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#15 415.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml/1.4/doxia-module-xhtml-1.4.jar
#15 415.7 Downloaded from central: https://repo.maven.apache.org/maven2/xerces/xercesImpl/2.9.1/xercesImpl-2.9.1.jar (1.2 MB at 11 MB/s)
#15 415.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-fml/1.4/doxia-module-fml-1.4.jar
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#15 415.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-analyzer/1.10/maven-dependency-analyzer-1.10.jar
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#15 415.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0.1/maven-dependency-tree-3.0.1.jar
#15 415.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.4/doxia-decoration-model-1.4.jar (61 kB at 406 kB/s)
#15 415.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-fml/1.4/doxia-module-fml-1.4.jar (38 kB at 233 kB/s)
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#15 415.8 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0.1/maven-dependency-tree-3.0.1.jar (37 kB at 171 kB/s)
#15 415.9 [[1;34mINFO[m] Configured Artifact: org.openmicroscopy:ome-xml:6.6.1-SNAPSHOT:jar
#15 415.9 [[1;34mINFO[m] Configured Artifact: ome:formats-api:sources:8.6.0-SNAPSHOT:jar
#15 415.9 [[1;34mINFO[m] Configured Artifact: ome:formats-bsd:sources:8.6.0-SNAPSHOT:jar
#15 415.9 [[1;34mINFO[m] Configured Artifact: ome:formats-gpl:sources:8.6.0-SNAPSHOT:jar
#15 415.9 [[1;34mINFO[m] Configured Artifact: ome:bio-formats-examples:sources:8.6.0-SNAPSHOT:jar
#15 415.9 [[1;34mINFO[m] Unpacking /bio-formats-build/ome-model/ome-xml/target/ome-xml-6.6.1-SNAPSHOT.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/ome-xml with includes "" and excludes ""
#15 416.0 [[1;34mINFO[m] Unpacking /bio-formats-build/bioformats/components/formats-api/target/formats-api-8.6.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-api with includes "" and excludes ""
#15 416.0 [[1;34mINFO[m] Unpacking /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.6.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-bsd with includes "" and excludes ""
#15 416.1 [[1;34mINFO[m] Unpacking /bio-formats-build/bioformats/components/formats-gpl/target/formats-gpl-8.6.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-gpl with includes "" and excludes ""
#15 416.1 [[1;34mINFO[m] Unpacking /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.6.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/sphinx/developers/examples with includes "" and excludes ""
#15 416.1 [[1;34mINFO[m] 
#15 416.1 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:resources[m [1m(default-resources)[m @ [36mbio-formats-documentation[0;1m ---[m
#15 416.2 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#15 416.2 [[1;34mINFO[m] Copying 10 resources
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#15 416.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/0.1/maven-shared-utils-0.1.pom
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#15 416.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-components/18/maven-shared-components-18.pom
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#15 416.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-java/0.9.2/plexus-java-0.9.2.pom
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#15 416.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-languages/0.9.2/plexus-languages-0.9.2.pom
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#15 416.4 Downloading from central: https://repo.maven.apache.org/maven2/org/ow2/asm/asm/6.0_BETA/asm-6.0_BETA.pom
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#15 416.5 Downloading from central: https://repo.maven.apache.org/maven2/org/ow2/asm/asm-parent/6.0_BETA/asm-parent-6.0_BETA.pom
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#15 416.6 Downloading from central: https://repo.maven.apache.org/maven2/org/ow2/ow2/1.3/ow2-1.3.pom
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#15 416.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-api/2.8.2/plexus-compiler-api-2.8.2.pom
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#15 416.7 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler/2.8.2/plexus-compiler-2.8.2.pom
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#15 416.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-manager/2.8.2/plexus-compiler-manager-2.8.2.pom
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#15 416.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-javac/2.8.2/plexus-compiler-javac-2.8.2.pom
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#15 416.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compilers/2.8.2/plexus-compilers-2.8.2.pom
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#15 417.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-java/0.9.2/plexus-java-0.9.2.jar
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#15 417.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-manager/2.8.2/plexus-compiler-manager-2.8.2.jar
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#15 417.0 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-manager/2.8.2/plexus-compiler-manager-2.8.2.jar (4.7 kB at 85 kB/s)
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#15 417.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-api/2.8.2/plexus-compiler-api-2.8.2.jar (26 kB at 372 kB/s)
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#15 417.1 [[1;34mINFO[m] Changes detected - recompiling the module!
