00:45:16 Started by upstream project "Trigger" build number 81
00:45:16 originally caused by:
00:45:16 Started by timer
00:45:16 Running as SYSTEM
00:45:16 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:16 [OMERO-server] $ /bin/bash -xe /tmp/jenkins568071648362714184.sh
00:45:16 + source /home/settings.env
00:45:16 ++ OMERO_DB_HOST=pg
00:45:16 ++ OMERO_DB_USER=postgres
00:45:16 ++ OMERO_DB_PASS=
00:45:16 ++ OMERO_ROOT_PASS=omero
00:45:16 ++ OMERO_DATA_DIR=/OMERO
00:45:16 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:16 + OMERO_DB_NAME=OMERO-server
00:45:16 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:16 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:16 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:16 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:16 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:16 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:16 ++ deactivate nondestructive
00:45:16 ++ '[' -n '' ']'
00:45:16 ++ '[' -n '' ']'
00:45:16 ++ hash -r
00:45:16 ++ '[' -n '' ']'
00:45:16 ++ unset VIRTUAL_ENV
00:45:16 ++ unset VIRTUAL_ENV_PROMPT
00:45:16 ++ '[' '!' nondestructive = nondestructive ']'
00:45:16 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:16 ++ export VIRTUAL_ENV
00:45:16 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:16 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:16 ++ export PATH
00:45:16 ++ '[' -n '' ']'
00:45:16 ++ '[' -z '' ']'
00:45:16 ++ _OLD_VIRTUAL_PS1=
00:45:16 ++ PS1='(.venv3) '
00:45:16 ++ export PS1
00:45:16 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:16 ++ export VIRTUAL_ENV_PROMPT
00:45:16 ++ hash -r
00:45:16 + omero admin stop
00:45:18 Waiting on shutdown. Use CTRL-C to exit
00:45:18 .+ sleep 5
00:45:33 + deactivate
00:45:33 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:33 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:33 + export PATH
00:45:33 + unset _OLD_VIRTUAL_PATH
00:45:33 + '[' -n '' ']'
00:45:33 + hash -r
00:45:33 + '[' -n '' ']'
00:45:33 + unset VIRTUAL_ENV
00:45:33 + unset VIRTUAL_ENV_PROMPT
00:45:33 + '[' '!' '' = nondestructive ']'
00:45:33 + unset -f deactivate
00:45:33 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:34 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:37 + '[' false = true ']'
00:45:37 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:37 Skipping PURGE_DATA:CleanDbAndRepo
00:45:37 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:39 Copied 1 artifact from "OMERO-build" build number 58
00:45:39 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 54
00:45:39 Copied 2 artifacts from "OMERO-build-build" build number 58
00:45:39 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 52
00:45:39 [OMERO-server] $ /bin/bash -xe /tmp/jenkins3109756595966041050.sh
00:45:39 + source /home/settings.env
00:45:39 ++ OMERO_DB_HOST=pg
00:45:39 ++ OMERO_DB_USER=postgres
00:45:39 ++ OMERO_DB_PASS=
00:45:39 ++ OMERO_ROOT_PASS=omero
00:45:39 ++ OMERO_DATA_DIR=/OMERO
00:45:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:39 + OMERO_DB_NAME=OMERO-server
00:45:39 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:39 + mkdir -p /home/omero/omero-server-data
00:45:39 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:39 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:39 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:39 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:39 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:39 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:39 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:39 ++ ls OMERO.server-5.6.3-594-07d100ce80-ice36-b58.zip
00:45:39 + ZIP=OMERO.server-5.6.3-594-07d100ce80-ice36-b58.zip
00:45:39 + '[' '!' -z '' ']'
00:45:39 + DIST=OMERO.server-5.6.3-594-07d100ce80-ice36-b58
00:45:39 + unzip OMERO.server-5.6.3-594-07d100ce80-ice36-b58.zip
00:45:39 Archive: OMERO.server-5.6.3-594-07d100ce80-ice36-b58.zip
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/blitz/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/grid/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/profiles/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/error/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/grid/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/luts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/luts/janelia/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/luts/matplotlib/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/luts/ncsa_paledit/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/luts/seaborn/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/luts/wcif/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/omero/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/omero/analysis_scripts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/omero/annotation_scripts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/omero/export_scripts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/omero/figure_scripts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/omero/import_scripts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/scripts/omero/util_scripts/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/server/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/share/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/share/licenses/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/misc/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__1/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__10/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__11/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__2/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__3/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__4/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__5/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__6/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__7/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__8/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3A__9/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3__4/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3__5/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3__6/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO3__7/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO4.1__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO4.2__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO4.2__0/t/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO4.3__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO4.4__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO4__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.0__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.1__1/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.2__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.3__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4DEV__1/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4DEV__2/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4DEV__3/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4__0/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/var/
00:45:39 creating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/var/tmp/
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/LICENSE.txt
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/backup.cfg
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/blitz/mail-senders.example
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/blitz/mail-server.example
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/build.properties
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/env.bat
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/env.sh
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/hibernate.properties
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/ice.config
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/logback-cli.xml
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/logback-indexing-cli.xml
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/logback-indexing.xml
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/logback.xml
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/mime.types
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/node1.cfg
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/node2.cfg
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/omero.properties
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/profiles/psql
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/rollover.cfg
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/Windows.cfg
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/error/maintainance.html
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/grid/README
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/grid/default.xml
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/grid/templates.xml
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/grid/windefault.xml
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/ice.config
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/internal.cfg
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/master.cfg
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/templates/robot.template
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/etc/testdropbox.config
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/history.rst
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/OMEZarrReader.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/accessors-smart.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/activation.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/aggdesigner-algorithm.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/aircompressor.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/antlr.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/aopalliance.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/apiguardian-api.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/asm.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/avatica-core.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/avatica-metrics.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/aws-java-sdk-core.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/aws-java-sdk-kms.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/aws-java-sdk-s3.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/base.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-anim.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-awt-util.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-bridge.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-codec.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-constants.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-css.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-dom.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-ext.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-gvt.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-i18n.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-parser.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-script.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-shared-resources.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-svg-dom.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-svggen.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-transcoder.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-util.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/batik-xml.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/btm.jar
00:45:39 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/calcite-core.jar
00:45:40 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/calcite-linq4j.jar
00:45:40 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/cdm-core.jar
00:45:40 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/checker-qual.jar
00:45:40 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/commons-beanutils.jar
00:45:40 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/commons-codec.jar
00:45:40 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/lib/client/commons-collections.jar
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00:45:42 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:42 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:42 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:42 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4__0/psql-header.sql
00:45:42 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4__0/schema.sql
00:45:42 inflating: OMERO.server-5.6.3-594-07d100ce80-ice36-b58/sql/psql/OMERO5.4__0/views.sql
00:45:42 + rm -f OMERO.server-5.6.3-594-07d100ce80-ice36-b58.zip
00:45:42 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-07d100ce80-ice36-b58 /home/omero/workspace/OMERO-server/OMERO.server
00:45:42 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:45:42 + awsSdkVersion=2.34.6
00:45:42 + jacksonVersion=2.20.0
00:45:42 + logbackVersion=1.3.14
