00:47:45 Started by upstream project "Trigger" build number 655
00:47:45 originally caused by:
00:47:45 Started by timer
00:47:45 Running as SYSTEM
00:47:45 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:47:45 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6123354452351564571.sh
00:47:45 + source /home/settings.env
00:47:45 ++ OMERO_DB_HOST=pg
00:47:45 ++ OMERO_DB_USER=postgres
00:47:45 ++ OMERO_DB_PASS=
00:47:45 ++ OMERO_ROOT_PASS=omero
00:47:45 ++ OMERO_DATA_DIR=/OMERO
00:47:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:47:45 + OMERO_DB_NAME=OMERO-server
00:47:45 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:47:45 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:45 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:45 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:47:45 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:47:45 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:47:45 ++ deactivate nondestructive
00:47:45 ++ '[' -n '' ']'
00:47:45 ++ '[' -n '' ']'
00:47:45 ++ hash -r
00:47:45 ++ '[' -n '' ']'
00:47:45 ++ unset VIRTUAL_ENV
00:47:45 ++ unset VIRTUAL_ENV_PROMPT
00:47:45 ++ '[' '!' nondestructive = nondestructive ']'
00:47:45 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:47:45 ++ export VIRTUAL_ENV
00:47:45 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:45 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:45 ++ export PATH
00:47:45 ++ '[' -n '' ']'
00:47:45 ++ '[' -z '' ']'
00:47:45 ++ _OLD_VIRTUAL_PS1=
00:47:45 ++ PS1='(.venv3) '
00:47:45 ++ export PS1
00:47:45 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:47:45 ++ export VIRTUAL_ENV_PROMPT
00:47:45 ++ hash -r
00:47:45 + omero admin stop
00:47:46 Waiting on shutdown. Use CTRL-C to exit
00:47:46 .+ sleep 5
00:48:01 + deactivate
00:48:01 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:48:01 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:01 + export PATH
00:48:01 + unset _OLD_VIRTUAL_PATH
00:48:01 + '[' -n '' ']'
00:48:01 + hash -r
00:48:01 + '[' -n '' ']'
00:48:01 + unset VIRTUAL_ENV
00:48:01 + unset VIRTUAL_ENV_PROMPT
00:48:01 + '[' '!' '' = nondestructive ']'
00:48:01 + unset -f deactivate
00:48:01 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:48:02 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:48:05 + '[' false = true ']'
00:48:05 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:48:05 Skipping PURGE_DATA:CleanDbAndRepo
00:48:05 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties /home/omero/workspace/OMERO-server/zarr-java-0.0.5-SNAPSHOT.jar /home/omero/workspace/OMERO-server/zarr-java-0.0.5-SNAPSHOT-javadoc.jar /home/omero/workspace/OMERO-server/zarr-java-0.0.5-SNAPSHOT-sources.jar
00:48:07 Copied 1 artifact from "OMERO-build" build number 551
00:48:07 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 548
00:48:07 Copied 2 artifacts from "OMERO-build-build" build number 582
00:48:07 Copied 4 artifacts from "OMERO-zarr-pixel-buffer-build" build number 92
00:48:07 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14287132272782481720.sh
00:48:07 + source /home/settings.env
00:48:07 ++ OMERO_DB_HOST=pg
00:48:07 ++ OMERO_DB_USER=postgres
00:48:07 ++ OMERO_DB_PASS=
00:48:07 ++ OMERO_ROOT_PASS=omero
00:48:07 ++ OMERO_DATA_DIR=/OMERO
00:48:07 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:48:07 + OMERO_DB_NAME=OMERO-server
00:48:07 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:48:07 + mkdir -p /home/omero/omero-server-data
00:48:07 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:48:07 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:48:07 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:48:07 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:48:07 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:48:07 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:48:07 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:48:07 ++ ls OMERO.server-5.6.3-576-21502ce7bd-ice36-b551.zip
00:48:07 + ZIP=OMERO.server-5.6.3-576-21502ce7bd-ice36-b551.zip
00:48:07 + '[' '!' -z '' ']'
00:48:07 + DIST=OMERO.server-5.6.3-576-21502ce7bd-ice36-b551
00:48:07 + unzip OMERO.server-5.6.3-576-21502ce7bd-ice36-b551.zip
00:48:07 Archive: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551.zip
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/blitz/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/grid/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/profiles/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/error/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/grid/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/luts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/luts/janelia/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/luts/matplotlib/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/luts/ncsa_paledit/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/luts/seaborn/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/luts/wcif/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/omero/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/omero/analysis_scripts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/omero/annotation_scripts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/omero/export_scripts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/omero/figure_scripts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/omero/import_scripts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/scripts/omero/util_scripts/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/server/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/share/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/share/licenses/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/misc/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__1/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__10/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__11/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__2/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__3/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__4/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__5/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__6/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__7/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__8/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3A__9/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3__4/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3__5/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3__6/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO3__7/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO4.1__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO4.2__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO4.2__0/t/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO4.3__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO4.4__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO4__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.0__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.1__1/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.2__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.3__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4DEV__1/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4DEV__2/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4DEV__3/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/
00:48:07 creating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/var/
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/LICENSE.txt
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/backup.cfg
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/blitz/mail-senders.example
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/blitz/mail-server.example
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/build.properties
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/env.bat
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/env.sh
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/hibernate.properties
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/ice.config
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/logback-cli.xml
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/logback-indexing-cli.xml