#15 417.1 [[1;34mINFO[m] Compiling 11 source files to /bio-formats-build/bio-formats-documentation/target/classes
#15 417.4 [[1;34mINFO[m] /bio-formats-build/bio-formats-documentation/src/main/java/MetaSupportList.java: /bio-formats-build/bio-formats-documentation/src/main/java/MetaSupportList.java uses or overrides a deprecated API.
#15 417.4 [[1;34mINFO[m] /bio-formats-build/bio-formats-documentation/src/main/java/MetaSupportList.java: Recompile with -Xlint:deprecation for details.
#15 417.4 [[1;34mINFO[m] /bio-formats-build/bio-formats-documentation/src/main/java/OriginalMetadataAutogen.java: /bio-formats-build/bio-formats-documentation/src/main/java/OriginalMetadataAutogen.java uses unchecked or unsafe operations.
#15 417.4 [[1;34mINFO[m] /bio-formats-build/bio-formats-documentation/src/main/java/OriginalMetadataAutogen.java: Recompile with -Xlint:unchecked for details.
#15 417.4 [[1;34mINFO[m] 
#15 417.4 [[1;34mINFO[m] [1m--- [0;32mexec-maven-plugin:1.6.0:exec[m [1m(gen-meta-support)[m @ [36mbio-formats-documentation[0;1m ---[m
#15 417.6 Parsing AFIReader
#15 417.6 Parsing AIMReader
#15 417.6 Parsing AliconaReader
#15 417.6 Parsing AmiraReader
#15 417.6 Parsing AnalyzeReader
#15 417.6 Parsing APLReader
#15 417.6 Parsing ARFReader
#15 417.6 Parsing BaseZeissReader
#15 417.6 Parsing BDReader
#15 417.6 Parsing BioRadGelReader
#15 417.6 Parsing BioRadReader
#15 417.6 Parsing BioRadSCNReader
#15 417.6 Parsing BrukerReader
#15 417.6 Parsing BurleighReader
#15 417.6 Parsing CanonRawReader
#15 417.6 Parsing CellomicsReader
#15 417.6 Parsing CellSensReader
#15 417.6 Parsing CellVoyagerReader
#15 417.6 Parsing CellWorxReader
#15 417.6 Parsing ColumbusReader
#15 417.6 Parsing CV7000Reader
#15 417.6 Parsing DCIMGReader
#15 417.6 Parsing DeltavisionReader
#15 417.6 Parsing DNGReader
#15 417.6 Parsing Ecat7Reader
#15 417.6 Parsing FEIReader
#15 417.6 Parsing FEITiffReader
#15 417.6 Parsing FlexReader
#15 417.6 Parsing FluoviewReader
#15 417.6 Parsing FujiReader
#15 417.6 Parsing FV1000Reader
#15 417.6 Parsing GatanDM2Reader
#15 417.6 Parsing GatanReader
#15 417.6 Parsing GelReader
#15 417.6 Parsing HamamatsuVMSReader
#15 417.6 Parsing HISReader
#15 417.6 Parsing HitachiReader
#15 417.6 Parsing HRDGDFReader
#15 417.6 Parsing I2IReader
#15 417.6 Parsing ImaconReader
#15 417.6 Parsing ImagicReader
#15 417.6 Parsing ImarisHDFReader
#15 417.6 Parsing ImarisReader
#15 417.6 Parsing ImarisTiffReader
#15 417.6 Parsing IMODReader
#15 417.6 Parsing ImprovisionTiffReader
#15 417.6 Parsing ImspectorReader
#15 417.6 Parsing InCell3000Reader
#15 417.6 Parsing InCellReader
#15 417.6 Parsing INRReader
#15 417.6 Parsing InveonReader
#15 417.6 Parsing IonpathMIBITiffReader
#15 417.6 Parsing IPLabReader
#15 417.6 Parsing IPWReader
#15 417.6 Parsing IvisionReader
#15 417.6 Parsing JDCEReader
#15 417.6 Parsing JEOLReader
#15 417.6 Parsing JPKReader
#15 417.6 Parsing JPXReader
#15 417.6 Parsing KhorosReader