00:45:42 + zarrJavaVersion=0.0.10
00:45:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:42 --2026-02-19 00:45:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:42 HTTP request sent, awaiting response... 200 OK
00:45:42 Length: 4083366 (3.9M) [application/java-archive]
00:45:42 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:45:42
00:45:42 0K .......... .......... .......... .......... .......... 1% 31.4M 0s
00:45:42 50K .......... .......... .......... .......... .......... 2% 3.53M 1s
00:45:42 100K .......... .......... .......... .......... .......... 3% 3.93M 1s
00:45:42 150K .......... .......... .......... .......... .......... 5% 49.5M 1s
00:45:42 200K .......... .......... .......... .......... .......... 6% 109M 0s
00:45:42 250K .......... .......... .......... .......... .......... 7% 58.4M 0s
00:45:42 300K .......... .......... .......... .......... .......... 8% 156M 0s
00:45:42 350K .......... .......... .......... .......... .......... 10% 4.47M 0s
00:45:42 400K .......... .......... .......... .......... .......... 11% 33.0M 0s
00:45:42 450K .......... .......... .......... .......... .......... 12% 44.8M 0s
00:45:42 500K .......... .......... .......... .......... .......... 13% 275M 0s
00:45:42 550K .......... .......... .......... .......... .......... 15% 88.5M 0s
00:45:42 600K .......... .......... .......... .......... .......... 16% 4.77M 0s
00:45:42 650K .......... .......... .......... .......... .......... 17% 18.8M 0s
00:45:42 700K .......... .......... .......... .......... .......... 18% 179M 0s
00:45:42 750K .......... .......... .......... .......... .......... 20% 108M 0s
00:45:42 800K .......... .......... .......... .......... .......... 21% 71.2M 0s
00:45:42 850K .......... .......... .......... .......... .......... 22% 4.91M 0s
00:45:42 900K .......... .......... .......... .......... .......... 23% 17.4M 0s
00:45:42 950K .......... .......... .......... .......... .......... 25% 289M 0s
00:45:42 1000K .......... .......... .......... .......... .......... 26% 118M 0s
00:45:42 1050K .......... .......... .......... .......... .......... 27% 88.9M 0s
00:45:42 1100K .......... .......... .......... .......... .......... 28% 58.8M 0s
00:45:42 1150K .......... .......... .......... .......... .......... 30% 5.36M 0s
00:45:42 1200K .......... .......... .......... .......... .......... 31% 17.2M 0s
00:45:42 1250K .......... .......... .......... .......... .......... 32% 60.0M 0s
00:45:42 1300K .......... .......... .......... .......... .......... 33% 61.6M 0s
00:45:42 1350K .......... .......... .......... .......... .......... 35% 102M 0s
00:45:42 1400K .......... .......... .......... .......... .......... 36% 5.40M 0s
00:45:42 1450K .......... .......... .......... .......... .......... 37% 11.1M 0s
00:45:42 1500K .......... .......... .......... .......... .......... 38% 29.4M 0s
00:45:42 1550K .......... .......... .......... .......... .......... 40% 17.4M 0s
00:45:42 1600K .......... .......... .......... .......... .......... 41% 13.4M 0s
00:45:42 1650K .......... .......... .......... .......... .......... 42% 19.7M 0s
00:45:42 1700K .......... .......... .......... .......... .......... 43% 16.0M 0s
00:45:42 1750K .......... .......... .......... .......... .......... 45% 24.3M 0s
00:45:42 1800K .......... .......... .......... .......... .......... 46% 15.5M 0s
00:45:42 1850K .......... .......... .......... .......... .......... 47% 17.3M 0s
00:45:42 1900K .......... .......... .......... .......... .......... 48% 25.0M 0s
00:45:42 1950K .......... .......... .......... .......... .......... 50% 15.8M 0s
00:45:42 2000K .......... .......... .......... .......... .......... 51% 13.6M 0s
00:45:42 2050K .......... .......... .......... .......... .......... 52% 19.5M 0s
00:45:42 2100K .......... .......... .......... .......... .......... 53% 17.7M 0s
00:45:42 2150K .......... .......... .......... .......... .......... 55% 20.4M 0s
00:45:42 2200K .......... .......... .......... .......... .......... 56% 15.2M 0s
00:45:42 2250K .......... .......... .......... .......... .......... 57% 18.3M 0s
00:45:42 2300K .......... .......... .......... .......... .......... 58% 21.1M 0s
00:45:42 2350K .......... .......... .......... .......... .......... 60% 17.4M 0s
00:45:42 2400K .......... .......... .......... .......... .......... 61% 17.6M 0s
00:45:42 2450K .......... .......... .......... .......... .......... 62% 14.2M 0s
00:45:42 2500K .......... .......... .......... .......... .......... 63% 21.5M 0s
00:45:42 2550K .......... .......... .......... .......... .......... 65% 15.9M 0s
00:45:42 2600K .......... .......... .......... .......... .......... 66% 25.8M 0s
00:45:42 2650K .......... .......... .......... .......... .......... 67% 15.1M 0s
00:45:42 2700K .......... .......... .......... .......... .......... 68% 15.7M 0s
00:45:42 2750K .......... .......... .......... .......... .......... 70% 24.2M 0s
00:45:42 2800K .......... .......... .......... .......... .......... 71% 14.6M 0s
00:45:42 2850K .......... .......... .......... .......... .......... 72% 26.6M 0s
00:45:42 2900K .......... .......... .......... .......... .......... 73% 12.8M 0s
00:45:42 2950K .......... .......... .......... .......... .......... 75% 19.7M 0s
00:45:42 3000K .......... .......... .......... .......... .......... 76% 23.0M 0s
00:45:42 3050K .......... .......... .......... .......... .......... 77% 15.3M 0s
00:45:42 3100K .......... .......... .......... .......... .......... 78% 16.8M 0s
00:45:42 3150K .......... .......... .......... .......... .......... 80% 16.2M 0s
00:45:42 3200K .......... .......... .......... .......... .......... 81% 14.3M 0s
00:45:42 3250K .......... .......... .......... .......... .......... 82% 35.3M 0s
00:45:42 3300K .......... .......... .......... .......... .......... 84% 17.3M 0s
00:45:42 3350K .......... .......... .......... .......... .......... 85% 16.4M 0s
00:45:42 3400K .......... .......... .......... .......... .......... 86% 15.9M 0s
00:45:42 3450K .......... .......... .......... .......... .......... 87% 28.4M 0s
00:45:42 3500K .......... .......... .......... .......... .......... 89% 15.6M 0s
00:45:42 3550K .......... .......... .......... .......... .......... 90% 18.7M 0s
00:45:42 3600K .......... .......... .......... .......... .......... 91% 16.7M 0s
00:45:42 3650K .......... .......... .......... .......... .......... 92% 14.1M 0s
00:45:42 3700K .......... .......... .......... .......... .......... 94% 31.2M 0s
00:45:42 3750K .......... .......... .......... .......... .......... 95% 14.3M 0s
00:45:42 3800K .......... .......... .......... .......... .......... 96% 18.4M 0s
00:45:42 3850K .......... .......... .......... .......... .......... 97% 25.4M 0s
00:45:42 3900K .......... .......... .......... .......... .......... 99% 28.7M 0s
00:45:42 3950K .......... .......... .......... ....... 100% 11.5M=0.2s
00:45:42
00:45:42 2026-02-19 00:45:42 (16.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:45:42
00:45:42 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:42 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:42 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:42 --2026-02-19 00:45:42-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:42 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:42 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:43 Length: 234962 (229K) [application/java-archive]
00:45:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:45:43
00:45:43 0K .......... .......... .......... .......... .......... 21% 33.6M 0s
00:45:43 50K .......... .......... .......... .......... .......... 43% 3.59M 0s
00:45:43 100K .......... .......... .......... .......... .......... 65% 3.94M 0s
00:45:43 150K .......... .......... .......... .......... .......... 87% 35.1M 0s
00:45:43 200K .......... .......... ......... 100% 259M=0.03s
00:45:43
00:45:43 2026-02-19 00:45:43 (7.75 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:45:43
00:45:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:43 --2026-02-19 00:45:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:43 Length: 192161 (188K) [application/java-archive]
00:45:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:45:43
00:45:43 0K .......... .......... .......... .......... .......... 26% 3.52M 0s
00:45:43 50K .......... .......... .......... .......... .......... 53% 8.47M 0s
00:45:43 100K .......... .......... .......... .......... .......... 79% 4.45M 0s
00:45:43 150K .......... .......... .......... ....... 100% 12.8M=0.03s
00:45:43
00:45:43 2026-02-19 00:45:43 (5.47 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:45:43
00:45:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:43 --2026-02-19 00:45:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:43 Length: 1037104 (1013K) [application/java-archive]
00:45:43 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:45:43
00:45:43 0K .......... .......... .......... .......... .......... 4% 35.5M 0s
00:45:43 50K .......... .......... .......... .......... .......... 9% 3.59M 0s
00:45:43 100K .......... .......... .......... .......... .......... 14% 3.96M 0s
00:45:43 150K .......... .......... .......... .......... .......... 19% 36.4M 0s
00:45:43 200K .......... .......... .......... .......... .......... 24% 109M 0s
00:45:43 250K .......... .......... .......... .......... .......... 29% 55.7M 0s
00:45:43 300K .......... .......... .......... .......... .......... 34% 362M 0s
00:45:43 350K .......... .......... .......... .......... .......... 39% 4.43M 0s
00:45:43 400K .......... .......... .......... .......... .......... 44% 35.6M 0s
00:45:43 450K .......... .......... .......... .......... .......... 49% 132M 0s
00:45:43 500K .......... .......... .......... .......... .......... 54% 63.4M 0s
00:45:43 550K .......... .......... .......... .......... .......... 59% 139M 0s
00:45:43 600K .......... .......... .......... .......... .......... 64% 4.06M 0s
00:45:43 650K .......... .......... .......... .......... .......... 69% 126M 0s
00:45:43 700K .......... .......... .......... .......... .......... 74% 54.6M 0s
00:45:43 750K .......... .......... .......... .......... .......... 78% 74.8M 0s
00:45:43 800K .......... .......... .......... .......... .......... 83% 202M 0s
00:45:43 850K .......... .......... .......... .......... .......... 88% 4.14M 0s
00:45:43 900K .......... .......... .......... .......... .......... 93% 287M 0s
00:45:43 950K .......... .......... .......... .......... .......... 98% 50.1M 0s
00:45:43 1000K .......... .. 100% 289M=0.07s
00:45:43
00:45:43 2026-02-19 00:45:43 (13.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:45:43
00:45:43 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:43 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:43 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:43 --2026-02-19 00:45:43-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:43 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:43 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:43 HTTP request sent, awaiting response... 200 OK
00:45:44 Length: 33040 (32K) [application/java-archive]
00:45:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:45:44
00:45:44 0K .......... .......... .......... .. 100% 18.2M=0.002s
00:45:44
00:45:44 2026-02-19 00:45:44 (18.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:45:44
00:45:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:44 --2026-02-19 00:45:44-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:44 HTTP request sent, awaiting response... 200 OK
00:45:44 Length: 13758 (13K) [application/java-archive]
00:45:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:45:44
00:45:44 0K .......... ... 100% 70.3M=0s
00:45:44
00:45:44 2026-02-19 00:45:44 (70.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:45:44
00:45:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:44 --2026-02-19 00:45:44-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:44 HTTP request sent, awaiting response... 200 OK
00:45:44 Length: 962220 (940K) [application/java-archive]
00:45:44 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:45:44
00:45:44 0K .......... .......... .......... .......... .......... 5% 34.3M 0s
00:45:44 50K .......... .......... .......... .......... .......... 10% 3.55M 0s
00:45:44 100K .......... .......... .......... .......... .......... 15% 3.97M 0s
00:45:44 150K .......... .......... .......... .......... .......... 21% 29.5M 0s
00:45:44 200K .......... .......... .......... .......... .......... 26% 70.2M 0s
00:45:44 250K .......... .......... .......... .......... .......... 31% 72.5M 0s
00:45:44 300K .......... .......... .......... .......... .......... 37% 4.67M 0s
00:45:44 350K .......... .......... .......... .......... .......... 42% 26.7M 0s
00:45:44 400K .......... .......... .......... .......... .......... 47% 236M 0s
00:45:44 450K .......... .......... .......... .......... .......... 53% 78.3M 0s