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/logback-indexing.xml
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/logback.xml
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/mime.types
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/node1.cfg
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/node2.cfg
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/omero.properties
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/profiles/psql
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/rollover.cfg
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/Windows.cfg
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/error/maintainance.html
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/grid/README
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/grid/default.xml
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/grid/templates.xml
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/grid/windefault.xml
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/ice.config
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/internal.cfg
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/master.cfg
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/templates/robot.template
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/etc/testdropbox.config
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/history.rst
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/OMEZarrReader.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/accessors-smart.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/activation.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/aggdesigner-algorithm.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/aircompressor.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/antlr.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/aopalliance.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/apiguardian-api.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/asm.jar
00:48:07 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/avatica-core.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/avatica-metrics.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/aws-java-sdk-core.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/aws-java-sdk-kms.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/aws-java-sdk-s3.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/base.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-anim.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-awt-util.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-bridge.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-codec.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-constants.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-css.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-dom.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-ext.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-gvt.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-i18n.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-parser.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-script.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-shared-resources.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-svg-dom.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-svggen.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-transcoder.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-util.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/batik-xml.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/btm.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/calcite-core.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/calcite-linq4j.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/cdm-core.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/checker-qual.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/commons-beanutils.jar
00:48:08 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/lib/client/commons-codec.jar
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00:48:10 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:48:10 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:48:10 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:48:10 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/psql-footer.sql
00:48:10 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/psql-header.sql
00:48:10 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/schema.sql
00:48:10 inflating: OMERO.server-5.6.3-576-21502ce7bd-ice36-b551/sql/psql/OMERO5.4__0/views.sql
00:48:10 + rm -f OMERO.server-5.6.3-576-21502ce7bd-ice36-b551.zip
00:48:10 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-21502ce7bd-ice36-b551 /home/omero/workspace/OMERO-server/OMERO.server
00:48:10 ++ ls omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar
00:48:10 + JAR=omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar
00:48:10 ++ basename omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar
00:48:10 + JAR_NAME=omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar
00:48:10 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar
00:48:10 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:48:10 --2025-10-17 00:48:10-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:48:10 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:48:10 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:48:10 HTTP request sent, awaiting response... 200 OK
00:48:10 Length: 889211 (868K) [application/java-archive]
00:48:10 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:48:10
00:48:10 0K .......... .......... .......... .......... .......... 5% 26.6M 0s
00:48:10 50K .......... .......... .......... .......... .......... 11% 5.46M 0s
00:48:10 100K .......... .......... .......... .......... .......... 17% 6.65M 0s
00:48:10 150K .......... .......... .......... .......... .......... 23% 28.2M 0s
00:48:10 200K .......... .......... .......... .......... .......... 28% 111M 0s
00:48:10 250K .......... .......... .......... .......... .......... 34% 119M 0s
00:48:10 300K .......... .......... .......... .......... .......... 40% 83.3M 0s
00:48:10 350K .......... .......... .......... .......... .......... 46% 6.85M 0s
00:48:10 400K .......... .......... .......... .......... .......... 51% 102M 0s
00:48:10 450K .......... .......... .......... .......... .......... 57% 68.4M 0s
00:48:10 500K .......... .......... .......... .......... .......... 63% 207M 0s
00:48:10 550K .......... .......... .......... .......... .......... 69% 93.1M 0s
00:48:10 600K .......... .......... .......... .......... .......... 74% 6.59M 0s
00:48:10 650K .......... .......... .......... .......... .......... 80% 225M 0s
00:48:10 700K .......... .......... .......... .......... .......... 86% 64.9M 0s
00:48:10 750K .......... .......... .......... .......... .......... 92% 93.1M 0s
00:48:10 800K .......... .......... .......... .......... .......... 97% 185M 0s
00:48:10 850K .......... ........ 100% 279M=0.04s
00:48:10
00:48:10 2025-10-17 00:48:10 (21.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:48:10
00:48:10 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:48:10 --2025-10-17 00:48:10-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar
00:48:10 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:48:10 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:48:10 HTTP request sent, awaiting response... 200 OK
00:48:10 Length: 73309 (72K) [application/java-archive]
00:48:10 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’
00:48:10
00:48:10 0K .......... .......... .......... .......... .......... 69% 33.9M 0s
00:48:10 50K .......... .......... . 100% 2.70M=0.009s
00:48:10
00:48:10 2025-10-17 00:48:10 (7.56 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309]
00:48:10
00:48:10 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:48:10 --2025-10-17 00:48:10-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar
00:48:10 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:48:10 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:48:11 HTTP request sent, awaiting response... 200 OK
00:48:11 Length: 63303 (62K) [application/java-archive]
00:48:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’
00:48:11
