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15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/ncsa_paledit/thallium.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/ncsa_paledit/unionjack.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/physics.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/red-green.lut
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/seaborn/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/seaborn/mako.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/seaborn/rocket.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/spectrum.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/thermal.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/turbo.lut
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/cyan_hot.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/green_fire_blue.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/hilo.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/ica.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/ica2.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/ica3.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/magenta_hot.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/orange_hot.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/rainbow_rgb.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/red_hot.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/luts/wcif/yellow_hot.lut
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/omero.class
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/setup.cfg
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/README.txt
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/Makefile
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/current.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/misc/enums.py
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__1/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__1/OMERO3__7.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__10/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__10/OMERO3A__9.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__11/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__11/OMERO3A__10.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__11/OMERO3A__5.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__2/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__2/OMERO3A__1.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__3/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__3/OMERO3A__2.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__3/OMERO3__5.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__4/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__4/OMERO3A__3.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__4/OMERO3__5.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__5/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__5/OMERO3A__4.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__6/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__6/OMERO3A__5.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__7/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__7/OMERO3A__6.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__8/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__8/OMERO3A__6.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__9/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3A__9/OMERO3A__8.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__4/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__4/OMERO3__1.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__5/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__5/OMERO3__4.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__6/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__6/OMERO3__5.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__7/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO3__7/OMERO3__6.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.1__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.1__0/OMERO4__0.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/t/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.3__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.4__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO4__0/OMERO3A__11.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__1/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__2/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__3/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
15:22:45 creating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/psql-footer.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/psql-header.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/schema.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/sql/psql/OMERO5.4__0/views.sql
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/test.xml
15:22:45 inflating: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/update_dependencies.sh
15:22:45 extracting: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/components/antlib/resources/gitversion.xml
15:22:45 extracting: openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364/components/tools/OmeroCpp/cmake/GitVersion.cmake
15:22:45 + rm -f openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364.zip
15:22:45 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-546-563cb21b2c-ice36-b364 /home/omero/workspace/OMERO-test-integration/src
15:22:45 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
15:22:45 ++ deactivate nondestructive
15:22:45 ++ '[' -n '' ']'
15:22:45 ++ '[' -n '' ']'
15:22:45 ++ hash -r
15:22:45 ++ '[' -n '' ']'
15:22:45 ++ unset VIRTUAL_ENV
15:22:45 ++ unset VIRTUAL_ENV_PROMPT
15:22:45 ++ '[' '!' nondestructive = nondestructive ']'
15:22:45 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
15:22:45 ++ export VIRTUAL_ENV
15:22:45 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:22:45 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:22:45 ++ export PATH
15:22:45 ++ '[' -n '' ']'
15:22:45 ++ '[' -z '' ']'
15:22:45 ++ _OLD_VIRTUAL_PS1=
15:22:45 ++ PS1='(.venv3) '
15:22:45 ++ export PS1
15:22:45 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
15:22:45 ++ export VIRTUAL_ENV_PROMPT
15:22:45 ++ hash -r
15:22:45 + for x in *.tar.gz
15:22:45 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
15:22:46 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
15:22:46 Preparing metadata (setup.py): started
15:22:46 Preparing metadata (setup.py): finished with status 'done'
15:22:46 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.8)
15:22:46 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
15:22:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
15:22:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