#15 417.6 Parsing KodakReader
#15 417.6 Parsing L2DReader
#15 417.6 Parsing LeicaReader
#15 417.6 Parsing LeicaSCNReader
#15 417.6 Parsing LEOReader
#15 417.6 Parsing LiFlimReader
#15 417.6 Parsing LIFReader
#15 417.6 Parsing LIMReader
#15 417.6 Parsing LOFReader
#15 417.6 Parsing MetamorphReader
#15 417.6 Parsing MetamorphTiffReader
#15 417.6 Parsing MetaxpressTiffReader
#15 417.6 Parsing MIASReader
#15 417.6 Parsing MicroCTReader
#15 417.6 Parsing MikroscanTiffReader
#15 417.6 Parsing MINCReader
#15 417.6 Parsing MolecularImagingReader
#15 417.6 Parsing MRCReader
#15 417.6 Parsing MRWReader
#15 417.6 Parsing NAFReader
#15 417.6 Parsing ND2Reader
#15 417.6 Parsing NDPIReader
#15 417.6 Parsing NDPISReader
#15 417.6 Parsing NiftiReader
#15 417.6 Parsing NikonElementsTiffReader
#15 417.6 Parsing NikonReader
#15 417.6 Parsing NikonTiffReader
#15 417.6 Parsing OIRReader
#15 417.6 Parsing OlympusTileReader
#15 417.6 Parsing OpenlabRawReader
#15 417.6 Parsing OpenlabReader
#15 417.6 Parsing OperettaReader
#15 417.6 Parsing OxfordInstrumentsReader
#15 417.6 Parsing PCIReader
#15 417.6 Parsing PCORAWReader
#15 417.6 Parsing PDSReader
#15 417.6 Parsing PerkinElmerReader
#15 417.6 Parsing PhotoshopTiffReader
#15 417.6 Parsing PovrayReader
#15 417.6 Parsing PQBinReader
#15 417.6 Parsing PrairieReader
#15 417.6 Parsing PSDReader
#15 417.6 Parsing PyramidTiffReader
#15 417.6 Parsing QuesantReader
#15 417.6 Parsing RCPNLReader
#15 417.6 Parsing RHKReader
#15 417.6 Parsing SBIGReader
#15 417.6 Parsing ScanrReader
#15 417.6 Parsing SDTReader
#15 417.6 Parsing SeikoReader
#15 417.6 Parsing SEQReader
#15 417.6 Parsing SIFReader
#15 417.6 Parsing SimplePCITiffReader
#15 417.6 Parsing SISReader
#15 417.6 Parsing SlidebookReader
#15 417.6 Parsing SlidebookTiffReader
#15 417.6 Parsing SMCameraReader
#15 417.6 Parsing SPCReader
#15 417.6 Parsing SPEReader
#15 417.6 Parsing SpiderReader
#15 417.6 Parsing SVSReader
#15 417.6 Parsing TargaReader
#15 417.6 Parsing TCSReader
#15 417.6 Parsing TecanReader
#15 417.6 Parsing TillVisionReader
#15 417.6 Parsing TissueFAXSReader
#15 417.6 Parsing TopometrixReader
#15 417.6 Parsing TrestleReader
#15 417.6 Parsing UBMReader
#15 417.6 Parsing UnisokuReader
#15 417.6 Parsing VarianFDFReader
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#15 418.7 [[1;34mINFO[m] 
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#15 418.9 Parsing configuration data
#15 418.9 	Arc
#15 418.9 	BooleanAnnotation
#15 418.9 	Channel
#15 418.9 	CommentAnnotation
#15 418.9 	Dataset
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#15 418.9 	Instrument
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#15 418.9 	LightEmittingDiode
#15 418.9 	LightPath
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#15 418.9 	ListAnnotation
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#15 418.9 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata-summary.rst: done.