00:48:11 0K .......... .......... .......... .......... .......... 80% 28.7M 0s
00:48:11 50K .......... . 100% 101M=0.002s
00:48:11
00:48:11 2025-10-17 00:48:11 (33.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303]
00:48:11
00:48:11 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:48:11 --2025-10-17 00:48:11-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar
00:48:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:48:11 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:48:11 HTTP request sent, awaiting response... 200 OK
00:48:11 Length: 1271272 (1.2M) [application/java-archive]
00:48:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’
00:48:11
00:48:11 0K .......... .......... .......... .......... .......... 4% 34.0M 0s
00:48:11 50K .......... .......... .......... .......... .......... 8% 5.34M 0s
00:48:11 100K .......... .......... .......... .......... .......... 12% 6.33M 0s
00:48:11 150K .......... .......... .......... .......... .......... 16% 43.0M 0s
00:48:11 200K .......... .......... .......... .......... .......... 20% 168M 0s
00:48:11 250K .......... .......... .......... .......... .......... 24% 96.5M 0s
00:48:11 300K .......... .......... .......... .......... .......... 28% 113M 0s
00:48:11 350K .......... .......... .......... .......... .......... 32% 6.46M 0s
00:48:11 400K .......... .......... .......... .......... .......... 36% 118M 0s
00:48:11 450K .......... .......... .......... .......... .......... 40% 87.1M 0s
00:48:11 500K .......... .......... .......... .......... .......... 44% 376M 0s
00:48:11 550K .......... .......... .......... .......... .......... 48% 101M 0s
00:48:11 600K .......... .......... .......... .......... .......... 52% 6.64M 0s
00:48:11 650K .......... .......... .......... .......... .......... 56% 87.1M 0s
00:48:11 700K .......... .......... .......... .......... .......... 60% 93.8M 0s
00:48:11 750K .......... .......... .......... .......... .......... 64% 370M 0s
00:48:11 800K .......... .......... .......... .......... .......... 68% 78.6M 0s
00:48:11 850K .......... .......... .......... .......... .......... 72% 139M 0s
00:48:11 900K .......... .......... .......... .......... .......... 76% 6.41M 0s
00:48:11 950K .......... .......... .......... .......... .......... 80% 123M 0s
00:48:11 1000K .......... .......... .......... .......... .......... 84% 90.7M 0s
00:48:11 1050K .......... .......... .......... .......... .......... 88% 252M 0s
00:48:11 1100K .......... .......... .......... .......... .......... 92% 8.47M 0s
00:48:11 1150K .......... .......... .......... .......... .......... 96% 19.0M 0s
00:48:11 1200K .......... .......... .......... .......... . 100% 147M=0.06s
00:48:11
00:48:11 2025-10-17 00:48:11 (21.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272]
00:48:11
00:48:11 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:48:11 ++ deactivate nondestructive
00:48:11 ++ '[' -n '' ']'
00:48:11 ++ '[' -n '' ']'
00:48:11 ++ hash -r
00:48:11 ++ '[' -n '' ']'
00:48:11 ++ unset VIRTUAL_ENV
00:48:11 ++ unset VIRTUAL_ENV_PROMPT
00:48:11 ++ '[' '!' nondestructive = nondestructive ']'
00:48:11 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:48:11 ++ export VIRTUAL_ENV
00:48:11 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:11 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:11 ++ export PATH
00:48:11 ++ '[' -n '' ']'
00:48:11 ++ '[' -z '' ']'
00:48:11 ++ _OLD_VIRTUAL_PS1=
00:48:11 ++ PS1='(.venv3) '
00:48:11 ++ export PS1
00:48:11 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:48:11 ++ export VIRTUAL_ENV_PROMPT
00:48:11 ++ hash -r
00:48:11 + pip install -U pip
00:48:11 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:48:11 Collecting pip
00:48:11 Using cached pip-25.2-py3-none-any.whl (1.8 MB)
00:48:11 Installing collected packages: pip
00:48:11 Attempting uninstall: pip
00:48:11 Found existing installation: pip 22.3.1
00:48:12 Uninstalling pip-22.3.1:
00:48:12 Successfully uninstalled pip-22.3.1
00:48:12 Successfully installed pip-25.2
00:48:12 WARNING: There was an error checking the latest version of pip.
00:48:12 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:48:13 Collecting zeroc-ice==3.6.5
00:48:13 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:48:15 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.1 MB/s 0:00:01
00:48:15 Installing collected packages: zeroc-ice
00:48:16 Successfully installed zeroc-ice-3.6.5
00:48:16 + pip install markdown
00:48:16 Collecting markdown
00:48:16 Using cached markdown-3.9-py3-none-any.whl.metadata (5.1 kB)
00:48:16 Using cached markdown-3.9-py3-none-any.whl (107 kB)
00:48:16 Installing collected packages: markdown
00:48:16 Successfully installed markdown-3.9
00:48:16 + pip install reportlab
00:48:17 Collecting reportlab
00:48:17 Using cached reportlab-4.4.4-py3-none-any.whl.metadata (1.7 kB)
00:48:17 Collecting pillow>=9.0.0 (from reportlab)
00:48:17 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:48:17 Collecting charset-normalizer (from reportlab)
00:48:17 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:48:17 Using cached reportlab-4.4.4-py3-none-any.whl (2.0 MB)
00:48:17 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:48:17 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:48:17 Installing collected packages: pillow, charset-normalizer, reportlab
00:48:18
00:48:18 Successfully installed charset-normalizer-3.4.4 pillow-12.0.0 reportlab-4.4.4
00:48:18 + pip install pyarrow
00:48:19 Collecting pyarrow
00:48:19 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB)
00:48:19 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.8 MB)
00:48:19 Installing collected packages: pyarrow
00:48:20 Successfully installed pyarrow-21.0.0
00:48:20 + pip install omego
00:48:21 Collecting omego
00:48:21 Using cached omego-0.7.0-py3-none-any.whl
00:48:21 Collecting future (from omego)
00:48:21 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:48:21 Collecting yaclifw>=0.1.1 (from omego)
00:48:21 Using cached yaclifw-0.2.0-py3-none-any.whl
00:48:21 Collecting six (from yaclifw>=0.1.1->omego)
00:48:21 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:48:21 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:48:21 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:48:21 Installing collected packages: six, future, yaclifw, omego
00:48:21
00:48:21 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:48:21 + pip install tables
00:48:22 Collecting tables
00:48:22 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:48:22 Collecting numpy>=1.20.0 (from tables)
00:48:22 Using cached numpy-2.3.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:48:22 Collecting numexpr>=2.6.2 (from tables)
00:48:22 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:48:22 Collecting packaging (from tables)
00:48:22 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
00:48:22 Collecting py-cpuinfo (from tables)
00:48:22 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:48:22 Collecting blosc2>=2.3.0 (from tables)
00:48:22 Using cached blosc2-3.10.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
00:48:22 Collecting typing-extensions>=4.4.0 (from tables)
00:48:22 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:48:23 Collecting ndindex (from blosc2>=2.3.0->tables)
00:48:23 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
00:48:23 Collecting msgpack (from blosc2>=2.3.0->tables)
00:48:23 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:48:23 Collecting platformdirs (from blosc2>=2.3.0->tables)
00:48:23 Using cached platformdirs-4.5.0-py3-none-any.whl.metadata (12 kB)
00:48:23 Collecting requests (from blosc2>=2.3.0->tables)
00:48:23 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:48:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:48:23 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:48:23 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:48:23 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:48:23 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
00:48:23 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:48:23 Using cached certifi-2025.10.5-py3-none-any.whl.metadata (2.5 kB)
00:48:23 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:48:23 Using cached blosc2-3.10.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