15:22:46 Requirement already satisfied: numpy<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4)
15:22:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.1.0)
15:22:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
15:22:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
15:22:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3)
15:22:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
15:22:46 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.1)
15:22:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
15:22:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.1.31)
15:22:46 Building wheels for collected packages: omero-dropbox
15:22:46 Building wheel for omero-dropbox (setup.py): started
15:22:46 Building wheel for omero-dropbox (setup.py): finished with status 'done'
15:22:46 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49141 sha256=657beb3f1f0e27a7d0e60dae185ed57b1940722a190fadf1bc47ea04dea979dc
15:22:46 Stored in directory: /home/omero/.cache/pip/wheels/fc/7e/62/5e5d34b5de7cc5d8ff95a6620b111f491c603301cfe622e998
15:22:46 Successfully built omero-dropbox
15:22:46 Installing collected packages: omero-dropbox
15:22:46 Successfully installed omero-dropbox-5.7.1.dev0
15:22:46 + for x in *.tar.gz
15:22:46 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
15:22:47 Processing ./omero_marshal-0.9.1.dev0.tar.gz
15:22:47 Preparing metadata (setup.py): started
15:22:47 Preparing metadata (setup.py): finished with status 'done'
15:22:47 Building wheels for collected packages: omero_marshal
15:22:47 Building wheel for omero_marshal (setup.py): started
15:22:48 Building wheel for omero_marshal (setup.py): finished with status 'done'
15:22:48 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88125 sha256=07cf0c00333191bb984659043b4815288925340d334b999e43cf0c769d9d4656
15:22:48 Stored in directory: /home/omero/.cache/pip/wheels/fc/98/9c/69cdded6f57ef54b3c96947408fa8d97cfb20a9f1ce1e42dfd
15:22:48 Successfully built omero_marshal
15:22:48 Installing collected packages: omero_marshal
15:22:48 Attempting uninstall: omero_marshal
15:22:48 Found existing installation: omero-marshal 0.9.0
15:22:48 Uninstalling omero-marshal-0.9.0:
15:22:48 Successfully uninstalled omero-marshal-0.9.0
15:22:48 Successfully installed omero_marshal-0.9.1.dev0
15:22:48 + for x in *.tar.gz
15:22:48 + pip install -U omero_py-5.19.7.dev0.tar.gz
15:22:48 Processing ./omero_py-5.19.7.dev0.tar.gz
15:22:49 Preparing metadata (setup.py): started
15:22:49 Preparing metadata (setup.py): finished with status 'done'
15:22:49 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (1.26.20)
15:22:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (1.4.4)
15:22:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (1.0.0)
15:22:49 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (1.26.4)
15:22:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (11.1.0)
15:22:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (6.0.2)
15:22:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (3.6.5)
15:22:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (2.32.3)
15:22:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.19.8) (3.1.1)
15:22:49 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.19.8) (3.4.1)
15:22:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.19.8) (3.10)
15:22:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.19.8) (2025.1.31)
15:22:49 Building wheels for collected packages: omero-py
15:22:49 Building wheel for omero-py (setup.py): started
15:22:50 Building wheel for omero-py (setup.py): finished with status 'done'
15:22:50 Created wheel for omero-py: filename=omero_py-5.19.8-py3-none-any.whl size=2783144 sha256=759a57189b3e8130f237d65d60e88be046759a474f989f0f38ab757a18b87f8d
15:22:50 Stored in directory: /home/omero/.cache/pip/wheels/f4/91/cf/b10eafb54d687b0372b56071dc88daa092e4da326a2f3939f1
15:22:50 Successfully built omero-py
15:22:50 Installing collected packages: omero-py
15:22:50 Attempting uninstall: omero-py
15:22:50 Found existing installation: omero-py 5.19.8
15:22:50 Uninstalling omero-py-5.19.8:
15:22:51 Successfully uninstalled omero-py-5.19.8
15:22:53 Successfully installed omero-py-5.19.8
15:22:53 + for x in *.tar.gz
15:22:53 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
15:22:53 Processing ./omero_scripts-5.9.1.dev0.tar.gz
15:22:53 Preparing metadata (setup.py): started
15:22:53 Preparing metadata (setup.py): finished with status 'done'
15:22:53 Building wheels for collected packages: omero-scripts
15:22:53 Building wheel for omero-scripts (setup.py): started
15:22:54 Building wheel for omero-scripts (setup.py): finished with status 'done'
15:22:54 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=fd4eeceb69645f1a96d3eed427e9f490204d0dc2ec42ba18ec216d4684b86d36
15:22:54 Stored in directory: /home/omero/.cache/pip/wheels/20/22/0f/eb568aab87da8b1d7cb2cb16316e8e8ca7b0973feba3824ff1
15:22:54 Successfully built omero-scripts
15:22:54 Installing collected packages: omero-scripts
15:22:54 Successfully installed omero-scripts-5.9.1.dev0
15:22:54 + for x in *.tar.gz
15:22:54 + pip install -U omero_web-5.29.1.dev0.tar.gz
15:22:54 Processing ./omero_web-5.29.1.dev0.tar.gz
15:22:55 Preparing metadata (setup.py): started
15:22:55 Preparing metadata (setup.py): finished with status 'done'
15:22:55 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.19.8)
15:22:55 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.25)
15:22:55 Requirement already satisfied: Django<4.3,>=4.2.3 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (4.2.20)
15:22:55 Requirement already satisfied: django-pipeline in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (4.0.0)
15:22:55 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.7.0)
15:22:55 Collecting django-csp (from omero-web==5.29.1.dev0)
15:22:55 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB)
15:22:55 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (6.9.0)
15:22:55 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (23.0.0)
15:22:55 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
15:22:55 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.1.0)
15:22:55 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2)
15:22:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
15:22:55 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (24.2)
15:22:55 Requirement already satisfied: importlib-resources in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (6.5.2)
15:22:55 Requirement already satisfied: asgiref<4,>=3.6.0 in ./.venv3/lib64/python3.11/site-packages (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) (3.8.1)
15:22:55 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib64/python3.11/site-packages (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) (0.5.3)