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#15 419.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IM3Reader.rst: done.
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#15 419.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/INRReader.rst: done.
#15 419.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IPLabReader.rst: done.
#15 419.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/IPWReader.rst: done.
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#15 419.8 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/WATOPReader.rst: done.
#15 419.8 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/XLEFReader.rst: done.
#15 419.8 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissCZIReader.rst: done.
#15 419.8 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissLMSReader.rst: done.
#15 419.8 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissLSMReader.rst: done.
#15 419.9 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissTIFFReader.rst: done.
#15 419.9 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissXRMReader.rst: done.
#15 419.9 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZeissZVIReader.rst: done.
#15 419.9 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/ZipReader.rst: done.
#15 419.9 [[1;34mINFO[m] 
#15 419.9 [[1;34mINFO[m] [1m--- [0;32mmaven-resources-plugin:3.1.0:testResources[m [1m(default-testResources)[m @ [36mbio-formats-documentation[0;1m ---[m
#15 419.9 [[1;34mINFO[m] Using 'UTF-8' encoding to copy filtered resources.
#15 419.9 [[1;34mINFO[m] skip non existing resourceDirectory /bio-formats-build/bio-formats-documentation/src/test/resources
#15 419.9 [[1;34mINFO[m] 
#15 419.9 [[1;34mINFO[m] [1m--- [0;32mmaven-compiler-plugin:3.7.0:testCompile[m [1m(default-testCompile)[m @ [36mbio-formats-documentation[0;1m ---[m
#15 419.9 [[1;34mINFO[m] No sources to compile
#15 419.9 [[1;34mINFO[m] 
#15 419.9 [[1;34mINFO[m] [1m--- [0;32mmaven-surefire-plugin:2.22.0:test[m [1m(default-test)[m @ [36mbio-formats-documentation[0;1m ---[m
#15 419.9 [[1;34mINFO[m] No tests to run.
#15 419.9 [[1;34mINFO[m] 
#15 419.9 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-documentation[0;1m ---[m
#15 420.0 [[1;34mINFO[m] Building jar: /bio-formats-build/bio-formats-documentation/target/bio-formats-documentation-8.6.0-SNAPSHOT.jar
#15 420.0 [[1;34mINFO[m] 
#15 420.0 [[1;34mINFO[m] [1m--- [0;32mexec-maven-plugin:1.6.0:exec[m [1m(sphinx-html)[m @ [36mbio-formats-documentation[0;1m ---[m
#15 420.2 Running Sphinx v7.4.7
#15 420.2 loading translations [en]... done
#15 420.5 making output directory... done
#15 420.5 Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
#15 420.5 building [mo]: targets for 0 po files that are out of date
#15 420.5 writing output... 