00:48:23 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:48:23 Using cached numpy-2.3.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:48:23 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:48:23 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:48:23 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
00:48:23 Using cached packaging-25.0-py3-none-any.whl (66 kB)
00:48:23 Using cached platformdirs-4.5.0-py3-none-any.whl (18 kB)
00:48:23 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:48:23 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:48:23 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:48:23 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
00:48:23 Using cached certifi-2025.10.5-py3-none-any.whl (163 kB)
00:48:23 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:48:26
00:48:26 Successfully installed blosc2-3.10.2 certifi-2025.10.5 idna-3.11 msgpack-1.1.2 ndindex-1.10.0 numexpr-2.14.1 numpy-2.3.4 packaging-25.0 platformdirs-4.5.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.5.0
00:48:26 + pip install jinja2
00:48:27 Collecting jinja2
00:48:27 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:48:27 Collecting MarkupSafe>=2.0 (from jinja2)
00:48:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:48:27 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:48:27 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:48:27 Installing collected packages: MarkupSafe, jinja2
00:48:27
00:48:27 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:48:27 + pip install zarr
00:48:27 Collecting zarr
00:48:27 Using cached zarr-3.1.3-py3-none-any.whl.metadata (10 kB)
00:48:27 Collecting donfig>=0.8 (from zarr)
00:48:27 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:48:27 Collecting numcodecs>=0.14 (from numcodecs[crc32c]>=0.14->zarr)
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00:48:28 Collecting crc32c>=2.7 (from numcodecs[crc32c]>=0.14->zarr)
00:48:28 Using cached crc32c-2.7.1.post0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
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00:48:28 Using cached crc32c-2.7.1.post0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (78 kB)
00:48:28 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:48:28 Installing collected packages: pyyaml, numcodecs, crc32c, donfig, zarr
00:48:28
00:48:28 Successfully installed crc32c-2.7.1.post0 donfig-0.8.1.post1 numcodecs-0.16.3 pyyaml-6.0.3 zarr-3.1.3
00:48:28 + pip install fsspec requests aiohttp s3fs
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00:48:29 Collecting s3fs
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00:48:30 Collecting multidict<7.0,>=4.5 (from aiohttp)
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00:48:31 Using cached multidict-6.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:48:31 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
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00:48:31 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
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00:48:31 Installing collected packages: wrapt, python-dateutil, propcache, multidict, jmespath, fsspec, frozenlist, attrs, aioitertools, aiohappyeyeballs, yarl, botocore, aiosignal, aiohttp, aiobotocore, s3fs
00:48:33
00:48:33 Successfully installed aiobotocore-2.25.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.0 aioitertools-0.12.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.40.49 frozenlist-1.8.0 fsspec-2025.9.0 jmespath-1.0.1 multidict-6.7.0 propcache-0.4.1 python-dateutil-2.9.0.post0 s3fs-2025.9.0 wrapt-1.17.3 yarl-1.22.0
00:48:33 + pip install omero-py
00:48:33 Collecting omero-py
00:48:33 Using cached omero_py-5.21.2-py3-none-any.whl.metadata (6.5 kB)
00:48:33 Collecting appdirs (from omero-py)
00:48:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:48:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:48:33 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.4)
00:48:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.0.0)
00:48:33 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.3)
00:48:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:48:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:48:33 Collecting portalocker (from omero-py)
00:48:33 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:48:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:48:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:48:33 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.5.0)
00:48:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.10.5)
00:48:33 Using cached omero_py-5.21.2-py3-none-any.whl (2.8 MB)
00:48:33 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:48:33 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:48:33 Installing collected packages: appdirs, portalocker, omero-py
00:48:35
00:48:35 Successfully installed appdirs-1.4.4 omero-py-5.21.2 portalocker-3.2.0
00:48:35 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:48:35 Collecting omero-metadata
00:48:35 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-omin46mw/omero-metadata_7deb723f1f804b83beca68ba023031cf
00:48:35 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-omin46mw/omero-metadata_7deb723f1f804b83beca68ba023031cf
00:48:36 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 414064ed1e8e6000fc8316d2b5825289e88910d9
00:48:36 Installing build dependencies: started
00:48:37 Installing build dependencies: finished with status 'done'
00:48:37 Getting requirements to build wheel: started
00:48:37 Getting requirements to build wheel: finished with status 'done'
00:48:37 Preparing metadata (pyproject.toml): started
00:48:38 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:38 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.2)
00:48:38 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:48:38 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:48:38 Collecting pandas (from omero-metadata)
00:48:38 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
00:48:38 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:48:38 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:48:38 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.4)
00:48:38 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.0.0)
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00:48:38 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:48:38 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:48:38 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:48:38 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0)
00:48:38 Collecting pytz>=2020.1 (from pandas->omero-metadata)
00:48:38 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:48:38 Collecting tzdata>=2022.7 (from pandas->omero-metadata)
00:48:38 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
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00:48:38 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
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00:48:38 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.10.5)
00:48:38 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
00:48:38 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:48:38 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
00:48:38 Building wheels for collected packages: omero-metadata
00:48:38 Building wheel for omero-metadata (pyproject.toml): started
00:48:38 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:48:38 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=56c81d0d7bb1173798ba750f7ea2daa4c060e12001c0319262418d3610da3fd1
00:48:38 Stored in directory: /tmp/pip-ephem-wheel-cache-nijowkp2/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:48:38 Successfully built omero-metadata
00:48:38 Installing collected packages: pytz, tzdata, pandas, omero-metadata
00:48:44
00:48:44 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 pytz-2025.2 tzdata-2025.2
00:48:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:48:45 Collecting omero-cli-render
00:48:45 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-3kx48tu3/omero-cli-render_cbb2c122d5eb45a79e8d9afa2023eb60
00:48:45 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-3kx48tu3/omero-cli-render_cbb2c122d5eb45a79e8d9afa2023eb60