00:45:44 500K .......... .......... .......... .......... .......... 58% 75.8M 0s
00:45:44 550K .......... .......... .......... .......... .......... 63% 346M 0s
00:45:44 600K .......... .......... .......... .......... .......... 69% 4.26M 0s
00:45:44 650K .......... .......... .......... .......... .......... 74% 49.7M 0s
00:45:44 700K .......... .......... .......... .......... .......... 79% 91.6M 0s
00:45:44 750K .......... .......... .......... .......... .......... 85% 77.3M 0s
00:45:44 800K .......... .......... .......... .......... .......... 90% 67.1M 0s
00:45:44 850K .......... .......... .......... .......... .......... 95% 4.18M 0s
00:45:44 900K .......... .......... .......... ......... 100% 84.2M=0.07s
00:45:44
00:45:44 2026-02-19 00:45:44 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:45:44
00:45:44 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:44 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:44 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:44 --2026-02-19 00:45:44-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:44 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:44 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:44 HTTP request sent, awaiting response... 200 OK
00:45:45 Length: 30963 (30K) [application/java-archive]
00:45:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:45:45
00:45:45 0K .......... .......... .......... 100% 3.29M=0.009s
00:45:45
00:45:45 2026-02-19 00:45:45 (3.29 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:45:45
00:45:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:45 --2026-02-19 00:45:45-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:45 HTTP request sent, awaiting response... 200 OK
00:45:45 Length: 241618 (236K) [application/java-archive]
00:45:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:45:45
00:45:45 0K .......... .......... .......... .......... .......... 21% 35.6M 0s
00:45:45 50K .......... .......... .......... .......... .......... 42% 3.59M 0s
00:45:45 100K .......... .......... .......... .......... .......... 63% 4.03M 0s
00:45:45 150K .......... .......... .......... .......... .......... 84% 34.7M 0s
00:45:45 200K .......... .......... .......... ..... 100% 159M=0.03s
00:45:45
00:45:45 2026-02-19 00:45:45 (8.02 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:45:45
00:45:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:45 --2026-02-19 00:45:45-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:45 HTTP request sent, awaiting response... 200 OK
00:45:45 Length: 91685 (90K) [application/java-archive]
00:45:45 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:45:45
00:45:45 0K .......... .......... .......... .......... .......... 55% 15.9M 0s
00:45:45 50K .......... .......... .......... ......... 100% 3.27M=0.01s
00:45:45
00:45:45 2026-02-19 00:45:45 (5.88 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:45:45
00:45:45 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:45 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:45 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:45 --2026-02-19 00:45:45-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:45 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:45 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:45 HTTP request sent, awaiting response... 200 OK
00:45:46 Length: 66309 (65K) [application/java-archive]
00:45:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:45:46
00:45:46 0K .......... .......... .......... .......... .......... 77% 33.5M 0s
00:45:46 50K .......... .... 100% 130M=0.002s
00:45:46
00:45:46 2026-02-19 00:45:46 (40.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:45:46
00:45:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:46 --2026-02-19 00:45:46-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:46 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:46 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:46 HTTP request sent, awaiting response... 200 OK
00:45:46 Length: 593063 (579K) [application/java-archive]
00:45:46 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:45:46
00:45:46 0K .......... .......... .......... .......... .......... 8% 17.4M 0s
00:45:46 50K .......... .......... .......... .......... .......... 17% 3.80M 0s
00:45:46 100K .......... .......... .......... .......... .......... 25% 13.9M 0s
00:45:46 150K .......... .......... .......... .......... .......... 34% 4.87M 0s
00:45:46 200K .......... .......... .......... .......... .......... 43% 13.1M 0s
00:45:46 250K .......... .......... .......... .......... .......... 51% 17.3M 0s
00:45:46 300K .......... .......... .......... .......... .......... 60% 16.5M 0s
00:45:46 350K .......... .......... .......... .......... .......... 69% 17.6M 0s
00:45:46 400K .......... .......... .......... .......... .......... 77% 22.3M 0s
00:45:46 450K .......... .......... .......... .......... .......... 86% 17.5M 0s
00:45:46 500K .......... .......... .......... .......... .......... 94% 17.5M 0s
00:45:46 550K .......... .......... ......... 100% 24.8M=0.05s
00:45:46
00:45:46 2026-02-19 00:45:46 (11.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:45:46
00:45:46 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:46 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:46 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:46 --2026-02-19 00:45:46-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:46 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:46 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:47 HTTP request sent, awaiting response... 200 OK
00:45:47 Length: 1688471 (1.6M) [application/java-archive]
00:45:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:45:47
00:45:47 0K .......... .......... .......... .......... .......... 3% 36.4M 0s
00:45:47 50K .......... .......... .......... .......... .......... 6% 3.57M 0s
00:45:47 100K .......... .......... .......... .......... .......... 9% 67.4M 0s
00:45:47 150K .......... .......... .......... .......... .......... 12% 3.81M 0s
00:45:47 200K .......... .......... .......... .......... .......... 15% 75.3M 0s
00:45:47 250K .......... .......... .......... .......... .......... 18% 64.2M 0s
00:45:47 300K .......... .......... .......... .......... .......... 21% 330M 0s
00:45:47 350K .......... .......... .......... .......... .......... 24% 57.1M 0s
00:45:47 400K .......... .......... .......... .......... .......... 27% 4.15M 0s
00:45:47 450K .......... .......... .......... .......... .......... 30% 304M 0s
00:45:47 500K .......... .......... .......... .......... .......... 33% 54.4M 0s
00:45:47 550K .......... .......... .......... .......... .......... 36% 61.5M 0s
00:45:47 600K .......... .......... .......... .......... .......... 39% 104M 0s
00:45:47 650K .......... .......... .......... .......... .......... 42% 4.28M 0s
00:45:47 700K .......... .......... .......... .......... .......... 45% 55.9M 0s
00:45:47 750K .......... .......... .......... .......... .......... 48% 312M 0s
00:45:47 800K .......... .......... .......... .......... .......... 51% 66.5M 0s
00:45:47 850K .......... .......... .......... .......... .......... 54% 69.4M 0s
00:45:47 900K .......... .......... .......... .......... .......... 57% 4.35M 0s
00:45:47 950K .......... .......... .......... .......... .......... 60% 124M 0s
00:45:47 1000K .......... .......... .......... .......... .......... 63% 77.4M 0s
00:45:47 1050K .......... .......... .......... .......... .......... 66% 51.0M 0s
00:45:47 1100K .......... .......... .......... .......... .......... 69% 105M 0s
00:45:47 1150K .......... .......... .......... .......... .......... 72% 4.21M 0s
00:45:47 1200K .......... .......... .......... .......... .......... 75% 94.4M 0s
00:45:47 1250K .......... .......... .......... .......... .......... 78% 261M 0s
00:45:47 1300K .......... .......... .......... .......... .......... 81% 61.4M 0s
00:45:47 1350K .......... .......... .......... .......... .......... 84% 61.0M 0s
00:45:47 1400K .......... .......... .......... .......... .......... 87% 4.31M 0s
00:45:47 1450K .......... .......... .......... .......... .......... 90% 20.1M 0s
00:45:47 1500K .......... .......... .......... .......... .......... 94% 17.5M 0s
00:45:47 1550K .......... .......... .......... .......... .......... 97% 24.7M 0s
00:45:47 1600K .......... .......... .......... .......... ........ 100% 17.2M=0.1s
00:45:47
00:45:47 2026-02-19 00:45:47 (14.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:45:47
00:45:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:47 --2026-02-19 00:45:47-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:47 HTTP request sent, awaiting response... 200 OK
00:45:47 Length: 36400 (36K) [application/java-archive]
00:45:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:45:47
00:45:47 0K .......... .......... .......... ..... 100% 33.4M=0.001s
00:45:47
00:45:47 2026-02-19 00:45:47 (33.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:45:47
00:45:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:47 --2026-02-19 00:45:47-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:47 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:47 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:47 HTTP request sent, awaiting response... 200 OK
00:45:47 Length: 79195 (77K) [application/java-archive]
00:45:47 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:45:47
00:45:47 0K .......... .......... .......... .......... .......... 64% 3.50M 0s
00:45:47 50K .......... .......... ....... 100% 10.4M=0.02s
00:45:47
00:45:47 2026-02-19 00:45:47 (4.57 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:45:47
00:45:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:47 --2026-02-19 00:45:47-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:47 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:47 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:48 HTTP request sent, awaiting response... 200 OK
00:45:48 Length: 277829 (271K) [application/java-archive]
00:45:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:45:48
00:45:48 0K .......... .......... .......... .......... .......... 18% 32.5M 0s
00:45:48 50K .......... .......... .......... .......... .......... 36% 3.54M 0s
00:45:48 100K .......... .......... .......... .......... .......... 55% 4.01M 0s
00:45:48 150K .......... .......... .......... .......... .......... 73% 34.2M 0s
00:45:48 200K .......... .......... .......... .......... .......... 92% 197M 0s
00:45:48 250K .......... .......... . 100% 355M=0.03s
00:45:48
00:45:48 2026-02-19 00:45:48 (9.08 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:45:48
00:45:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:48 --2026-02-19 00:45:48-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:48 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:48 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:48 HTTP request sent, awaiting response... 200 OK
00:45:48 Length: 579673 (566K) [application/java-archive]
00:45:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:45:48
00:45:48 0K .......... .......... .......... .......... .......... 8% 3.37M 0s
00:45:48 50K .......... .......... .......... .......... .......... 17% 7.60M 0s
00:45:48 100K .......... .......... .......... .......... .......... 26% 4.89M 0s
00:45:48 150K .......... .......... .......... .......... .......... 35% 10.3M 0s
00:45:48 200K .......... .......... .......... .......... .......... 44% 10.6M 0s
00:45:48 250K .......... .......... .......... .......... .......... 52% 10.3M 0s
00:45:48 300K .......... .......... .......... .......... .......... 61% 17.9M 0s
00:45:48 350K .......... .......... .......... .......... .......... 70% 24.5M 0s
00:45:48 400K .......... .......... .......... .......... .......... 79% 17.5M 0s
00:45:48 450K .......... .......... .......... .......... .......... 88% 17.3M 0s
00:45:48 500K .......... .......... .......... .......... .......... 97% 19.0M 0s
00:45:48 550K .......... ...... 100% 136M=0.06s
00:45:48
00:45:48 2026-02-19 00:45:48 (9.53 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:45:48
00:45:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:48 --2026-02-19 00:45:48-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:48 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:48 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:48 HTTP request sent, awaiting response... 200 OK
00:45:48 Length: 175836 (172K) [application/java-archive]
00:45:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:45:48
00:45:48 0K .......... .......... .......... .......... .......... 29% 32.3M 0s
00:45:48 50K .......... .......... .......... .......... .......... 58% 3.54M 0s
00:45:48 100K .......... .......... .......... .......... .......... 87% 3.95M 0s
00:45:48 150K .......... .......... . 100% 25.3M=0.03s
00:45:48
00:45:48 2026-02-19 00:45:48 (5.88 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:45:48