15:22:55 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
15:22:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
15:22:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
15:22:55 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.4)
15:22:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
15:22:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
15:22:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.3)
15:22:55 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (78.1.0)
15:22:55 Requirement already satisfied: wheel in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (0.45.1)
15:22:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.1)
15:22:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
15:22:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.1.31)
15:22:55 Using cached django_csp-3.8-py3-none-any.whl (17 kB)
15:22:55 Building wheels for collected packages: omero-web
15:22:55 Building wheel for omero-web (setup.py): started
15:22:57 Building wheel for omero-web (setup.py): finished with status 'done'
15:22:57 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817949 sha256=bdf143456e5608aa745a757c92bfc95a0a702fd366037b2c614dd445c81f602d
15:22:57 Stored in directory: /home/omero/.cache/pip/wheels/95/02/59/a43562e01865bb056837672b6bdeb175a8375c75603af7ba53
15:22:57 Successfully built omero-web
15:22:57 Installing collected packages: django-csp, omero-web
15:22:57 Attempting uninstall: omero-web
15:22:57 Found existing installation: omero-web 5.29.0
15:22:57 Uninstalling omero-web-5.29.0:
15:22:57 Successfully uninstalled omero-web-5.29.0
15:22:57 Successfully installed django-csp-3.8 omero-web-5.29.1.dev0
15:22:57 + pip install omero-certificates
15:22:58 Collecting omero-certificates
15:22:58 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
15:22:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.19.8)
15:22:58 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
15:22:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
15:22:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
15:22:58 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4)
15:22:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.1.0)
15:22:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
15:22:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
15:22:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3)
15:22:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
15:22:58 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.1)
15:22:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
15:22:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.1.31)
15:22:58 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
15:22:58 Installing collected packages: omero-certificates
15:22:58 Successfully installed omero-certificates-0.4.0
15:22:58 + for x in omero-cli-duplicate
15:22:58 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
15:22:58 Collecting omero-cli-duplicate
15:22:58 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-nx5zcjz4/omero-cli-duplicate_92d4906c80f2489baa0c3344d036801e
15:22:58 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-nx5zcjz4/omero-cli-duplicate_92d4906c80f2489baa0c3344d036801e
15:23:00 Running command git checkout -b merge_ci --track origin/merge_ci
15:23:00 Switched to a new branch 'merge_ci'
15:23:00 branch 'merge_ci' set up to track 'origin/merge_ci'.
15:23:00 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 87e4661edd3fd9db4f6c3476fce4d3e9d0f9a6eb
15:23:00 Preparing metadata (setup.py): started
15:23:00 Preparing metadata (setup.py): finished with status 'done'
15:23:00 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.19.8)
15:23:00 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
15:23:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
15:23:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
15:23:00 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4)
15:23:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.1.0)
15:23:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
15:23:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
15:23:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3)
15:23:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
15:23:00 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.1)
15:23:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
15:23:00 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.1.31)
15:23:00 Building wheels for collected packages: omero-cli-duplicate
15:23:00 Building wheel for omero-cli-duplicate (setup.py): started
15:23:00 Building wheel for omero-cli-duplicate (setup.py): finished with status 'done'
15:23:00 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=35c48998a49af08c88160482c0f0c43032d87997895b3603749654711921dd80
15:23:00 Stored in directory: /tmp/pip-ephem-wheel-cache-tvmnj_qt/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
15:23:00 Successfully built omero-cli-duplicate
15:23:01 Installing collected packages: omero-cli-duplicate
15:23:01 Successfully installed omero-cli-duplicate-0.4.1.dev0
15:23:01 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
15:23:01 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
15:23:01 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
15:23:01 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
15:23:01
15:23:01 check-ivy:
15:23:01 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
15:23:01 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
15:23:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:23:01 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:23:02
15:23:02 build-scons:
15:23:02 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
15:23:02
15:23:02 build:
15:23:02 No sub-builds to iterate on
15:23:02 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
15:23:02 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
15:23:02 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
15:23:02 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
15:23:02
15:23:02 tools-init:
15:23:02 no-op
15:23:02
15:23:02 retrieve:
15:23:02 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:23:02 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:23:03 WARNING: An illegal reflective access operation has occurred
15:23:03 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-test-integration/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
15:23:03 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
15:23:03 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
15:23:03 WARNING: All illegal access operations will be denied in a future release
15:23:33
15:23:33 prepare:
15:23:33 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