00:48:46 Running command git checkout -b merge_ci --track origin/merge_ci
00:48:46 Switched to a new branch 'merge_ci'
00:48:46 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:48:46 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 471e43fa5efb4f5a8e7d44ee285b462d8b4260e6
00:48:46 Installing build dependencies: started
00:48:47 Installing build dependencies: finished with status 'done'
00:48:47 Getting requirements to build wheel: started
00:48:47 Getting requirements to build wheel: finished with status 'done'
00:48:47 Preparing metadata (pyproject.toml): started
00:48:47 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:47 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:48:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.2)
00:48:47 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:48:47 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:48:47 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.4)
00:48:47 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.0.0)
00:48:47 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:48:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:48:47 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:48:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:48:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:48:47 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.5.0)
00:48:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.10.5)
00:48:47 Building wheels for collected packages: omero-cli-render
00:48:47 Building wheel for omero-cli-render (pyproject.toml): started
00:48:47 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:48:47 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=51f206fec9fa58fcdee2e5ed206bfe4536f0f80c88c3dd831538e6395faa3200
00:48:47 Stored in directory: /tmp/pip-ephem-wheel-cache-ffkv2ov7/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:48:48 Successfully built omero-cli-render
00:48:48 Installing collected packages: omero-cli-render
00:48:48 Successfully installed omero-cli-render-0.8.2.dev0
00:48:48 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:48:48 Collecting omero-cli-duplicate
00:48:48 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-1cngipgh/omero-cli-duplicate_0caaefa50783467285dcd1fb02c240f2
00:48:48 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-1cngipgh/omero-cli-duplicate_0caaefa50783467285dcd1fb02c240f2
00:48:49 Running command git checkout -b merge_ci --track origin/merge_ci
00:48:49 Switched to a new branch 'merge_ci'
00:48:49 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:48:49 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 016ca9de009047ee15ae50236ecfdef64845f9b7
00:48:49 Installing build dependencies: started
00:48:50 Installing build dependencies: finished with status 'done'
00:48:50 Getting requirements to build wheel: started
00:48:50 Getting requirements to build wheel: finished with status 'done'
00:48:50 Preparing metadata (pyproject.toml): started
00:48:51 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:51 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.2)
00:48:51 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:48:51 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:48:51 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.4)
00:48:51 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.0.0)
00:48:51 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:48:51 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:48:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:48:51 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:48:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:48:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:48:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.5.0)
00:48:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.10.5)
00:48:51 Building wheels for collected packages: omero-cli-duplicate
00:48:51 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:48:51 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:48:51 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=270f891ec2d7e12f7742fe9dac604d720808c26095d44d98167433806f95dd5c
00:48:51 Stored in directory: /tmp/pip-ephem-wheel-cache-3vkiimpl/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:48:51 Successfully built omero-cli-duplicate
00:48:51 Installing collected packages: omero-cli-duplicate
00:48:51 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:48:51 + pip install omero-certificates
00:48:52 Collecting omero-certificates
00:48:52 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:48:52 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.2)
00:48:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:48:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:48:52 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.4)
00:48:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.0.0)
00:48:52 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:48:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:48:52 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:48:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:48:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:48:52 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:48:52 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.5.0)
00:48:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.10.5)
00:48:52 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:48:52 Installing collected packages: omero-certificates
00:48:52 Successfully installed omero-certificates-0.4.0
00:48:52 + for x in *.tar.gz
00:48:52 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:48:52 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:48:52 Installing build dependencies: started
00:48:53 Installing build dependencies: finished with status 'done'
00:48:53 Getting requirements to build wheel: started
00:48:53 Getting requirements to build wheel: finished with status 'done'
00:48:53 Preparing metadata (pyproject.toml): started
00:48:53 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:53 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.2)
00:48:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:48:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:48:53 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.4)
00:48:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.0.0)
00:48:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:48:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:48:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:48:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:48:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:48:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:48:53 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.5.0)
00:48:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.10.5)
00:48:53 Building wheels for collected packages: omero-dropbox
00:48:53 Building wheel for omero-dropbox (pyproject.toml): started
00:48:54 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:48:54 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=b8f76802e021b835b22247fe63502f346e5fd57cd4cadc474cfe0b549aadf2c2
00:48:54 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:48:54 Successfully built omero-dropbox
00:48:54 Installing collected packages: omero-dropbox
00:48:54 Successfully installed omero-dropbox-5.7.1.dev0
00:48:54 + for x in *.tar.gz
00:48:54 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
00:48:54 Processing ./omero_marshal-0.9.1.dev0.tar.gz
00:48:54 Installing build dependencies: started
00:48:55 Installing build dependencies: finished with status 'done'
00:48:55 Getting requirements to build wheel: started
00:48:55 Getting requirements to build wheel: finished with status 'done'
00:48:55 Preparing metadata (pyproject.toml): started
00:48:56 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:56 Building wheels for collected packages: omero_marshal
00:48:56 Building wheel for omero_marshal (pyproject.toml): started
00:48:56 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:48:56 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88121 sha256=6212c1844c1a2af9131289fc9261311e7d691195a8405c2cd6ede3ad6cd5d7d1
00:48:56 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18