00:45:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:48 --2026-02-19 00:45:48-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:48 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:48 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:48 HTTP request sent, awaiting response... 200 OK
00:45:49 Length: 889211 (868K) [application/java-archive]
00:45:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:45:49
00:45:49 0K .......... .......... .......... .......... .......... 5% 31.7M 0s
00:45:49 50K .......... .......... .......... .......... .......... 11% 3.60M 0s
00:45:49 100K .......... .......... .......... .......... .......... 17% 3.86M 0s
00:45:49 150K .......... .......... .......... .......... .......... 23% 41.5M 0s
00:45:49 200K .......... .......... .......... .......... .......... 28% 158M 0s
00:45:49 250K .......... .......... .......... .......... .......... 34% 70.5M 0s
00:45:49 300K .......... .......... .......... .......... .......... 40% 64.8M 0s
00:45:49 350K .......... .......... .......... .......... .......... 46% 4.21M 0s
00:45:49 400K .......... .......... .......... .......... .......... 51% 136M 0s
00:45:49 450K .......... .......... .......... .......... .......... 57% 325M 0s
00:45:49 500K .......... .......... .......... .......... .......... 63% 62.8M 0s
00:45:49 550K .......... .......... .......... .......... .......... 69% 59.1M 0s
00:45:49 600K .......... .......... .......... .......... .......... 74% 4.23M 0s
00:45:49 650K .......... .......... .......... .......... .......... 80% 137M 0s
00:45:49 700K .......... .......... .......... .......... .......... 86% 227M 0s
00:45:49 750K .......... .......... .......... .......... .......... 92% 59.9M 0s
00:45:49 800K .......... .......... .......... .......... .......... 97% 62.7M 0s
00:45:49 850K .......... ........ 100% 293M=0.06s
00:45:49
00:45:49 2026-02-19 00:45:49 (14.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:45:49
00:45:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:49 --2026-02-19 00:45:49-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:49 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:49 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:49 HTTP request sent, awaiting response... 200 OK
00:45:49 Length: 736051 (719K) [application/java-archive]
00:45:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:45:49
00:45:49 0K .......... .......... .......... .......... .......... 6% 30.0M 0s
00:45:49 50K .......... .......... .......... .......... .......... 13% 3.34M 0s
00:45:49 100K .......... .......... .......... .......... .......... 20% 3.70M 0s
00:45:49 150K .......... .......... .......... .......... .......... 27% 41.2M 0s
00:45:49 200K .......... .......... .......... .......... .......... 34% 68.8M 0s
00:45:49 250K .......... .......... .......... .......... .......... 41% 150M 0s
00:45:49 300K .......... .......... .......... .......... .......... 48% 4.08M 0s
00:45:49 350K .......... .......... .......... .......... .......... 55% 34.9M 0s
00:45:49 400K .......... .......... .......... .......... .......... 62% 118M 0s
00:45:49 450K .......... .......... .......... .......... .......... 69% 46.3M 0s
00:45:49 500K .......... .......... .......... .......... .......... 76% 158M 0s
00:45:49 550K .......... .......... .......... .......... .......... 83% 4.23M 0s
00:45:49 600K .......... .......... .......... .......... .......... 90% 36.6M 0s
00:45:49 650K .......... .......... .......... .......... .......... 97% 272M 0s
00:45:49 700K .......... ........ 100% 58.9M=0.06s
00:45:49
00:45:49 2026-02-19 00:45:49 (11.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:45:49
00:45:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:49 --2026-02-19 00:45:49-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:49 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:49 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:49 HTTP request sent, awaiting response... 200 OK
00:45:49 Length: 331034 (323K) [application/java-archive]
00:45:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:45:49
00:45:49 0K .......... .......... .......... .......... .......... 15% 3.34M 0s
00:45:49 50K .......... .......... .......... .......... .......... 30% 9.32M 0s
00:45:49 100K .......... .......... .......... .......... .......... 46% 4.98M 0s
00:45:49 150K .......... .......... .......... .......... .......... 61% 8.84M 0s
00:45:49 200K .......... .......... .......... .......... .......... 77% 10.5M 0s
00:45:49 250K .......... .......... .......... .......... .......... 92% 19.2M 0s
00:45:49 300K .......... .......... ... 100% 12.9M=0.04s
00:45:49
00:45:49 2026-02-19 00:45:49 (7.15 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:45:49
00:45:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:49 --2026-02-19 00:45:49-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:49 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:49 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:49 HTTP request sent, awaiting response... 200 OK
00:45:49 Length: 6749842 (6.4M) [application/java-archive]
00:45:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:45:49
00:45:49 0K .......... .......... .......... .......... .......... 0% 36.6M 0s
00:45:49 50K .......... .......... .......... .......... .......... 1% 3.60M 1s
00:45:49 100K .......... .......... .......... .......... .......... 2% 86.2M 1s
00:45:49 150K .......... .......... .......... .......... .......... 3% 3.73M 1s
00:45:49 200K .......... .......... .......... .......... .......... 3% 154M 1s
00:45:49 250K .......... .......... .......... .......... .......... 4% 235M 1s
00:45:49 300K .......... .......... .......... .......... .......... 5% 60.8M 1s
00:45:49 350K .......... .......... .......... .......... .......... 6% 60.3M 0s
00:45:49 400K .......... .......... .......... .......... .......... 6% 4.20M 1s
00:45:50 450K .......... .......... .......... .......... .......... 7% 138M 1s
00:45:50 500K .......... .......... .......... .......... .......... 8% 61.5M 0s
00:45:50 550K .......... .......... .......... .......... .......... 9% 62.8M 0s
00:45:50 600K .......... .......... .......... .......... .......... 9% 138M 0s
00:45:50 650K .......... .......... .......... .......... .......... 10% 4.26M 0s
00:45:50 700K .......... .......... .......... .......... .......... 11% 118M 0s
00:45:50 750K .......... .......... .......... .......... .......... 12% 34.1M 0s
00:45:50 800K .......... .......... .......... .......... .......... 12% 129M 0s
00:45:50 850K .......... .......... .......... .......... .......... 13% 58.2M 0s
00:45:50 900K .......... .......... .......... .......... .......... 14% 4.46M 0s
00:45:50 950K .......... .......... .......... .......... .......... 15% 144M 0s
00:45:50 1000K .......... .......... .......... .......... .......... 15% 33.5M 0s
00:45:50 1050K .......... .......... .......... .......... .......... 16% 148M 0s
00:45:50 1100K .......... .......... .......... .......... .......... 17% 269M 0s
00:45:50 1150K .......... .......... .......... .......... .......... 18% 4.27M 0s
00:45:50 1200K .......... .......... .......... .......... .......... 18% 201M 0s
00:45:50 1250K .......... .......... .......... .......... .......... 19% 30.9M 0s
00:45:50 1300K .......... .......... .......... .......... .......... 20% 176M 0s
00:45:50 1350K .......... .......... .......... .......... .......... 21% 233M 0s
00:45:50 1400K .......... .......... .......... .......... .......... 21% 4.35M 0s
00:45:50 1450K .......... .......... .......... .......... .......... 22% 20.8M 0s
00:45:50 1500K .......... .......... .......... .......... .......... 23% 17.2M 0s
00:45:50 1550K .......... .......... .......... .......... .......... 24% 26.2M 0s
00:45:50 1600K .......... .......... .......... .......... .......... 25% 17.2M 0s
00:45:50 1650K .......... .......... .......... .......... .......... 25% 17.4M 0s
00:45:50 1700K .......... .......... .......... .......... .......... 26% 19.1M 0s
00:45:50 1750K .......... .......... .......... .......... .......... 27% 17.8M 0s
00:45:50 1800K .......... .......... .......... .......... .......... 28% 17.0M 0s
00:45:50 1850K .......... .......... .......... .......... .......... 28% 15.8M 0s
00:45:50 1900K .......... .......... .......... .......... .......... 29% 17.1M 0s
00:45:50 1950K .......... .......... .......... .......... .......... 30% 19.8M 0s
00:45:50 2000K .......... .......... .......... .......... .......... 31% 17.1M 0s
00:45:50 2050K .......... .......... .......... .......... .......... 31% 17.4M 0s
00:45:50 2100K .......... .......... .......... .......... .......... 32% 21.8M 0s
00:45:50 2150K .......... .......... .......... .......... .......... 33% 17.8M 0s
00:45:50 2200K .......... .......... .......... .......... .......... 34% 15.7M 0s
00:45:50 2250K .......... .......... .......... .......... .......... 34% 13.6M 0s
00:45:50 2300K .......... .......... .......... .......... .......... 35% 21.3M 0s
00:45:50 2350K .......... .......... .......... .......... .......... 36% 25.9M 0s
00:45:50 2400K .......... .......... .......... .......... .......... 37% 15.3M 0s
00:45:50 2450K .......... .......... .......... .......... .......... 37% 18.1M 0s
00:45:50 2500K .......... .......... .......... .......... .......... 38% 23.9M 0s
00:45:50 2550K .......... .......... .......... .......... .......... 39% 15.9M 0s
00:45:50 2600K .......... .......... .......... .......... .......... 40% 14.4M 0s
00:45:50 2650K .......... .......... .......... .......... .......... 40% 17.2M 0s
00:45:50 2700K .......... .......... .......... .......... .......... 41% 25.2M 0s
00:45:50 2750K .......... .......... .......... .......... .......... 42% 11.4M 0s
00:45:50 2800K .......... .......... .......... .......... .......... 43% 21.2M 0s
00:45:50 2850K .......... .......... .......... .......... .......... 43% 21.1M 0s
00:45:50 2900K .......... .......... .......... .......... .......... 44% 17.2M 0s
00:45:50 2950K .......... .......... .......... .......... .......... 45% 17.2M 0s
00:45:50 3000K .......... .......... .......... .......... .......... 46% 25.5M 0s
00:45:50 3050K .......... .......... .......... .......... .......... 47% 16.9M 0s
00:45:50 3100K .......... .......... .......... .......... .......... 47% 15.6M 0s
00:45:50 3150K .......... .......... .......... .......... .......... 48% 16.3M 0s
00:45:50 3200K .......... .......... .......... .......... .......... 49% 18.1M 0s
00:45:50 3250K .......... .......... .......... .......... .......... 50% 25.5M 0s
00:45:50 3300K .......... .......... .......... .......... .......... 50% 17.1M 0s
00:45:50 3350K .......... .......... .......... .......... .......... 51% 13.8M 0s
00:45:50 3400K .......... .......... .......... .......... .......... 52% 18.8M 0s
00:45:50 3450K .......... .......... .......... .......... .......... 53% 27.1M 0s
00:45:50 3500K .......... .......... .......... .......... .......... 53% 24.9M 0s
00:45:50 3550K .......... .......... .......... .......... .......... 54% 13.1M 0s
00:45:50 3600K .......... .......... .......... .......... .......... 55% 11.9M 0s
00:45:50 3650K .......... .......... .......... .......... .......... 56% 23.6M 0s
00:45:50 3700K .......... .......... .......... .......... .......... 56% 27.1M 0s
00:45:50 3750K .......... .......... .......... .......... .......... 57% 25.2M 0s
00:45:50 3800K .......... .......... .......... .......... .......... 58% 13.2M 0s
00:45:50 3850K .......... .......... .......... .......... .......... 59% 11.8M 0s
00:45:50 3900K .......... .......... .......... .......... .......... 59% 30.2M 0s
00:45:50 3950K .......... .......... .......... .......... .......... 60% 22.2M 0s
00:45:50 4000K .......... .......... .......... .......... .......... 61% 18.2M 0s
00:45:50 4050K .......... .......... .......... .......... .......... 62% 16.8M 0s
00:45:50 4100K .......... .......... .......... .......... .......... 62% 11.8M 0s
00:45:50 4150K .......... .......... .......... .......... .......... 63% 24.2M 0s
00:45:50 4200K .......... .......... .......... .......... .......... 64% 25.5M 0s
00:45:50 4250K .......... .......... .......... .......... .......... 65% 23.6M 0s
00:45:50 4300K .......... .......... .......... .......... .......... 65% 12.2M 0s
00:45:50 4350K .......... .......... .......... .......... .......... 66% 13.2M 0s
00:45:50 4400K .......... .......... .......... .......... .......... 67% 25.5M 0s
00:45:50 4450K .......... .......... .......... .......... .......... 68% 26.0M 0s
00:45:50 4500K .......... .......... .......... .......... .......... 69% 12.3M 0s
00:45:50 4550K .......... .......... .......... .......... .......... 69% 31.9M 0s
00:45:50 4600K .......... .......... .......... .......... .......... 70% 11.4M 0s
00:45:50 4650K .......... .......... .......... .......... .......... 71% 25.5M 0s