15:23:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
15:23:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
15:23:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
15:23:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
15:23:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
15:23:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
15:23:33 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
15:23:33
15:23:33 pre-compile:
15:23:33 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
15:23:33 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
15:23:33 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
15:23:33 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
15:23:33 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
15:23:33
15:23:33 compile:
15:23:33 no-op
15:23:33
15:23:33 package:
15:23:33 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
15:23:34
15:23:34 install:
15:23:34 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-546-563cb21b2c-ice36-b364-ice36 :: integration :: Fri Mar 28 15:23:02 UTC 2025
15:23:34 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
15:23:34 :: publishing :: omero#omero_client
15:23:34 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-546-563cb21b2c-ice36-b364-ice36/omero_client-5.6.3-546-563cb21b2c-ice36-b364-ice36.jar
15:23:34 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-546-563cb21b2c-ice36-b364-ice36/omero_client-5.6.3-546-563cb21b2c-ice36-b364-ice36.xml
15:23:34 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
15:23:34 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
15:23:34
15:23:34 retrieve:
15:23:34 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:23:34 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:23:35 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
15:23:35
15:23:35 dist:
15:23:35 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
15:23:35 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
15:23:35 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
15:23:35 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
15:23:35 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
15:23:35 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/dist
15:23:35 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
15:23:35 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
15:23:35 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
15:23:35
15:23:35 copy-licenses:
15:23:35 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
15:23:35 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
15:23:35 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
15:23:35
15:23:35 copy-history:
15:23:35 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
15:23:35
15:23:35 copy-etc:
15:23:35 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
15:23:35 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
15:23:35
15:23:35 copy-sql:
15:23:35 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
15:23:39
15:23:39 copy-server:
15:23:39 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.0.11 won
15:23:39
15:23:39 copy-client:
15:23:39 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
15:23:40 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.0.11 won
15:23:40
15:23:40 update-version:
15:23:40 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
15:23:40
15:23:40 create-workdirs:
15:23:40 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
15:23:40 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
15:23:40
15:23:40 copy-luts:
15:23:40 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
15:23:40 Copying 47 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
15:23:40
15:23:40 test-compile:
15:23:40 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:23:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
15:23:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
15:23:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
15:23:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
15:23:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
15:23:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
15:23:40 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
15:23:41
15:23:41 testng-init:
15:23:41 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:23:41 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:23:43 15:23:43,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
15:23:43 15:23:43,626 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3432a612 - No custom configurators were discovered as a service.
15:23:43 15:23:43,626 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3432a612 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
15:23:43 15:23:43,629 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3432a612 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
15:23:43 15:23:43,630 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
15:23:43 15:23:43,630 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
15:23:43 15:23:43,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3432a612 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
15:23:43 15:23:43,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3432a612 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
15:23:43 15:23:43,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3432a612 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
15:23:43 15:23:43,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
15:23:43 15:23:43,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
15:23:43 15:23:43,634 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5e57149f - Resource [logback.xml] occurs multiple times on the classpath.
15:23:43 15:23:43,634 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5e57149f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
15:23:43 15:23:43,634 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5e57149f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
15:23:43 15:23:43,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
15:23:43 15:23:43,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
15:23:43 15:23:43,900 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
15:23:43 15:23:43,901 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@737fd68 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
15:23:43 15:23:43,901 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@737fd68 - Please move "immediateFlush" property into the enclosing appender.
15:23:43 15:23:43,963 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@737fd68 - Setting the "immediateFlush" property of the enclosing appender to true
15:23:43 15:23:43,964 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