00:48:56 Successfully built omero_marshal
00:48:56 Installing collected packages: omero_marshal
00:48:56 Successfully installed omero_marshal-0.9.1.dev0
00:48:56 + for x in *.tar.gz
00:48:56 + pip install -U omero_py-5.21.3.dev0.tar.gz
00:48:57 Processing ./omero_py-5.21.3.dev0.tar.gz
00:48:57 Installing build dependencies: started
00:48:58 Installing build dependencies: finished with status 'done'
00:48:58 Getting requirements to build wheel: started
00:48:58 Getting requirements to build wheel: finished with status 'done'
00:48:58 Preparing metadata (pyproject.toml): started
00:48:58 Preparing metadata (pyproject.toml): finished with status 'done'
00:48:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (1.4.4)
00:48:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (1.0.0)
00:48:58 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (2.3.4)
00:48:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (12.0.0)
00:48:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (6.0.3)
00:48:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (3.6.5)
00:48:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (2.32.5)
00:48:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (3.2.0)
00:48:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (3.4.4)
00:48:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (3.11)
00:48:58 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (2.5.0)
00:48:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (2025.10.5)
00:48:58 Building wheels for collected packages: omero-py
00:48:58 Building wheel for omero-py (pyproject.toml): started
00:48:59 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:48:59 Created wheel for omero-py: filename=omero_py-5.21.3.dev0-py3-none-any.whl size=2785643 sha256=91281cd86e2c376bd607b503562939b6aa10da5d1bcf345835d9fb435b8d2d89
00:48:59 Stored in directory: /home/omero/.cache/pip/wheels/b2/c3/69/7f46e8715cbcb96e4ea5a88612191cc747a1c318af7c8f681c
00:48:59 Successfully built omero-py
00:48:59 Installing collected packages: omero-py
00:48:59 Attempting uninstall: omero-py
00:48:59 Found existing installation: omero-py 5.21.2
00:49:00 Uninstalling omero-py-5.21.2:
00:49:00 Successfully uninstalled omero-py-5.21.2
00:49:02 Successfully installed omero-py-5.21.3.dev0
00:49:02 + for x in *.tar.gz
00:49:02 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
00:49:02 Processing ./omero_scripts-5.9.2.dev0.tar.gz
00:49:02 Installing build dependencies: started
00:49:03 Installing build dependencies: finished with status 'done'
00:49:03 Getting requirements to build wheel: started
00:49:03 Getting requirements to build wheel: finished with status 'done'
00:49:03 Preparing metadata (pyproject.toml): started
00:49:03 Preparing metadata (pyproject.toml): finished with status 'done'
00:49:03 Building wheels for collected packages: omero-scripts
00:49:03 Building wheel for omero-scripts (pyproject.toml): started
00:49:04 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:49:04 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=761e902a971163435e1257fd11705f59e6a89fc68c8d7753d0f587bcfc07ef65
00:49:04 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850
00:49:04 Successfully built omero-scripts
00:49:04 Installing collected packages: omero-scripts
00:49:04 Successfully installed omero-scripts-5.9.2.dev0
00:49:04 + for x in *.tar.gz
00:49:04 + pip install -U omero_web-5.29.3.dev0.tar.gz
00:49:04 Processing ./omero_web-5.29.3.dev0.tar.gz
00:49:05 Installing build dependencies: started
00:49:05 Installing build dependencies: finished with status 'done'
00:49:05 Getting requirements to build wheel: started
00:49:06 Getting requirements to build wheel: finished with status 'done'
00:49:06 Preparing metadata (pyproject.toml): started
00:49:06 Preparing metadata (pyproject.toml): finished with status 'done'
00:49:06 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (5.21.3.dev0)
00:49:06 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.3.dev0)
00:49:06 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:49:06 Collecting Django<5.3,>=5.2.7 (from omero-web==5.29.3.dev0)
00:49:06 Using cached django-5.2.7-py3-none-any.whl.metadata (4.1 kB)
00:49:06 Collecting django-pipeline (from omero-web==5.29.3.dev0)
00:49:06 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:49:06 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.3.dev0)
00:49:06 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:49:06 Collecting django-csp (from omero-web==5.29.3.dev0)
00:49:06 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
00:49:06 Collecting whitenoise>=5.3.0 (from omero-web==5.29.3.dev0)
00:49:06 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:49:06 Collecting gunicorn>=19.3 (from omero-web==5.29.3.dev0)
00:49:06 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
00:49:06 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (0.9.1.dev0)
00:49:06 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (12.0.0)
00:49:06 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (2025.2)
00:49:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (3.2.0)
00:49:06 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (25.0)
00:49:06 Collecting importlib-resources (from omero-web==5.29.3.dev0)
00:49:06 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:49:06 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.7->omero-web==5.29.3.dev0)
00:49:06 Using cached asgiref-3.10.0-py3-none-any.whl.metadata (9.3 kB)
00:49:06 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.7->omero-web==5.29.3.dev0)
00:49:06 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
00:49:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (1.4.4)
00:49:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (1.0.0)
00:49:07 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.3.4)
00:49:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (6.0.3)
00:49:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.6.5)
00:49:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.32.5)
00:49:07 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.3.dev0) (65.5.1)
00:49:07 Collecting wheel (from django-pipeline->omero-web==5.29.3.dev0)
00:49:07 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
00:49:07 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.4.4)
00:49:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.11)
00:49:07 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.5.0)
00:49:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (2025.10.5)
00:49:07 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:49:07 Using cached django-5.2.7-py3-none-any.whl (8.3 MB)
00:49:07 Using cached asgiref-3.10.0-py3-none-any.whl (24 kB)
00:49:07 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:49:07 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
00:49:07 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
00:49:07 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:49:07 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
00:49:07 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:49:07 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:49:07 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
00:49:07 Building wheels for collected packages: omero-web
00:49:07 Building wheel for omero-web (pyproject.toml): started
00:49:08 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:49:08 Created wheel for omero-web: filename=omero_web-5.29.3.dev0-py3-none-any.whl size=2818201 sha256=83adafbf74f6a58ac56008781f4199d2f009d1fab4c8e4bd13dfbfd22b2ecd24
00:49:08 Stored in directory: /home/omero/.cache/pip/wheels/22/5c/22/7feca3b3e1a26ce9fb6b16848ce79640a0079788b3a7d5450b
00:49:08 Successfully built omero-web
00:49:08 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
00:49:10
00:49:10 Successfully installed Django-5.2.7 asgiref-3.10.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.3.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.11.0
00:49:10 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:49:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:49:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:49:10 --2025-10-17 00:49:10-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:49:11 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ...