00:45:50 4700K .......... .......... .......... .......... .......... 72% 18.1M 0s
00:45:50 4750K .......... .......... .......... .......... .......... 72% 12.5M 0s
00:45:50 4800K .......... .......... .......... .......... .......... 73% 30.7M 0s
00:45:50 4850K .......... .......... .......... .......... .......... 74% 11.6M 0s
00:45:50 4900K .......... .......... .......... .......... .......... 75% 34.0M 0s
00:45:50 4950K .......... .......... .......... .......... .......... 75% 25.4M 0s
00:45:50 5000K .......... .......... .......... .......... .......... 76% 13.4M 0s
00:45:50 5050K .......... .......... .......... .......... .......... 77% 31.7M 0s
00:45:50 5100K .......... .......... .......... .......... .......... 78% 9.60M 0s
00:45:50 5150K .......... .......... .......... .......... .......... 78% 35.6M 0s
00:45:50 5200K .......... .......... .......... .......... .......... 79% 22.9M 0s
00:45:50 5250K .......... .......... .......... .......... .......... 80% 13.3M 0s
00:45:50 5300K .......... .......... .......... .......... .......... 81% 29.7M 0s
00:45:50 5350K .......... .......... .......... .......... .......... 81% 12.8M 0s
00:45:50 5400K .......... .......... .......... .......... .......... 82% 28.8M 0s
00:45:50 5450K .......... .......... .......... .......... .......... 83% 18.1M 0s
00:45:50 5500K .......... .......... .......... .......... .......... 84% 13.3M 0s
00:45:50 5550K .......... .......... .......... .......... .......... 84% 30.7M 0s
00:45:50 5600K .......... .......... .......... .......... .......... 85% 10.0M 0s
00:45:50 5650K .......... .......... .......... .......... .......... 86% 31.7M 0s
00:45:50 5700K .......... .......... .......... .......... .......... 87% 26.0M 0s
00:45:50 5750K .......... .......... .......... .......... .......... 87% 13.4M 0s
00:45:50 5800K .......... .......... .......... .......... .......... 88% 24.2M 0s
00:45:50 5850K .......... .......... .......... .......... .......... 89% 26.0M 0s
00:45:50 5900K .......... .......... .......... .......... .......... 90% 9.70M 0s
00:45:50 5950K .......... .......... .......... .......... .......... 91% 24.8M 0s
00:45:50 6000K .......... .......... .......... .......... .......... 91% 15.2M 0s
00:45:50 6050K .......... .......... .......... .......... .......... 92% 21.3M 0s
00:45:50 6100K .......... .......... .......... .......... .......... 93% 27.6M 0s
00:45:50 6150K .......... .......... .......... .......... .......... 94% 11.4M 0s
00:45:50 6200K .......... .......... .......... .......... .......... 94% 24.1M 0s
00:45:50 6250K .......... .......... .......... .......... .......... 95% 35.8M 0s
00:45:50 6300K .......... .......... .......... .......... .......... 96% 11.4M 0s
00:45:50 6350K .......... .......... .......... .......... .......... 97% 19.9M 0s
00:45:50 6400K .......... .......... .......... .......... .......... 97% 12.9M 0s
00:45:50 6450K .......... .......... .......... .......... .......... 98% 22.8M 0s
00:45:50 6500K .......... .......... .......... .......... .......... 99% 25.8M 0s
00:45:50 6550K .......... .......... .......... .......... . 100% 12.9M=0.4s
00:45:50
00:45:50 2026-02-19 00:45:50 (17.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:45:50
00:45:50 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:50 --2026-02-19 00:45:50-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:50 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:50 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:50 HTTP request sent, awaiting response... 200 OK
00:45:51 Length: 1732435 (1.7M) [application/java-archive]
00:45:51 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:45:51
00:45:51 0K .......... .......... .......... .......... .......... 2% 33.4M 0s
00:45:51 50K .......... .......... .......... .......... .......... 5% 3.55M 0s
00:45:51 100K .......... .......... .......... .......... .......... 8% 1.62M 0s
00:45:51 150K .......... .......... .......... .......... .......... 11% 76.0M 0s
00:45:51 200K .......... .......... .......... .......... .......... 14% 75.3M 0s
00:45:51 250K .......... .......... .......... .......... .......... 17% 1.51M 0s
00:45:51 300K .......... .......... .......... .......... .......... 20% 61.7M 0s
00:45:51 350K .......... .......... .......... .......... .......... 23% 1.76M 0s
00:45:51 400K .......... .......... .......... .......... .......... 26% 76.5M 0s
00:45:51 450K .......... .......... .......... .......... .......... 29% 56.3M 0s
00:45:51 500K .......... .......... .......... .......... .......... 32% 1.95M 0s
00:45:51 550K .......... .......... .......... .......... .......... 35% 72.4M 0s
00:45:51 600K .......... .......... .......... .......... .......... 38% 2.19M 0s
00:45:51 650K .......... .......... .......... .......... .......... 41% 65.3M 0s
00:45:51 700K .......... .......... .......... .......... .......... 44% 62.0M 0s
00:45:51 750K .......... .......... .......... .......... .......... 47% 2.35M 0s
00:45:51 800K .......... .......... .......... .......... .......... 50% 115M 0s
00:45:51 850K .......... .......... .......... .......... .......... 53% 2.73M 0s
00:45:51 900K .......... .......... .......... .......... .......... 56% 95.7M 0s
00:45:51 950K .......... .......... .......... .......... .......... 59% 76.6M 0s
00:45:51 1000K .......... .......... .......... .......... .......... 62% 2.87M 0s
00:45:51 1050K .......... .......... .......... .......... .......... 65% 69.8M 0s
00:45:51 1100K .......... .......... .......... .......... .......... 67% 3.27M 0s
00:45:51 1150K .......... .......... .......... .......... .......... 70% 132M 0s
00:45:51 1200K .......... .......... .......... .......... .......... 73% 100M 0s
00:45:51 1250K .......... .......... .......... .......... .......... 76% 48.1M 0s
00:45:51 1300K .......... .......... .......... .......... .......... 79% 102M 0s
00:45:51 1350K .......... .......... .......... .......... .......... 82% 4.38M 0s
00:45:51 1400K .......... .......... .......... .......... .......... 85% 104M 0s
00:45:51 1450K .......... .......... .......... .......... .......... 88% 84.0M 0s
00:45:51 1500K .......... .......... .......... .......... .......... 91% 35.4M 0s
00:45:51 1550K .......... .......... .......... .......... .......... 94% 103M 0s
00:45:51 1600K .......... .......... .......... .......... .......... 97% 4.56M 0s
00:45:51 1650K .......... .......... .......... .......... . 100% 43.2M=0.3s
00:45:51
00:45:51 2026-02-19 00:45:51 (6.37 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:45:51
00:45:51 + for x in *.jar
00:45:51 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:45:51 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:51 ++ deactivate nondestructive
00:45:51 ++ '[' -n '' ']'
00:45:51 ++ '[' -n '' ']'
00:45:51 ++ hash -r
00:45:51 ++ '[' -n '' ']'
00:45:51 ++ unset VIRTUAL_ENV
00:45:51 ++ unset VIRTUAL_ENV_PROMPT
00:45:51 ++ '[' '!' nondestructive = nondestructive ']'
00:45:51 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:51 ++ export VIRTUAL_ENV
00:45:51 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:51 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:51 ++ export PATH
00:45:51 ++ '[' -n '' ']'
00:45:51 ++ '[' -z '' ']'
00:45:51 ++ _OLD_VIRTUAL_PS1=
00:45:51 ++ PS1='(.venv3) '
00:45:51 ++ export PS1
00:45:51 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:51 ++ export VIRTUAL_ENV_PROMPT
00:45:51 ++ hash -r
00:45:51 + pip install -U pip
00:45:52 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:52 Collecting pip
00:45:52 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:45:52 Installing collected packages: pip
00:45:52 Attempting uninstall: pip
00:45:52 Found existing installation: pip 22.3.1
00:45:52 Uninstalling pip-22.3.1:
00:45:52 Successfully uninstalled pip-22.3.1
00:45:53 Successfully installed pip-26.0.1
00:45:53 WARNING: There was an error checking the latest version of pip.
00:45:53 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:53 Collecting zeroc-ice==3.6.5
00:45:54 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:55 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.4 MB/s 0:00:01
00:45:56 Installing collected packages: zeroc-ice
00:45:56 Successfully installed zeroc-ice-3.6.5
00:45:56 + pip install markdown
00:45:57 Collecting markdown
00:45:57 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:45:57 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:45:57 Installing collected packages: markdown
00:45:57 Successfully installed markdown-3.10.2
00:45:57 + pip install reportlab
00:45:57 Collecting reportlab
00:45:57 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:45:58 Collecting pillow>=9.0.0 (from reportlab)
00:45:58 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:58 Collecting charset-normalizer (from reportlab)
00:45:58 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:58 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:45:58 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:58 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:58 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:59
00:45:59 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:45:59 + pip install omego
00:45:59 Collecting omego
00:45:59 Downloading omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:45:59 Collecting future (from omego)
00:45:59 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:59 Collecting yaclifw>=0.1.1 (from omego)
00:45:59 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:59 Collecting six (from yaclifw>=0.1.1->omego)
00:45:59 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:59 Downloading omego-0.8.0-py3-none-any.whl (41 kB)
00:45:59 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:59 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:59 Installing collected packages: six, future, yaclifw, omego
00:46:00
00:46:00 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:46:00 + pip install tables
00:46:00 Collecting tables
00:46:00 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:46:00 Collecting numpy>=1.20.0 (from tables)
00:46:00 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:46:00 Collecting numexpr>=2.6.2 (from tables)
00:46:00 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:46:01 Collecting packaging (from tables)
00:46:01 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:46:01 Collecting py-cpuinfo (from tables)
00:46:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:46:01 Collecting blosc2>=2.3.0 (from tables)
00:46:01 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:46:01 Collecting typing-extensions>=4.4.0 (from tables)
00:46:01 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:46:01 Collecting ndindex (from blosc2>=2.3.0->tables)
00:46:01 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:46:01 Collecting msgpack (from blosc2>=2.3.0->tables)
00:46:01 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:01 Collecting requests (from blosc2>=2.3.0->tables)
00:46:01 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:46:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:46:01 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:46:01 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:46:01 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:46:01 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:46:01 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:46:01 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:46:01 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:46:01 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:46:01 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:46:01 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:46:01 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:46:01 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:46:01 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:46:01 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:46:01 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:46:01 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:46:01 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:46:01 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:46:01 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:46:01 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:46:04
00:46:04 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:46:04 + pip install jinja2
00:46:05 Collecting jinja2
00:46:05 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:46:05 Collecting MarkupSafe>=2.0 (from jinja2)
00:46:05 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:46:05 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:46:05 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:46:05 Installing collected packages: MarkupSafe, jinja2
00:46:05
00:46:05 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:46:05 + pip install omero-py
00:46:05 Collecting omero-py
00:46:05 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:46:05 Collecting appdirs (from omero-py)