#15 420.5 building [html]: targets for 409 source files that are out of date
#15 420.5 updating environment: [new config] 409 added, 0 changed, 0 removed
#15 420.5 reading sources... [  0%] about/bug-reporting
#15 420.5 reading sources... [  0%] about/index
#15 420.6 reading sources... [  1%] about/whats-new
#15 422.1 reading sources... [  1%] developers/building-bioformats
#15 422.2 reading sources... [  1%] developers/code-formatting
#15 422.2 reading sources... [  1%] developers/commit-testing
#15 422.2 reading sources... [  2%] developers/components
#15 422.2 reading sources... [  2%] developers/conversion
#15 422.3 reading sources... [  2%] developers/dotnet-dev
#15 422.3 reading sources... [  2%] developers/export
#15 422.3 reading sources... [  3%] developers/export2
#15 422.3 reading sources... [  3%] developers/external-readers
#15 422.3 reading sources... [  3%] developers/file-reader
#15 422.4 reading sources... [  3%] developers/file-writer
#15 422.4 reading sources... [  4%] developers/format-documentation
#15 422.4 reading sources... [  4%] developers/generating-test-images
#15 422.5 reading sources... [  4%] developers/in-memory
#15 422.6 reading sources... [  4%] developers/index
#15 422.6 reading sources... [  5%] developers/java-library
#15 422.7 reading sources... [  5%] developers/logging
#15 422.7 reading sources... [  5%] developers/matlab-dev
#15 422.8 reading sources... [  5%] developers/non-java-code
#15 422.8 reading sources... [  6%] developers/overview
#15 422.8 reading sources... [  6%] developers/python-dev
#15 422.8 reading sources... [  6%] developers/r-dev
#15 422.8 reading sources... [  6%] developers/reader-guide
#15 422.9 reading sources... [  7%] developers/service
#15 422.9 reading sources... [  7%] developers/tiling
#15 422.9 reading sources... [  7%] developers/units
#15 423.0 reading sources... [  7%] developers/useful-scripts
#15 423.0 reading sources... [  8%] developers/wsi
#15 423.0 reading sources... [  8%] formats/3i-slidebook
#15 423.0 reading sources... [  8%] formats/3i-slidebook-7
#15 423.0 reading sources... [  8%] formats/abd-tiff
#15 423.1 reading sources... [  9%] formats/aim
#15 423.1 reading sources... [  9%] formats/alicona-3d
#15 423.1 reading sources... [  9%] formats/amersham-biosciences-gel
#15 423.1 reading sources... [  9%] formats/amira-mesh
#15 423.2 reading sources... [ 10%] formats/amnis-flowsight
#15 423.2 reading sources... [ 10%] formats/analyze-75
#15 423.2 reading sources... [ 10%] formats/andor-sif
#15 423.2 reading sources... [ 10%] formats/animated-png
#15 423.2 reading sources... [ 11%] formats/aperio-afi
#15 423.2 reading sources... [ 11%] formats/aperio-svs-tiff
#15 423.3 reading sources... [ 11%] formats/applied-precision-cellworx
#15 423.3 reading sources... [ 11%] formats/avi
#15 423.3 reading sources... [ 11%] formats/axon-raw-format
#15 423.3 reading sources... [ 12%] formats/bd-pathway
#15 423.3 reading sources... [ 12%] formats/becker-hickl-fifo
#15 423.4 reading sources... [ 12%] formats/becker-hickl-spcimage
#15 423.4 reading sources... [ 12%] formats/big-data-viewer
#15 423.4 reading sources... [ 13%] formats/bio-rad-gel
#15 423.4 reading sources... [ 13%] formats/bio-rad-pic
#15 423.4 reading sources... [ 13%] formats/bio-rad-scn
#15 423.4 reading sources... [ 13%] formats/bitplane-imaris
#15 423.5 reading sources... [ 14%] formats/bruker-mri
#15 423.5 reading sources... [ 14%] formats/burleigh
#15 423.5 reading sources... [ 14%] formats/canon-dng
#15 423.5 reading sources... [ 14%] formats/cellh5
#15 423.5 reading sources... [ 15%] formats/cellomics
#15 423.5 reading sources... [ 15%] formats/cellsens-vsi
#15 423.6 reading sources... [ 15%] formats/cellvoyager
#15 423.6 reading sources... [ 15%] formats/cv7000
#15 423.6 reading sources... [ 16%] formats/dataset-table
#15 423.9 reading sources... [ 16%] formats/deltavision
#15 423.9 reading sources... [ 16%] formats/dicom
#15 423.9 reading sources... [ 16%] formats/ecat7
#15 423.9 reading sources... [ 17%] formats/eps
#15 423.9 reading sources... [ 17%] formats/evotecperkinelmer-opera-flex
#15 423.9 reading sources... [ 17%] formats/fei
#15 424.0 reading sources... [ 17%] formats/fei-tiff
#15 424.0 reading sources... [ 18%] formats/fits
#15 424.0 reading sources... [ 18%] formats/gatan-digital-micrograph
#15 424.0 reading sources... [ 18%] formats/gatan-digital-micrograph-2
#15 424.0 reading sources... [ 18%] formats/ge-microct
#15 424.0 reading sources... [ 19%] formats/gif
#15 424.1 reading sources... [ 19%] formats/hamamatsu-aquacosmos-naf
#15 424.1 reading sources... [ 19%] formats/hamamatsu-dcimg
#15 424.1 reading sources... [ 19%] formats/hamamatsu-his
#15 424.1 reading sources... [ 20%] formats/hamamatsu-ndpi
#15 424.1 reading sources... [ 20%] formats/hamamatsu-vms
#15 424.1 reading sources... [ 20%] formats/hitachi-s-4800
#15 424.2 reading sources... [ 20%] formats/i2i
#15 424.2 reading sources... [ 21%] formats/ics
#15 424.3 reading sources... [ 21%] formats/imacon
#15 424.3 reading sources... [ 21%] formats/imagepro-sequence
#15 424.3 reading sources... [ 21%] formats/imagepro-workspace
#15 424.3 reading sources... [ 22%] formats/imagic
#15 424.3 reading sources... [ 22%] formats/imod
#15 424.4 reading sources... [ 22%] formats/improvision-openlab-liff
#15 424.4 reading sources... [ 22%] formats/improvision-openlab-raw
#15 424.4 reading sources... [ 22%] formats/improvision-tiff
#15 424.4 reading sources... [ 23%] formats/imspector-obf
#15 424.4 reading sources... [ 23%] formats/incell-1000
#15 424.4 reading sources... [ 23%] formats/incell-3000
#15 424.5 reading sources... [ 23%] formats/index