00:49:11 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected.
00:49:11 HTTP request sent, awaiting response... 200 OK
00:49:11 Length: 125361 (122K) [text/plain]
00:49:11 Saving to: ‘Figure_To_Pdf.py’
00:49:11
00:49:11 0K .......... .......... .......... .......... .......... 40% 4.01M 0s
00:49:11 50K .......... .......... .......... .......... .......... 81% 11.7M 0s
00:49:11 100K .......... .......... .. 100% 4.37M=0.02s
00:49:11
00:49:11 2025-10-17 00:49:11 (5.60 MB/s) - ‘Figure_To_Pdf.py’ saved [125361/125361]
00:49:11
00:49:11 + chmod 755 Figure_To_Pdf.py
00:49:11 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:49:11 + omero config set omero.db.name OMERO-server
00:49:12 + omero config set omero.db.host pg
00:49:13 + omero config set omero.db.user postgres
00:49:14 + omero config set omero.data.dir /home/omero/omero-server-data
00:49:16 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:49:17 + omero config set omero.db.poolsize 25
00:49:18 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:49:19 + omero config set omero.security.trustStorePassword changeit
00:49:21 + omero config set omero.mail.config true
00:49:22 + omero config set omero.mail.from qa@openmicroscopy.org.uk
00:49:23 + omero config set omero.mail.host smtp.dundee.ac.uk
00:49:24 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:49:26 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:49:27 + omero certificates
00:49:28 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
00:49:28 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:49:28 + '[' false = true ']'
00:49:28 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:49:28 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:49:28 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:49:28 2025-10-17 00:49:28,794 [ omego.db] DEBUG dbcommand => upgrade
00:49:28 2025-10-17 00:49:28,794 [ omego.db] DEBUG dbhost => localhost
00:49:28 2025-10-17 00:49:28,794 [ omego.db] DEBUG dbname => OMERO-server
00:49:28 2025-10-17 00:49:28,794 [ omego.db] DEBUG dbpass => omero
00:49:28 2025-10-17 00:49:28,794 [ omego.db] DEBUG dbuser => omero
00:49:28 2025-10-17 00:49:28,794 [ omego.db] DEBUG rootpass => omero
00:49:28 2025-10-17 00:49:28,794 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:49:28 2025-10-17 00:49:28,794 [omego.extern] INFO Executing : omero version
00:49:29 OMERO.py version:
00:49:29 OMERO.server version:
00:49:29 5.6.3-576-21502ce7bd-ice36-b551
00:49:29 5.21.3.dev0
00:49:30 2025-10-17 00:49:30,089 [omego.extern] INFO Completed [1.294 s]
00:49:30 2025-10-17 00:49:30,089 [omego.extern] DEBUG Using omero CLI from omero
00:49:30 2025-10-17 00:49:30,089 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:49:30 2025-10-17 00:49:30,089 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:49:30 2025-10-17 00:49:30,089 [omego.extern] INFO Executing : omero config get --show-password
00:49:31 2025-10-17 00:49:31,324 [omego.extern] INFO Completed [1.234 s]
00:49:31 2025-10-17 00:49:31,324 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:49:31 2025-10-17 00:49:31,324 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:49:31 2025-10-17 00:49:31,329 [omego.extern] INFO Completed [0.005 s]
00:49:31 2025-10-17 00:49:31,329 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n'
00:49:31 2025-10-17 00:49:31,329 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9
00:49:31
00:49:31 2025-10-17 00:49:31,329 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:49:31 2025-10-17 00:49:31,329 [omego.extern] INFO Executing : omero config get --show-password
00:49:32 2025-10-17 00:49:32,561 [omego.extern] INFO Completed [1.231 s]
00:49:32 2025-10-17 00:49:32,561 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:49:32 2025-10-17 00:49:32,561 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:49:32 2025-10-17 00:49:32,570 [omego.extern] INFO Completed [0.009 s]
00:49:32 2025-10-17 00:49:32,570 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
00:49:32 2025-10-17 00:49:32,570 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:49:32 2025-10-17 00:49:32,570 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:49:32 2025-10-17 00:49:32,570 [omego.extern] INFO Executing : omero config get --show-password
00:49:33 2025-10-17 00:49:33,777 [omego.extern] INFO Completed [1.207 s]
00:49:33 2025-10-17 00:49:33,777 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:49:33 2025-10-17 00:49:33,777 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:49:33 2025-10-17 00:49:33,787 [omego.extern] INFO Completed [0.010 s]
00:49:33 2025-10-17 00:49:33,787 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:49:33 2025-10-17 00:49:33,787 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:49:33 2025-10-17 00:49:33,789 [ omego.db] INFO Database is already at OMERO5.4__0
00:49:33 + export LANG=en_US.UTF-8
00:49:33 + LANG=en_US.UTF-8
00:49:33 + export LANGUAGE=en_US:en
00:49:33 + LANGUAGE=en_US:en
00:49:33 + export LC_ALL=en_US.UTF-8
00:49:33 + LC_ALL=en_US.UTF-8
00:49:33 + BUILD_ID=DONT_KILL_ME
00:49:33 + omero admin start