15:23:43 15:23:43,964 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
15:23:43 15:23:43,964 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
15:23:43 15:23:43,964 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
15:23:43 15:23:43,964 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
15:23:43 15:23:43,964 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
15:23:43 15:23:43,965 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7e1b750e - End of configuration.
15:23:43 15:23:43,967 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5f385ee9 - Registering current configuration as safe fallback point
15:23:43 15:23:43,967 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3432a612 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 335 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
15:23:43
15:23:43 lifecycle.test-compile:
15:23:43 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
15:23:43 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
15:23:44 warning: [options] bootstrap class path not set in conjunction with -source 8
15:23:45 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:45 import omero.grid.RawAccessRequest;
15:23:45 ^
15:23:45 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:45 import omero.grid.RawAccessRequest;
15:23:45 ^
15:23:45 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:45 import omero.grid.RawAccessRequest;
15:23:45 ^
15:23:45 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
15:23:45 import omero.model.ImportJob;
15:23:45 ^
15:23:45 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:23:45 import omero.model.ImportJobI;
15:23:45 ^
15:23:46 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
15:23:46 IObject link = (IObject) linkClass.newInstance();
15:23:46 ^
15:23:46 where T is a type-variable:
15:23:46 T extends Object declared in class Class
15:23:46 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
15:23:46 T copy = (T) obj.getClass().newInstance();
15:23:46 ^
15:23:46 where T is a type-variable:
15:23:46 T extends Object declared in class Class
15:23:46 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:46 RawAccessRequest raw = new RawAccessRequest();
15:23:46 ^
15:23:46 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:46 RawAccessRequest raw = new RawAccessRequest();
15:23:46 ^
15:23:46 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:23:46 raw.repoUuid = legacy.root().getHash().getValue();
15:23:46 ^
15:23:46 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
15:23:46 raw.command = "rm";
15:23:46 ^
15:23:46 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
15:23:46 raw.args = Arrays.asList(path);
15:23:46 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
15:23:47 final IObject link = linkClass.newInstance();
15:23:47 ^
15:23:47 where T is a type-variable:
15:23:47 T extends Object declared in class Class
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
15:23:47 originalLink.setChild(annotationClass.newInstance());
15:23:47 ^
15:23:47 where T is a type-variable:
15:23:47 T extends Object declared in class Class
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:23:47 RoiResult r = svc.findByImage(id, new RoiOptions());
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:47 final RawAccessRequest request = new RawAccessRequest();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:47 final RawAccessRequest request = new RawAccessRequest();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:23:47 request.repoUuid = repo.root().getHash().getValue();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
15:23:47 request.command = "exists";
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
15:23:47 request.args = Collections.singletonList(dirPath);
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:47 final RawAccessRequest request = new RawAccessRequest();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
15:23:47 final RawAccessRequest request = new RawAccessRequest();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
15:23:47 request.repoUuid = repo.root().getHash().getValue();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
15:23:47 request.command = "exists";
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
15:23:47 request.args = Collections.singletonList(dirName);
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
15:23:47 final ImportJob importJob = new ImportJobI();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
15:23:47 final ImportJob importJob = new ImportJobI();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
15:23:47 importJob.setImageName(omero.rtypes.rstring(name));
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
15:23:47 importJob.setImageDescription(omero.rtypes.rstring(desc));
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:23:47 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
15:23:47 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:23:47 final String savedName = sent.getImageName().getValue().toString();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:23:47 final String savedDesc = sent.getImageDescription().getValue().toString();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:23:47 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
15:23:47 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
15:23:47 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
15:23:47 ^
15:23:47 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
15:23:47 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
15:23:47 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 RoiResult r = svc.findByImage(image.getId().getValue(),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
15:23:48 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
15:23:48 table = svc.getTable(f.getId().getValue());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 RoiResult r = svc.findByImage(image.getId().getValue(),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:23:48 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
15:23:48 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
15:23:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
15:23:48 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:23:48 svc.getShapeStatsRestricted(
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
15:23:48 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:23:48 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:23:48 request.typesToIgnore = Collections.singletonList("TagAnnotation");
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:23:48 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:23:48 request.typesToIgnore = Collections.singletonList("Annotation");
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