#15 424.5 reading sources... [ 24%] formats/inr
#15 424.5 reading sources... [ 24%] formats/inveon
#15 424.5 reading sources... [ 24%] formats/ionpath-mibi
#15 424.5 reading sources... [ 24%] formats/ip
#15 424.5 [output clipped, log limit 2MiB reached]
#15 464.0 SLF4J: No SLF4J providers were found.
#15 464.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 464.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 464.3 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 464.3 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 464.3 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 464.3 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 472.5s

#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.1s

#17 [13/14] RUN ant jars tools
#17 0.411 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.793      [echo] isSnapshot = true
#17 2.903 
#17 2.903 copy-jars:
#17 2.903 
#17 2.903 deps-formats-api:
#17 2.986      [echo] isSnapshot = true
#17 3.045 
#17 3.045 install-pom:
#17 3.240 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 3.252 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 3.256 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 3.258 
#17 3.258 jar-formats-api:
#17 3.378      [echo] isSnapshot = true
#17 3.542 
#17 3.542 init-title:
#17 3.542      [echo] ----------=========== formats-api ===========----------
#17 3.542 
#17 3.542 init-timestamp:
#17 3.551 
#17 3.551 init:
#17 3.551 
#17 3.551 copy-resources:
#17 3.552     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.568      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.570 
#17 3.570 compile:
#17 3.725 [resolver:resolve] Resolving artifacts
#17 3.752     [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 3.963     [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 3.963     [javac]   not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 3.963     [javac]     --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 4.964     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 4.964     [javac]     int currentIndex = r.getCoreIndex();
#17 4.964     [javac]                         ^
#17 4.965     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.965     [javac]     r.setCoreIndex(coreIndex);
#17 4.965     [javac]      ^
#17 4.965     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 4.965     [javac]     r.setCoreIndex(currentIndex);
#17 4.965     [javac]      ^
#17 5.065     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.065     [javac]   public void setCoreIndex(int no) {
#17 5.065     [javac]               ^
#17 5.065     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.065     [javac]   public int getCoreIndex() {
#17 5.065     [javac]              ^
#17 5.066     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.066     [javac]   public int coreIndexToSeries(int index)
#17 5.066     [javac]              ^
#17 5.066     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.066     [javac]   public int seriesToCoreIndex(int series)
#17 5.066     [javac]              ^
#17 5.066     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.066     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#17 5.066     [javac]                             ^
#17 5.166     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.166     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 5.166     [javac]                                              ^
#17 5.166     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.167     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 5.167     [javac]                                              ^
#17 5.167     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.167     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 5.167     [javac]                                                      ^
#17 5.167     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.167     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 5.167     [javac]                                                      ^
#17 5.267     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 5.267     [javac]       Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 5.267     [javac]                                        ^
#17 5.267     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.267     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#17 5.267     [javac]     ^
#17 5.268     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 5.268     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#17 5.268     [javac]                               ^
#17 5.368     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.368     [javac]   public void setCoreIndex(int no) {
#17 5.368     [javac]               ^
#17 5.368     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.368     [javac]   public int getCoreIndex() {
#17 5.368     [javac]              ^
#17 5.368     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.368     [javac]   public int coreIndexToSeries(int index) {
#17 5.368     [javac]              ^
#17 5.368     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.368     [javac]   public int seriesToCoreIndex(int series) {
#17 5.368     [javac]              ^
#17 5.369     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.369     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#17 5.369     [javac]                             ^
#17 5.369     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.369     [javac]     return getReader().getCoreMetadataList();
#17 5.369     [javac]                       ^
#17 5.369     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.369     [javac]     return getReader().getCoreIndex();