00:46:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:46:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:46:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:46:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:46:05 Collecting PyYAML (from omero-py)
00:46:05 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:46:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:46:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:46:05 Collecting portalocker (from omero-py)
00:46:05 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:46:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:46:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:46:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:46:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:46:05 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:46:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:46:05 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:46:05 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:46:06 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:46:07
00:46:07 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:46:07 + pip install pyarrow
00:46:08 Collecting pyarrow
00:46:08 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:46:08 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:46:08 Installing collected packages: pyarrow
00:46:09 Successfully installed pyarrow-23.0.1
00:46:09 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:46:10 Collecting omero-metadata
00:46:10 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-4wcccek3/omero-metadata_276cd73495ee465d88473387f68f116e
00:46:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-4wcccek3/omero-metadata_276cd73495ee465d88473387f68f116e
00:46:11 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 2463de5d19f863aefd56dd6052b2aa94e88d2ec6
00:46:11 Installing build dependencies: started
00:46:11 Installing build dependencies: finished with status 'done'
00:46:11 Getting requirements to build wheel: started
00:46:12 Getting requirements to build wheel: finished with status 'done'
00:46:12 Preparing metadata (pyproject.toml): started
00:46:12 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:12 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:46:12 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:46:12 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:46:12 Collecting pandas (from omero-metadata)
00:46:12 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:46:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:46:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:46:12 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:46:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:46:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:46:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:46:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:46:12 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:46:12 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:46:12 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:46:12 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:46:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:46:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:46:12 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:46:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:46:12 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:46:12 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:46:12 Building wheels for collected packages: omero-metadata
00:46:12 Building wheel for omero-metadata (pyproject.toml): started
00:46:12 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:46:12 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=ef62ff3518565ef27e70a00ee9ece1a251c94651187b7e79aa0ffeab47d75490
00:46:12 Stored in directory: /tmp/pip-ephem-wheel-cache-my7ex7sw/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:46:12 Successfully built omero-metadata
00:46:12 Installing collected packages: python-dateutil, pandas, omero-metadata
00:46:17
00:46:17 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:46:17 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:17 Collecting omero-cli-render
00:46:17 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-lqlln2a4/omero-cli-render_5b00681408a445fab30141234d5059ee
00:46:17 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-lqlln2a4/omero-cli-render_5b00681408a445fab30141234d5059ee
00:46:18 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:18 Switched to a new branch 'merge_ci'
00:46:18 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:18 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit d7783f37a063159ffb192ef8c41f11693cc3dede
00:46:18 Installing build dependencies: started
00:46:19 Installing build dependencies: finished with status 'done'
00:46:19 Getting requirements to build wheel: started
00:46:19 Getting requirements to build wheel: finished with status 'done'
00:46:19 Preparing metadata (pyproject.toml): started
00:46:19 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:19 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:46:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:46:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:46:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:19 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:46:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:46:19 Building wheels for collected packages: omero-cli-render
00:46:19 Building wheel for omero-cli-render (pyproject.toml): started
00:46:20 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:20 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=5041a15cb3aa5a32f4ad2aad981f0eaf412781a4d13a36fa4859b28690dc662f
00:46:20 Stored in directory: /tmp/pip-ephem-wheel-cache-wd9lkvs7/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:20 Successfully built omero-cli-render
00:46:20 Installing collected packages: omero-cli-render
00:46:20 Successfully installed omero-cli-render-0.8.2.dev0
00:46:20 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:20 Collecting omero-cli-duplicate
00:46:20 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-rny8llg8/omero-cli-duplicate_dd11ebaf78244ca18a7f8a8e76eb17cb
00:46:20 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-rny8llg8/omero-cli-duplicate_dd11ebaf78244ca18a7f8a8e76eb17cb
00:46:21 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:22 Switched to a new branch 'merge_ci'
00:46:22 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:22 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 03bc0e8107551b4dba49665c73274c9c9e987190
00:46:22 Installing build dependencies: started
00:46:22 Installing build dependencies: finished with status 'done'
00:46:22 Getting requirements to build wheel: started
00:46:23 Getting requirements to build wheel: finished with status 'done'
00:46:23 Preparing metadata (pyproject.toml): started
00:46:23 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:23 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:46:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:46:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:46:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:23 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:46:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:46:23 Building wheels for collected packages: omero-cli-duplicate
00:46:23 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:23 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:23 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=b752090944acdc4f0cf8a390c10f7403c3bd2730d923c307d10e3dc1e2c4e06c
00:46:23 Stored in directory: /tmp/pip-ephem-wheel-cache-faqs3bs9/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:23 Successfully built omero-cli-duplicate
00:46:23 Installing collected packages: omero-cli-duplicate
00:46:23 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:46:24 Collecting omero-cli-zarr
00:46:24 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-81ipkroi/omero-cli-zarr_6cbdbf15a9d44d6d8d71e003db4e56c4
00:46:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-81ipkroi/omero-cli-zarr_6cbdbf15a9d44d6d8d71e003db4e56c4
00:46:24 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:25 Switched to a new branch 'merge_ci'
00:46:25 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:25 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 49323aefb4f63bacf37a4164fb732a48f12a0256
00:46:25 Installing build dependencies: started
00:46:25 Installing build dependencies: finished with status 'done'
00:46:25 Getting requirements to build wheel: started
00:46:26 Getting requirements to build wheel: finished with status 'done'
00:46:26 Installing backend dependencies: started
00:46:26 Installing backend dependencies: finished with status 'done'
00:46:26 Preparing metadata (pyproject.toml): started
00:46:27 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:46:27 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:46:27 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:46:27 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.2)
00:46:28 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:28 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:46:28 Collecting zarr>=3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:28 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:46:29 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:29 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:46:29 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:29 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:46:29 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:29 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:46:29 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:29 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:46:30 Collecting rangehttpserver (from ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:46:30 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:46:30 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:46:30 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:46:30 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:46:30 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (6.0.3)
00:46:30 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:46:30 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:46:30 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:46:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:46:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:46:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:46:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:46:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:46:30 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:46:30 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached aiobotocore-3.1.3-py3-none-any.whl.metadata (26 kB)
00:46:30 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:46:30 Collecting botocore<1.42.50,>=1.41.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached botocore-1.42.49-py3-none-any.whl.metadata (5.9 kB)
00:46:30 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:46:30 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:30 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:46:30 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:46:31 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:46:31 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:46:31 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:46:31 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:46:31 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:46:31 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:46:31 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:46:31 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.50,>=1.41.0->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:46:31 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
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00:46:31 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:46:31 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:46:31 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:31 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:46:32 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:32 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:46:32 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
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00:46:32 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
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00:46:32 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