15:23:48 request.typesToIgnore = Collections.singletonList("Annotation");
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:23:48 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:23:48 p2.setRelatedTo(p1);
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:23:48 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:23:48 pixels1.setRelatedTo(pixels2);
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:23:48 Pixels pixels = pixels1.getRelatedTo();
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:23:48 Assert.assertNull(pixels1.getRelatedTo());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
15:23:48 pixels1.setRelatedTo(pixels2);
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:23:48 Pixels pixels = pixels1.getRelatedTo();
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
15:23:48 Assert.assertNull(pixels1.getRelatedTo());
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
15:23:48 ^
15:23:48 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
15:23:48 l = svc.getRoiMeasurements(image.getId().getValue(), options);
15:23:48 ^
15:23:48 Note: Some input files use unchecked or unsafe operations.
15:23:48 Note: Recompile with -Xlint:unchecked for details.
15:23:48 88 warnings
15:23:48 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_1333805220.tmp
15:23:48 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
15:23:49 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:23:49 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-546-563cb21b2c-ice36-b364-ice36 :: integration :: Fri Mar 28 15:23:40 UTC 2025
15:23:49 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
15:23:49 :: publishing :: omero#OmeroJava-test
15:23:49 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-546-563cb21b2c-ice36-b364-ice36.jar
15:23:49 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-546-563cb21b2c-ice36-b364-ice36.xml
15:23:49
15:23:49 BUILD SUCCESSFUL
15:23:49 Total time: 47 seconds
15:23:49 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
15:23:49 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
15:23:49 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
15:23:49 + omero config set omero.db.name OMERO-test-integration
15:23:50 + omero config set omero.db.host pg
15:23:51 + omero config set omero.db.user postgres
15:23:52 + omero config set omero.db.poolsize 50
15:23:53 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
15:23:53 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
15:23:54 + omero config set omero.ports.prefix 1
15:23:55 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
15:23:56 + omero certificates
15:23:57 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
15:23:57 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
15:23:57 + createdb -h pg -U postgres OMERO-test-integration
15:23:58 + omero db script -f dbsetup.sql '' '' omero
15:23:58 WARNING: Positional arguments are deprecated
15:23:59 Using OMERO5.4 for version
15:23:59 Using 0 for patch
15:23:59 Using password from commandline
15:23:59 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
15:23:59 BEGIN
15:23:59 CREATE FUNCTION
15:23:59 CREATE FUNCTION
15:23:59 assert_db_server_prerequisites
15:23:59 --------------------------------
15:23:59
15:23:59 (1 row)
15:23:59
15:23:59 DROP FUNCTION
15:23:59 DROP FUNCTION
15:23:59 CREATE DOMAIN
15:23:59 CREATE DOMAIN
15:23:59 CREATE DOMAIN
15:23:59 CREATE DOMAIN
15:23:59 CREATE DOMAIN
15:23:59 CREATE TYPE
15:23:59 CREATE TYPE
15:23:59 CREATE TYPE
15:23:59 CREATE TYPE
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15:23:59 CREATE TYPE
15:23:59 CREATE TYPE
15:23:59 CREATE TABLE
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15:24:01 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
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15:24:01 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
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15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
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15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 DROP TABLE
15:24:02 CREATE VIEW
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
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15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE FUNCTION
15:24:02 SET CONSTRAINTS
15:24:02 CREATE FUNCTION
15:24:02 CREATE SEQUENCE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 CREATE INDEX
15:24:02 CREATE FUNCTION
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE SEQUENCE
15:24:02 INSERT 0 1
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE TABLE
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
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15:24:02 CREATE TRIGGER
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15:24:02 CREATE TRIGGER
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15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 INSERT 0 1
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
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15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 UPDATE 1
15:24:02 ALTER TABLE
15:24:02 CREATE FUNCTION
15:24:02 CREATE TABLE
15:24:02 INSERT 0 1
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 CREATE INDEX
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 ALTER TABLE
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE TABLE
15:24:02 INSERT 0 1
15:24:02 INSERT 0 1
15:24:02 CREATE TABLE
15:24:02 INSERT 0 1
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 CREATE TABLE
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE INDEX
15:24:02 CREATE FUNCTION
15:24:02 CREATE TRIGGER
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:02 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 CREATE FUNCTION
15:24:03 CREATE TRIGGER
15:24:03 CREATE FUNCTION
15:24:03 CREATE FUNCTION
15:24:03 CREATE FUNCTION
15:24:03 CREATE TRIGGER
15:24:03 CREATE TRIGGER
15:24:03 CREATE TRIGGER
15:24:03 DROP TABLE
15:24:03 DROP TABLE
15:24:03 DROP TABLE
15:24:03 DROP TABLE
15:24:03 DROP TABLE
15:24:03 CREATE VIEW
15:24:03 CREATE VIEW
15:24:03 CREATE VIEW
15:24:03 CREATE VIEW
15:24:03 CREATE VIEW
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 ALTER TABLE
15:24:03 CREATE FUNCTION
15:24:03 CREATE TRIGGER
15:24:03 CREATE TABLE
15:24:03 CREATE INDEX
15:24:03 CREATE FUNCTION
15:24:03 CREATE FUNCTION
15:24:03 CREATE FUNCTION
15:24:03 CREATE FUNCTION
15:24:03 CREATE TRIGGER
15:24:03 CREATE TRIGGER
15:24:03 CREATE TRIGGER
15:24:03 CREATE TRIGGER
15:24:03 CREATE FUNCTION
15:24:03 CREATE FUNCTION
15:24:03 CREATE TRIGGER
15:24:03 CREATE TRIGGER
15:24:03 CREATE INDEX
15:24:03 UPDATE 1
15:24:03 COMMIT
15:24:03 + rm dbsetup.sql
15:24:03 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