#17 5.369     [javac]                       ^
#17 5.369     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.369     [javac]     getReader().setCoreIndex(no);
#17 5.369     [javac]                ^
#17 5.369     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.369     [javac]     return getReader().seriesToCoreIndex(series);
#17 5.369     [javac]                       ^
#17 5.369     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.369     [javac]     return getReader().coreIndexToSeries(index);
#17 5.369     [javac]                       ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.470     [javac]   public void setCoreIndex(int no) {
#17 5.470     [javac]               ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.470     [javac]   public int getCoreIndex() {
#17 5.470     [javac]              ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.470     [javac]   public int coreIndexToSeries(int index) {
#17 5.470     [javac]              ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.470     [javac]   public int seriesToCoreIndex(int series) {
#17 5.470     [javac]              ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.470     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#17 5.470     [javac]                             ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 5.470     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 5.470     [javac]                                        ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 5.470     [javac]     return reader.getCoreIndex();
#17 5.470     [javac]                  ^
#17 5.470     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 5.471     [javac]     reader.setCoreIndex(no);
#17 5.471     [javac]           ^
#17 5.471     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 5.471     [javac]     return reader.seriesToCoreIndex(series);
#17 5.471     [javac]                  ^
#17 5.471     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 5.471     [javac]     return reader.coreIndexToSeries(index);
#17 5.471     [javac]                  ^
#17 5.671     [javac] Note: Some input files use unchecked or unsafe operations.
#17 5.671     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 5.671     [javac] 36 warnings
#17 5.702 
#17 5.702 formats-api.jar:
#17 5.702     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 5.730       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 5.767 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 5.771 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 5.772 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 5.773 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 5.776 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 5.777 
#17 5.777 deps-turbojpeg:
#17 5.777 
#17 5.777 jar-turbojpeg:
#17 5.882      [echo] isSnapshot = true
#17 6.030 
#17 6.030 init-title:
#17 6.030      [echo] ----------=========== turbojpeg ===========----------
#17 6.030 
#17 6.030 init-timestamp:
#17 6.031 
#17 6.031 init:
#17 6.031 
#17 6.031 copy-resources:
#17 6.031     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.032 
#17 6.032 compile:
#17 6.043 [resolver:resolve] Resolving artifacts
#17 6.046     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 6.249     [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 6.249     [javac]   not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 6.249     [javac]     --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 7.050     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.050     [javac]   protected void finalize() throws Throwable {
#17 7.050     [javac]                  ^
#17 7.050     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.050     [javac]       super.finalize();
#17 7.050     [javac]            ^
#17 7.050     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.050     [javac]   protected void finalize() throws Throwable {
#17 7.050     [javac]                  ^
#17 7.050     [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 7.050     [javac]       super.finalize();
#17 7.050     [javac]            ^
#17 7.095     [javac] 5 warnings
#17 7.095 
#17 7.095 jar:
#17 7.099       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 7.286 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 7.294 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 7.295 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 7.297 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 7.300 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 7.302 
#17 7.302 deps-formats-bsd:
#17 7.302 
#17 7.302 jar-formats-bsd:
#17 7.434      [echo] isSnapshot = true
#17 7.588 
#17 7.588 init-title:
#17 7.588      [echo] ----------=========== formats-bsd ===========----------
#17 7.588 
#17 7.588 init-timestamp:
#17 7.588 
#17 7.588 init:
#17 7.588 
#17 7.588 copy-resources:
#17 7.589     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.592      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 7.593 
#17 7.593 compile:
#17 7.819 [resolver:resolve] Resolving artifacts
#17 7.845     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 8.053     [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 8.053     [javac]   not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 8.053     [javac]     --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 9.755     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.755     [javac]       core.size() != reader.getCoreMetadataList().size())
#17 9.755     [javac]                            ^