00:49:38 No descriptor given. Using etc/grid/default.xml
00:49:47 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:49:47 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:49:47 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:49:47 Waiting on startup. Use CTRL-C to exit
00:49:47 + omero admin waitup
00:49:48 Waiting on startup. Use CTRL-C to exit
00:49:48 + omero admin diagnostics
00:49:50
00:49:50 ================================================================================
00:49:50 OMERO Diagnostics (admin)
00:49:50 ================================================================================
00:49:50
00:49:50 Commands: java -version 11.0.25 (/usr/bin/java)
00:49:50 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:49:50 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:49:50 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:49:50 Commands: psql --version 16.9 (/usr/bin/psql)
00:49:50 Commands: openssl version 3.2.24 (/usr/bin/openssl)
00:49:50
00:49:50 Component: OMERO.py 5.21.3.dev0
00:49:50 Component: OMERO.server 5.6.3-576-21502ce7bd-ice36-b551
00:49:50
00:49:50 Server: icegridnode running
00:49:50 Server: Blitz-0 active (pid = 28958, enabled)
00:49:50 Server: Indexer-0 activating (enabled)
00:49:50 Server: OMERO.Glacier2 active (pid = 28989, enabled)
00:49:50 Server: OMERO.IceStorm active (pid = 28996, enabled)
00:49:50 Server: Processor-0 active (pid = 29012, enabled)
00:49:50 Server: Tables-0 active (pid = 29027, enabled)
00:49:50
00:49:50 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:49:50 Log files: Blitz-0.log 33.1 KB errors=0 warnings=1
00:49:50 Log files: DropBox.log n/a
00:49:50 Log files: FileServer.log n/a
00:49:50 Log files: Indexer-0.log 238 B
00:49:50 Log files: MonitorServer.log n/a
00:49:50 Log files: Processor-0.log 735 B
00:49:50 Log files: Tables-0.log 961 B
00:49:50 Log files: TestDropBox.log n/a
00:49:50 Log files: master.err empty
00:49:50 Log files: master.out 30.5 KB
00:49:50 Log files: Total size 0.07 MB
00:49:50
00:49:50
00:49:50 Environment:OMERO_HOME=(unset)
00:49:50 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:49:50 Environment:OMERO_NODE=(unset)
00:49:50 Environment:OMERO_MASTER=(unset)
00:49:50 Environment:OMERO_USERDIR=(unset)
00:49:50 Environment:OMERO_TMPDIR=(unset)
00:49:50 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:49:50 Environment:PYTHONPATH=(unset)
00:49:50 Environment:ICE_HOME=/opt/ice-3.6.5
00:49:50 Environment:LD_LIBRARY_PATH=(unset)
00:49:50 Environment:DYLD_LIBRARY_PATH=(unset)
00:49:50
00:49:50 OMERO SSL port:4064
00:49:50 OMERO TCP port:4063
00:49:50 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:49:50 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:49:50
00:49:50 JVM settings: Blitz-${index} -Xmx7200m
00:49:50 JVM settings: Indexer-${index} -Xmx4800m
00:49:50 JVM settings: PixelData-${index} -Xmx7200m
00:49:50 JVM settings: Repository-${index} -Xmx4800m
00:49:50
00:49:50 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 17 October 2025 ae9333a8d53d48b9a226db9de72e6dd161962a42
00:49:50 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 17 October 2025 ae9333a8d53d48b9a226db9de72e6dd161962a42
00:49:50 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 17 October 2025 ae9333a8d53d48b9a226db9de72e6dd161962a42
00:49:50 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 17 October 2025 ae4d840fcb3443ef1a67e79ad858a443d62c3a27
00:49:50 Jar: lib/server/ome-common.jar OME Common Java 6.1.1-SNAPSHOT 17 October 2025 ae4d840fcb3443ef1a67e79ad858a443d62c3a27
00:49:50 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 17 October 2025 ae4d840fcb3443ef1a67e79ad858a443d62c3a27
00:49:50 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 17 October 2025 ae4d840fcb3443ef1a67e79ad858a443d62c3a27
00:49:50 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 17 October 2025 ae4d840fcb3443ef1a67e79ad858a443d62c3a27
00:49:50 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 17 October 2025 ae4d840fcb3443ef1a67e79ad858a443d62c3a27
00:49:50 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
00:49:50 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
00:49:50 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT
00:49:50 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
00:49:50 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
00:49:50 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
00:49:50 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
00:49:50 Jar: lib/server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.0-SNAPSHOT 4b869f82e166da74d4e409f49adc6aa7892c2c72
00:49:50 + deactivate
00:49:50 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:49:50 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:49:50 + export PATH
00:49:50 + unset _OLD_VIRTUAL_PATH
00:49:50 + '[' -n '' ']'
00:49:50 + hash -r
00:49:50 + '[' -n '' ']'
00:49:50 + unset VIRTUAL_ENV
00:49:50 + unset VIRTUAL_ENV_PROMPT
00:49:50 + '[' '!' '' = nondestructive ']'
00:49:50 + unset -f deactivate
00:49:50 Finished: SUCCESS
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