15:24:03 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
15:24:03 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
15:24:03 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
15:24:03 + for f in $OMERO_PROFILE/blitz/*
15:24:03 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
15:24:03 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
15:24:03 + for f in $OMERO_PROFILE/blitz/*
15:24:03 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
15:24:03 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
15:24:03 + omero config set omero.mail.config true
15:24:04 + omero config set omero.mail.fake true
15:24:05 + omero config set omero.mail.port 2525
15:24:05 + BUILD_ID=DONT_KILL_ME
15:24:05 + omero admin start
15:24:14 No descriptor given. Using etc/grid/default.xml
15:24:23 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
15:24:23 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
15:24:23 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
15:24:23 Waiting on startup. Use CTRL-C to exit
15:24:23 + omero admin waitup
15:24:24 Waiting on startup. Use CTRL-C to exit
15:24:24 + omero admin diagnostics
15:24:25
15:24:25 ================================================================================
15:24:25 OMERO Diagnostics (admin)
15:24:25 ================================================================================
15:24:25
15:24:25 Commands: java -version 11.0.25 (/usr/bin/java)
15:24:25 Commands: python -V 3.11.9 (/home/omero/workspace/OMERO-test-integration/.venv3/bin/python)
15:24:25 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
15:24:25 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
15:24:25 Commands: psql --version 16.8 (/usr/bin/psql)
15:24:25 Commands: openssl version 3.2.24 (/usr/bin/openssl)
15:24:25
15:24:25 Component: OMERO.py 5.19.7.dev0
15:24:25 Component: OMERO.server 5.6.3-546-563cb21b2c-ice36-b364-ice36
15:24:25
15:24:25 Server: icegridnode running
15:24:25 Server: Blitz-0 active (pid = 354807, enabled)
15:24:25 Server: DropBox activating (enabled)
15:24:25 Server: FileServer active (pid = 354843, enabled)
15:24:25 Server: Indexer-0 activating (enabled)
15:24:25 Server: MonitorServer active (pid = 354845, enabled)
15:24:25 Server: OMERO.Glacier2 active (pid = 354852, enabled)
15:24:25 Server: OMERO.IceStorm active (pid = 354863, enabled)
15:24:25 Server: PixelData-0 activating (enabled)
15:24:25 Server: Processor-0 activating (enabled)
15:24:25 Server: Tables-0 activating (enabled)
15:24:25 Server: TestDropBox inactive (enabled)
15:24:25
15:24:25 Log dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/log exists
15:24:25 Log files: Blitz-0.log 134.5 KB errors=0 warnings=3
15:24:25 Log files: DropBox.log 121 B
15:24:25 Log files: FileServer.log 114 B
15:24:25 Log files: Indexer-0.log 114 B
15:24:25 Log files: MonitorServer.log 117 B
15:24:25 Log files: PixelData-0.log 114 B
15:24:25 Log files: Processor-0.log 281 B
15:24:25 Log files: Tables-0.log 281 B
15:24:25 Log files: TestDropBox.log n/a
15:24:25 Log files: master.err 19.0 KB
15:24:25 Log files: master.out 42.0 KB
15:24:25 Log files: Total size 0.20 MB
15:24:25
15:24:25
15:24:25 Environment:OMERO_HOME=(unset)
15:24:25 Environment:OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
15:24:25 Environment:OMERO_NODE=(unset)
15:24:25 Environment:OMERO_MASTER=(unset)
15:24:25 Environment:OMERO_USERDIR=(unset)
15:24:25 Environment:OMERO_TMPDIR=(unset)
15:24:25 Environment:PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
15:24:25 Environment:PYTHONPATH=(unset)
15:24:25 Environment:ICE_HOME=/opt/ice-3.6.5
15:24:25 Environment:LD_LIBRARY_PATH=(unset)
15:24:25 Environment:DYLD_LIBRARY_PATH=(unset)
15:24:25
15:24:25 OMERO SSL port:14064
15:24:25 OMERO TCP port:14063
15:24:25 OMERO data dir:'/home/omero/workspace/OMERO-test-integration/data' Exists? True Is writable? True
15:24:25 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 594070)
15:24:25
15:24:25 JVM settings: Blitz-${index} -Xmx9600m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:24:25 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:24:25 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:24:25 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions
15:24:25
15:24:25 Jar: lib/server/formats-api.jar Bio-Formats API 8.2.0-SNAPSHOT 28 March 2025 ed42ad1a3fa1574aea40542e60bb276af8688677
15:24:25 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.2.0-SNAPSHOT 28 March 2025 ed42ad1a3fa1574aea40542e60bb276af8688677
15:24:25 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.2.0-SNAPSHOT 28 March 2025 ed42ad1a3fa1574aea40542e60bb276af8688677
15:24:25 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.1-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe
15:24:25 Jar: lib/server/ome-common.jar OME Common Java 6.0.26-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe
15:24:25 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe
15:24:25 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe
15:24:25 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe
15:24:25 Jar: lib/server/ome-xml.jar OME XML library 6.5.0-SNAPSHOT 28 March 2025 0ecbcec1fc0ed9598e320e21e10400d61e92cbbe
15:24:25 Jar: lib/server/omero-blitz.jar jar 5.8.2-SNAPSHOT
15:24:25 Jar: lib/server/omero-common.jar jar 5.7.3-SNAPSHOT
15:24:25 Jar: lib/server/omero-gateway.jar jar 5.10.2-SNAPSHOT
15:24:25 Jar: lib/server/omero-model.jar jar 5.7.3-SNAPSHOT
15:24:25 Jar: lib/server/omero-renderer.jar jar 5.6.3-SNAPSHOT
15:24:25 Jar: lib/server/omero-romio.jar jar 5.8.3-SNAPSHOT
15:24:25 Jar: lib/server/omero-server.jar jar 5.7.2-SNAPSHOT
15:24:25 + export OMERO_SESSION_DIR=/tmp/OMERO-test-integration/341
15:24:25 + OMERO_SESSION_DIR=/tmp/OMERO-test-integration/341
15:24:25 + export ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
15:24:25 + ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
15:24:25 + echo Running the integration tests with -Dtestng.useDefaultListeners=true
15:24:25 Running the integration tests with -Dtestng.useDefaultListeners=true
15:24:25 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroJava/build.xml -Dtestng.useDefaultListeners=true -Dtestreports.dir=target/reports/integration integration
15:24:25 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
15:24:26 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/build.xml
15:24:26 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
15:24:26
15:24:26 testng-init:
15:24:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
15:24:26 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:24:30 15:24:29,820 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
15:24:30 15:24:29,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68631b1d - No custom configurators were discovered as a service.