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00:46:32 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:32 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:46:32 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:46:32 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:46:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:46:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:46:32 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:46:32 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:46:32 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:46:32 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:46:32 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:46:32 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:46:32 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:46:32 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:46:32 Using cached aiobotocore-3.1.3-py3-none-any.whl (87 kB)
00:46:32 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:46:32 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:46:32 Using cached botocore-1.42.49-py3-none-any.whl (14.6 MB)
00:46:32 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:46:32 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:46:32 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:46:32 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:46:32 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:46:32 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:46:32 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:46:32 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:46:32 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:46:32 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:46:32 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:46:32 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:46:32 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:46:32 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:46:32 Using cached tifffile-2026.2.16-py3-none-any.whl (233 kB)
00:46:32 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:46:32 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:46:32 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:46:32 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:46:32 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:46:32 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:46:32 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:46:32 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:46:32 Building wheels for collected packages: omero-cli-zarr
00:46:32 Building wheel for omero-cli-zarr (pyproject.toml): started
00:46:32 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:46:32 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev152+g49323ae-py3-none-any.whl size=38159 sha256=0a966eabcd8241a95e73ce3b276c765d31fc49a7e9350ffd80da0c82f9502eb3
00:46:32 Stored in directory: /tmp/pip-ephem-wheel-cache-qolz93sl/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:46:32 Successfully built omero-cli-zarr
00:46:33 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:46:42
00:46:42 Successfully installed aiobotocore-3.1.3 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.49 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev152+g49323ae partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.2.16 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:46:42 + pip install omero-certificates
00:46:43 Collecting omero-certificates
00:46:43 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:46:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:46:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:46:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:43 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:46:43 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:43 Installing collected packages: omero-certificates
00:46:43 Successfully installed omero-certificates-0.4.0
00:46:43 + for x in *.tar.gz
00:46:43 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:43 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:43 Installing build dependencies: started
00:46:44 Installing build dependencies: finished with status 'done'
00:46:44 Getting requirements to build wheel: started
00:46:44 Getting requirements to build wheel: finished with status 'done'
00:46:44 Preparing metadata (pyproject.toml): started
00:46:44 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:44 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:46:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:46:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:46:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:44 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:46:44 Building wheels for collected packages: omero-dropbox
00:46:44 Building wheel for omero-dropbox (pyproject.toml): started
00:46:45 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:45 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=9f57538c38c6bc35c37dc74b2e6dce85cb4fdee3471fa0cc4df0da7767024ff3
00:46:45 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:45 Successfully built omero-dropbox
00:46:45 Installing collected packages: omero-dropbox
00:46:45 Successfully installed omero-dropbox-5.7.1.dev0
00:46:45 + for x in *.tar.gz
00:46:45 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:45 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:45 Installing build dependencies: started
00:46:46 Installing build dependencies: finished with status 'done'
00:46:46 Getting requirements to build wheel: started
00:46:46 Getting requirements to build wheel: finished with status 'done'
00:46:46 Preparing metadata (pyproject.toml): started
00:46:47 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:47 Building wheels for collected packages: omero_marshal
00:46:47 Building wheel for omero_marshal (pyproject.toml): started
00:46:47 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:47 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=e4bffe8b0f21b037ded24b09cea3cdeffd2c0682e3e55e9f45456c7c67882ac3
00:46:47 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:47 Successfully built omero_marshal
00:46:47 Installing collected packages: omero_marshal
00:46:47 Successfully installed omero_marshal-0.9.2.dev0
00:46:47 + for x in *.tar.gz
00:46:47 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:46:47 Processing ./omero_py-5.22.1.dev0.tar.gz
00:46:48 Installing build dependencies: started
00:46:48 Installing build dependencies: finished with status 'done'
00:46:48 Getting requirements to build wheel: started
00:46:49 Getting requirements to build wheel: finished with status 'done'
00:46:49 Preparing metadata (pyproject.toml): started
00:46:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:46:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:46:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:46:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:46:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:46:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:46:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:46:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:46:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:46:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:46:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:46:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.1.4)
00:46:49 Building wheels for collected packages: omero-py
00:46:49 Building wheel for omero-py (pyproject.toml): started
00:46:50 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:50 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786653 sha256=2c7b4436e2419339a89f0b1c6b37e7503862a19df918b449baa6552daaa56af7
00:46:50 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:46:50 Successfully built omero-py
00:46:50 Installing collected packages: omero-py
00:46:50 Attempting uninstall: omero-py
00:46:50 Found existing installation: omero-py 5.22.0
00:46:50 Uninstalling omero-py-5.22.0:
00:46:51 Successfully uninstalled omero-py-5.22.0
00:46:52 Successfully installed omero-py-5.22.1.dev0
00:46:53 + for x in *.tar.gz
00:46:53 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:46:53 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:46:53 Installing build dependencies: started
00:46:54 Installing build dependencies: finished with status 'done'
00:46:54 Getting requirements to build wheel: started
00:46:54 Getting requirements to build wheel: finished with status 'done'
00:46:54 Preparing metadata (pyproject.toml): started
00:46:54 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:54 Building wheels for collected packages: omero-scripts
00:46:54 Building wheel for omero-scripts (pyproject.toml): started
00:46:54 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:54 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=a08f5b669b90e74ef52558e36ca8277f39cba95932fc66aa86f0a7ff3c2b7520
00:46:54 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:46:54 Successfully built omero-scripts
00:46:55 Installing collected packages: omero-scripts
00:46:55 Successfully installed omero-scripts-5.10.1.dev0
00:46:55 + for x in *.tar.gz
00:46:55 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:46:55 Processing ./omero_web-5.31.1.dev0.tar.gz
00:46:55 Installing build dependencies: started
00:46:56 Installing build dependencies: finished with status 'done'
00:46:56 Getting requirements to build wheel: started
00:46:56 Getting requirements to build wheel: finished with status 'done'
00:46:56 Preparing metadata (pyproject.toml): started
00:46:57 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:57 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:46:57 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:46:57 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:46:57 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:46:57 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:46:57 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:46:57 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:57 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:46:57 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:57 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:46:57 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:46:57 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:46:57 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:46:57 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:46:57 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:46:57 Collecting pytz (from omero-web==5.31.1.dev0)
00:46:57 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:57 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:46:57 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:46:57 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:46:57 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:57 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:57 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:46:57 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:57 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:57 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:46:57 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:46:57 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:46:57 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:46:57 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:46:57 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:46:57 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:46:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:46:57 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:46:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:46:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:46:57 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:46:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.1.4)
00:46:57 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:57 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:46:57 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:46:57 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:46:57 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:57 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:46:57 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:57 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:46:57 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:57 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:57 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:46:57 Building wheels for collected packages: omero-web
00:46:57 Building wheel for omero-web (pyproject.toml): started
00:46:58 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:58 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819289 sha256=0fab676c8d892af44f5879cfcc99696b1ebf644d99943d8bf1af5970a0ab07ba
00:46:58 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:46:58 Successfully built omero-web
00:46:59 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:47:02
00:47:02 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:47:02 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:02 --2026-02-19 00:47:02-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:02 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ...
