbcommand => upgrade
00:41:02 2026-11-14 00:41:02,627 [ omego.db] DEBUG dbhost => localhost
00:41:02 2026-11-14 00:41:02,627 [ omego.db] DEBUG dbname => OMERO-server
00:41:02 2026-11-14 00:41:02,627 [ omego.db] DEBUG dbpass => omero
00:41:02 2026-11-14 00:41:02,627 [ omego.db] DEBUG dbuser => omero
00:41:02 2026-11-14 00:41:02,627 [ omego.db] DEBUG rootpass => omero
00:41:02 2026-11-14 00:41:02,627 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:41:02 2026-11-14 00:41:02,628 [omego.extern] INFO Executing : omero version
00:41:06 OMERO.py version:
00:41:06 OMERO.server version:
00:41:06 5.6.3-689-1461586dc7-ice36-b128
00:41:06 5.23.1.dev0
00:41:06 2026-11-14 00:41:06,822 [omego.extern] INFO Completed [4.194 s]
00:41:06 2026-11-14 00:41:06,822 [omego.extern] DEBUG Using omero CLI from omero
00:41:06 2026-11-14 00:41:06,822 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:41:06 2026-11-14 00:41:06,822 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:41:06 2026-11-14 00:41:06,822 [omego.extern] INFO Executing : omero config get --show-password
00:41:10 2026-11-14 00:41:10,938 [omego.extern] INFO Completed [4.115 s]
00:41:10 2026-11-14 00:41:10,938 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:41:10 2026-11-14 00:41:10,938 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:41:11 2026-11-14 00:41:11,130 [omego.extern] INFO Completed [0.192 s]
00:41:11 2026-11-14 00:41:11,131 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.15\n'
00:41:11 2026-11-14 00:41:11,131 [ omego.db] INFO psql version: psql (PostgreSQL) 16.15
00:41:11
00:41:11 2026-11-14 00:41:11,131 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:41:11 2026-11-14 00:41:11,131 [omego.extern] INFO Executing : omero config get --show-password
00:41:15 2026-11-14 00:41:15,225 [omego.extern] INFO Completed [4.094 s]
00:41:15 2026-11-14 00:41:15,225 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:41:15 2026-11-14 00:41:15,225 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:41:15 2026-11-14 00:41:15,259 [omego.extern] INFO Completed [0.035 s]
00:41:15 2026-11-14 00:41:15,259 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.13") at port "5432".\n'
00:41:15 2026-11-14 00:41:15,260 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:41:15 2026-11-14 00:41:15,260 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:41:15 2026-11-14 00:41:15,260 [omego.extern] INFO Executing : omero config get --show-password
00:41:19 2026-11-14 00:41:19,528 [omego.extern] INFO Completed [4.268 s]
00:41:19 2026-11-14 00:41:19,528 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:41:19 2026-11-14 00:41:19,528 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:41:19 2026-11-14 00:41:19,604 [omego.extern] INFO Completed [0.076 s]
00:41:19 2026-11-14 00:41:19,604 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:41:19 2026-11-14 00:41:19,604 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:41:19 2026-11-14 00:41:19,644 [ omego.db] INFO Database is already at OMERO5.4__0
00:41:19 + export LANG=en_US.UTF-8
00:41:19 + LANG=en_US.UTF-8
00:41:19 + export LANGUAGE=en_US:en
00:41:19 + LANGUAGE=en_US:en
00:41:19 + export LC_ALL=en_US.UTF-8
00:41:19 + LC_ALL=en_US.UTF-8
00:41:19 + BUILD_ID=DONT_KILL_ME
00:41:19 + omero admin start
00:41:30 No descriptor given. Using etc/grid/default.xml
00:41:41 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:41:41 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:41:41 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:41:41 Waiting on startup. Use CTRL-C to exit
00:41:42 + omero admin waitup
00:41:47 Waiting on startup. Use CTRL-C to exit
00:41:47 + omero admin diagnostics
00:41:51
00:41:51 ================================================================================
00:41:51 OMERO Diagnostics (admin)
00:41:51 ================================================================================