15:24:30 15:24:29,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68631b1d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
15:24:30 15:24:29,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68631b1d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
15:24:30 15:24:29,827 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
15:24:30 15:24:29,828 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
15:24:30 15:24:29,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68631b1d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
15:24:30 15:24:29,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68631b1d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
15:24:30 15:24:29,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68631b1d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
15:24:30 15:24:29,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
15:24:30 15:24:29,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
15:24:30 15:24:29,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5a48da4f - Resource [logback.xml] occurs multiple times on the classpath.
15:24:30 15:24:29,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5a48da4f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
15:24:30 15:24:29,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@5a48da4f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
15:24:30 15:24:30,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
15:24:30 15:24:30,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
15:24:30 15:24:30,072 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
15:24:30 15:24:30,074 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@a0c5be - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
15:24:30 15:24:30,074 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@a0c5be - Please move "immediateFlush" property into the enclosing appender.
15:24:30 15:24:30,135 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@a0c5be - Setting the "immediateFlush" property of the enclosing appender to true
15:24:30 15:24:30,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
15:24:30 15:24:30,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
15:24:30 15:24:30,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
15:24:30 15:24:30,136 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
15:24:30 15:24:30,136 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
15:24:30 15:24:30,136 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
15:24:30 15:24:30,137 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6424e613 - End of configuration.
15:24:30 15:24:30,139 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@14efa279 - Registering current configuration as safe fallback point
15:24:30 15:24:30,139 |-INFO in ch.qos.logback.classic.util.ContextInitializer@68631b1d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 308 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
15:24:30
15:24:30 lifecycle.test-compile:
15:24:30 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_225112954.tmp
15:24:30 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
15:24:30 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
15:24:30 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-546-563cb21b2c-ice36-b364-ice36 :: integration :: Fri Mar 28 15:24:26 UTC 2025
15:24:30 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
15:24:30 :: publishing :: omero#OmeroJava-test
15:24:30 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-546-563cb21b2c-ice36-b364-ice36.jar
15:24:30 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-546-563cb21b2c-ice36-b364-ice36.xml
15:24:30
15:24:30 integration:
15:24:30 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
15:24:30 15:24:30,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
15:24:30 15:24:30,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35cabb2a - No custom configurators were discovered as a service.
15:24:30 15:24:30,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35cabb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
15:24:30 15:24:30,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35cabb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
15:24:30 15:24:30,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
15:24:30 15:24:30,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
15:24:30 15:24:30,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35cabb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 3 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
15:24:30 15:24:30,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35cabb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
15:24:30 15:24:30,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35cabb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
15:24:30 15:24:30,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
15:24:30 15:24:30,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
15:24:30 15:24:30,730 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7e07db1f - Resource [logback.xml] occurs multiple times on the classpath.
15:24:30 15:24:30,730 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7e07db1f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
15:24:30 15:24:30,730 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7e07db1f - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
15:24:30 15:24:30,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
15:24:30 15:24:30,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
15:24:30 15:24:30,925 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
15:24:30 15:24:30,927 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1189dd52 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
15:24:30 15:24:30,927 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1189dd52 - Please move "immediateFlush" property into the enclosing appender.
15:24:30 15:24:30,952 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@1189dd52 - Setting the "immediateFlush" property of the enclosing appender to true
15:24:30 15:24:30,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
15:24:30 15:24:30,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
15:24:30 15:24:30,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
15:24:30 15:24:30,953 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
15:24:30 15:24:30,953 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
15:24:30 15:24:30,953 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
15:24:30 15:24:30,953 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@36bc55de - End of configuration.
15:24:30 15:24:30,954 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@564fabc8 - Registering current configuration as safe fallback point
15:24:30 15:24:30,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35cabb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
15:24:32 Mar 28, 2025 3:24:32 PM ome.system.OmeroContext prepareRefresh
15:24:32 INFO: Refreshing ome.system.OmeroContext@7cf283e1: startup date [Fri Mar 28 15:24:32 UTC 2025]; root of context hierarchy
15:24:32 Mar 28, 2025 3:24:32 PM org.springframework.beans.factory.xml.XmlBeanDefinitionReader loadBeanDefinitions
15:24:32 INFO: Loading XML bean definitions from class path resource [ome/config.xml]
15:24:45 3d8f309c-d438-4203-ac5e-0ec2d8b20bfb
15:28:48 Build was aborted
15:28:48 Aborted by devspace
15:28:48 Recording test results
15:28:48 The tests failed.
15:28:48
15:28:48 BUILD SUCCESSFUL
15:28:48 Total time: 4 minutes 22 seconds
15:28:48 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroPy/build.xml integration -Dtestreports.dir=target/reports/integration
15:28:48 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0
15:28:49 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy/build.xml
15:28:49 ERROR: Step ‘Publish JUnit test result report’ failed: No test report files were found. Configuration error?
15:28:49 Build Aborted. Not looking for any TestNG results.
15:28:49 Finished: ABORTED
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