00:47:02 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:47:02 HTTP request sent, awaiting response... 200 OK
00:47:03 Length: 137709 (134K) [text/plain]
00:47:03 Saving to: ‘Figure_To_Pdf.py’
00:47:03
00:47:03 0K .......... .......... .......... .......... .......... 37% 3.88M 0s
00:47:03 50K .......... .......... .......... .......... .......... 74% 12.7M 0s
00:47:03 100K .......... .......... .......... .... 100% 6.87M=0.02s
00:47:03
00:47:03 2026-02-19 00:47:03 (6.16 MB/s) - ‘Figure_To_Pdf.py’ saved [137709/137709]
00:47:03
00:47:03 + chmod 755 Figure_To_Pdf.py
00:47:03 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:47:03 + omero config set omero.db.name OMERO-server
00:47:05 + omero config set omero.db.host pg
00:47:07 + omero config set omero.db.user postgres
00:47:09 + omero config set omero.data.dir /home/omero/omero-server-data
00:47:11 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:47:13 + omero config set omero.db.poolsize 25
00:47:14 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:47:16 + omero config set omero.security.trustStorePassword changeit
00:47:18 + omero config set omero.mail.config true
00:47:20 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:47:22 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:47:24 + omero certificates
00:47:26 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:47:26 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:47:26 + '[' false = true ']'
00:47:26 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:47:26 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:47:26 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:47:26 2026-02-19 00:47:26,679 [ omego.db] DEBUG dbcommand => upgrade
00:47:26 2026-02-19 00:47:26,680 [ omego.db] DEBUG dbhost => localhost
00:47:26 2026-02-19 00:47:26,680 [ omego.db] DEBUG dbname => OMERO-server
00:47:26 2026-02-19 00:47:26,680 [ omego.db] DEBUG dbpass => omero
00:47:26 2026-02-19 00:47:26,680 [ omego.db] DEBUG dbuser => omero
00:47:26 2026-02-19 00:47:26,680 [ omego.db] DEBUG rootpass => omero
00:47:26 2026-02-19 00:47:26,680 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:47:26 2026-02-19 00:47:26,680 [omego.extern] INFO Executing : omero version
00:47:28 OMERO.py version:
00:47:28 OMERO.server version:
00:47:28 5.6.3-594-07d100ce80-ice36-b58
00:47:28 5.22.1.dev0
00:47:28 2026-02-19 00:47:28,651 [omego.extern] INFO Completed [1.971 s]
00:47:28 2026-02-19 00:47:28,651 [omego.extern] DEBUG Using omero CLI from omero
00:47:28 2026-02-19 00:47:28,651 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:28 2026-02-19 00:47:28,651 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:28 2026-02-19 00:47:28,651 [omego.extern] INFO Executing : omero config get --show-password
00:47:30 2026-02-19 00:47:30,582 [omego.extern] INFO Completed [1.931 s]
00:47:30 2026-02-19 00:47:30,583 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:30 2026-02-19 00:47:30,583 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:30 2026-02-19 00:47:30,588 [omego.extern] INFO Completed [0.005 s]
00:47:30 2026-02-19 00:47:30,588 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:47:30 2026-02-19 00:47:30,588 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:47:30
00:47:30 2026-02-19 00:47:30,588 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:30 2026-02-19 00:47:30,588 [omego.extern] INFO Executing : omero config get --show-password
00:47:32 2026-02-19 00:47:32,510 [omego.extern] INFO Completed [1.921 s]
00:47:32 2026-02-19 00:47:32,510 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:32 2026-02-19 00:47:32,510 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:32 2026-02-19 00:47:32,519 [omego.extern] INFO Completed [0.009 s]
00:47:32 2026-02-19 00:47:32,519 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
00:47:32 2026-02-19 00:47:32,519 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:32 2026-02-19 00:47:32,519 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:32 2026-02-19 00:47:32,519 [omego.extern] INFO Executing : omero config get --show-password
00:47:34 2026-02-19 00:47:34,510 [omego.extern] INFO Completed [1.991 s]
00:47:34 2026-02-19 00:47:34,510 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:34 2026-02-19 00:47:34,510 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:34 2026-02-19 00:47:34,521 [omego.extern] INFO Completed [0.010 s]
00:47:34 2026-02-19 00:47:34,521 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:34 2026-02-19 00:47:34,521 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:34 2026-02-19 00:47:34,522 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:34 + export LANG=en_US.UTF-8
00:47:34 + LANG=en_US.UTF-8
00:47:34 + export LANGUAGE=en_US:en
00:47:34 + LANGUAGE=en_US:en
00:47:34 + export LC_ALL=en_US.UTF-8
00:47:34 + LC_ALL=en_US.UTF-8
00:47:34 + BUILD_ID=DONT_KILL_ME
00:47:34 + omero admin start
00:47:39 No descriptor given. Using etc/grid/default.xml
00:47:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:46 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:46 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:46 Waiting on startup. Use CTRL-C to exit
00:47:47 + omero admin waitup
00:47:49 Waiting on startup. Use CTRL-C to exit
00:47:49 + omero admin diagnostics
00:47:51
00:47:51 ================================================================================
00:47:51 OMERO Diagnostics (admin)
00:47:51 ================================================================================
00:47:51
00:47:51 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:51 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:51 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:51 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:51 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:51 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:51
00:47:51 Component: OMERO.py 5.22.1.dev0
00:47:51 Component: OMERO.server 5.6.3-594-07d100ce80-ice36-b58
00:47:51
00:47:51 Server: icegridnode running
00:47:51 Server: Blitz-0 active (pid = 17651, enabled)
00:47:51 Server: Indexer-0 activating (enabled)
00:47:51 Server: OMERO.Glacier2 active (pid = 17685, enabled)
00:47:51 Server: OMERO.IceStorm active (pid = 17701, enabled)
00:47:51 Server: Processor-0 active (pid = 17712, enabled)
00:47:51 Server: Tables-0 activating (enabled)
00:47:51
00:47:51 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:51 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1
00:47:51 Log files: DropBox.log n/a
00:47:51 Log files: FileServer.log n/a
00:47:51 Log files: Indexer-0.log 238 B
00:47:51 Log files: MonitorServer.log n/a
00:47:51 Log files: Processor-0.log 735 B
00:47:51 Log files: Tables-0.log 856 B
00:47:51 Log files: TestDropBox.log n/a
00:47:51 Log files: master.err empty
00:47:51 Log files: master.out 30.1 KB
00:47:51 Log files: Total size 0.06 MB
00:47:51
00:47:51
00:47:51 Environment:OMERO_HOME=(unset)
00:47:51 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:51 Environment:OMERO_NODE=(unset)
00:47:51 Environment:OMERO_MASTER=(unset)
00:47:51 Environment:OMERO_USERDIR=(unset)
00:47:51 Environment:OMERO_TMPDIR=(unset)
00:47:51 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:51 Environment:PYTHONPATH=(unset)
00:47:51 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:51 Environment:LD_LIBRARY_PATH=(unset)
00:47:51 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:51
00:47:51 OMERO SSL port:4064
00:47:51 OMERO TCP port:4063
00:47:51 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:51 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:51
00:47:51 JVM settings: Blitz-${index} -Xmx7200m
00:47:51 JVM settings: Indexer-${index} -Xmx4800m
00:47:51 JVM settings: PixelData-${index} -Xmx7200m
00:47:51 JVM settings: Repository-${index} -Xmx4800m
00:47:51
00:47:51 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 19 February 2026 926a4c9062e8eb9dbebcbe6f15d097028a3b3015
00:47:51 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 19 February 2026 926a4c9062e8eb9dbebcbe6f15d097028a3b3015
00:47:51 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 19 February 2026 926a4c9062e8eb9dbebcbe6f15d097028a3b3015
00:47:51 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 19 February 2026 501a8773c5e243ccbf6cb846476882ddfbbaddfe
00:47:51 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 19 February 2026 501a8773c5e243ccbf6cb846476882ddfbbaddfe
00:47:51 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 19 February 2026 501a8773c5e243ccbf6cb846476882ddfbbaddfe
00:47:51 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 19 February 2026 501a8773c5e243ccbf6cb846476882ddfbbaddfe
00:47:51 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 19 February 2026 501a8773c5e243ccbf6cb846476882ddfbbaddfe
00:47:51 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 19 February 2026 501a8773c5e243ccbf6cb846476882ddfbbaddfe
00:47:51 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:47:51 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:47:51 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:47:51 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:47:51 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:47:51 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:47:51 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:47:51 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT dceb582a754e0a165eab28c191397a16bb6c1aaf
00:47:51 + deactivate
00:47:51 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:51 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:51 + export PATH
00:47:51 + unset _OLD_VIRTUAL_PATH
00:47:51 + '[' -n '' ']'
00:47:51 + hash -r
00:47:51 + '[' -n '' ']'
00:47:51 + unset VIRTUAL_ENV
00:47:51 + unset VIRTUAL_ENV_PROMPT
00:47:51 + '[' '!' '' = nondestructive ']'
00:47:51 + unset -f deactivate
00:47:51 Finished: SUCCESS