00:41:51
00:41:51 Commands: java -version 21.0.13 (/usr/bin/java)
00:41:51 Commands: python -V 3.11.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:41:51 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:41:51 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:41:51 Commands: psql --version 16.15 (/usr/bin/psql)
00:41:51 Commands: openssl version 3.5.825 (/usr/bin/openssl)
00:41:51
00:41:51 Component: OMERO.py 5.23.1.dev0
00:41:51 Component: OMERO.server 5.6.3-689-1461586dc7-ice36-b128
00:41:51
00:41:51 Server: icegridnode running
00:41:51 Server: Blitz-0 active (pid = 485460, enabled)
00:41:51 Server: Indexer-0 active (pid = 485479, enabled)
00:41:51 Server: OMERO.Glacier2 active (pid = 485484, enabled)
00:41:51 Server: OMERO.IceStorm active (pid = 485514, enabled)
00:41:51 Server: Processor-0 activating (enabled)
00:41:51 Server: Tables-0 activating (enabled)
00:41:51
00:41:51 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:41:51 Log files: Blitz-0.log 22.8 KB errors=0 warnings=1
00:41:51 Log files: DropBox.log n/a
00:41:51 Log files: FileServer.log n/a
00:41:51 Log files: Indexer-0.log 2.6 KB
00:41:51 Log files: MonitorServer.log n/a
00:41:51 Log files: Processor-0.log 592 B
00:41:51 Log files: Tables-0.log 841 B
00:41:51 Log files: TestDropBox.log n/a
00:41:51 Log files: master.err empty
00:41:51 Log files: master.out 30.7 KB
00:41:51 Log files: Total size 0.06 MB
00:41:51
00:41:51
00:41:51 Environment:OMERO_HOME=(unset)
00:41:51 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:41:51 Environment:OMERO_NODE=(unset)
00:41:51 Environment:OMERO_MASTER=(unset)
00:41:51 Environment:OMERO_USERDIR=(unset)
00:41:51 Environment:OMERO_TMPDIR=(unset)
00:41:51 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:41:51 Environment:PYTHONPATH=(unset)
00:41:51 Environment:ICE_HOME=/opt/ice-3.6.5
00:41:51 Environment:LD_LIBRARY_PATH=(unset)
00:41:51 Environment:DYLD_LIBRARY_PATH=(unset)
00:41:51
00:41:51 OMERO SSL port:4064
00:41:51 OMERO TCP port:4063
00:41:51 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:41:51 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:41:51
00:41:51 JVM settings: Blitz-${index} -Xmx5007m
00:41:51 JVM settings: Indexer-${index} -Xmx3338m
00:41:51 JVM settings: PixelData-${index} -Xmx5007m
00:41:51 JVM settings: Repository-${index} -Xmx3338m
00:41:52
00:41:52 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:41:52 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:41:52 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
00:41:52 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
00:41:52 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
00:41:52 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
00:41:52 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
00:41:52 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
00:41:52 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
00:41:52 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
00:41:52 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:41:52 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
00:41:52 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:41:52 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
00:41:52 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:41:52 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
00:41:52 Jar: lib/server/omero-zarr-pixel-buffer.jar OMERO Zarr Pixel Buffer 0.8.0-SNAPSHOT a3c4020bfdce6822d426f2857716ff2964c465aa
00:41:52 + deactivate
00:41:52 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:41:52 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:41:52 + export PATH
00:41:52 + unset _OLD_VIRTUAL_PATH
00:41:52 + '[' -n '' ']'
00:41:52 + hash -r
00:41:52 + '[' -n '' ']'
00:41:52 + unset VIRTUAL_ENV
00:41:52 + unset VIRTUAL_ENV_PROMPT
00:41:52 + '[' '!' '' = nondestructive ']'
00:41:52 + unset -f deactivate
00:41:52 Finished: SUCCESS