#17 9.755     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.755     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 9.755     [javac]                                          ^
#17 9.855     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.855     [javac]     int n = reader.getCoreMetadataList().size();
#17 9.855     [javac]                   ^
#17 9.855     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.855     [javac]     reader.setCoreIndex(coreIndex);
#17 9.855     [javac]           ^
#17 9.855     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.855     [javac]     int n = reader.getCoreMetadataList().size();
#17 9.855     [javac]                   ^
#17 9.855     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.855     [javac]     int n = reader.getCoreMetadataList().size();
#17 9.855     [javac]                   ^
#17 9.855     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 9.855     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 9.855     [javac]                                         ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.856     [javac]     int n = reader.getCoreMetadataList().size();
#17 9.856     [javac]                   ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 9.856     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 9.856     [javac]                                         ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.856     [javac]     int n = reader.getCoreMetadataList().size();
#17 9.856     [javac]                   ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 9.856     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 9.856     [javac]                                  ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.856     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.856     [javac]                  ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 9.856     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 9.856     [javac]                                              ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.856     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#17 9.856     [javac]                             ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.856     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 9.856     [javac]               ^
#17 9.856     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.856     [javac]       seriesCount = reader.getCoreMetadataList().size();
#17 9.856     [javac]                           ^
#17 9.857     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.857     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 9.857     [javac]                 ^
#17 9.857     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.857     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#17 9.857     [javac]               ^
#17 9.857     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.857     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 9.857     [javac]                            ^
#17 9.957     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.957     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#17 9.957     [javac]                               ^
#17 9.957     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:70: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.957     [javac]   public static final String STABLE_VERSION = "6.6.0";
#17 9.957     [javac]                              ^
#17 9.957     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:101: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.957     [javac]   public static final String OLD_TOOLS = "loci_tools.jar";
#17 9.957     [javac]                              ^
#17 9.957     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.957     [javac]       URLConnection conn = new URL(query.toString()).openConnection();
#17 9.958     [javac]                            ^
#17 9.958     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 9.958     [javac]       URL url = new URL(urlPath);
#17 9.958     [javac]                 ^
#17 10.06     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.06     [javac] public class BitBuffer {
#17 10.06     [javac]        ^
#17 10.06     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 10.06     [javac] public class BitWriter {
#17 10.06     [javac]        ^
#17 10.16     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 10.16     [javac]     BitWriter out = new BitWriter();
#17 10.16     [javac]     ^
#17 10.16     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 10.16     [javac]     BitWriter out = new BitWriter();
#17 10.16     [javac]                         ^
#17 10.26     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.26     [javac]       return new Double(v);
#17 10.26     [javac]              ^
#17 10.86     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2156: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.86     [javac]     return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 10.86     [javac]                                         ^
#17 10.86     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2163: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 10.86     [javac]     return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 10.86     [javac]                                         ^
#17 10.86     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2170: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 10.86     [javac]     return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 10.86     [javac]                                         ^
#17 10.96     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 10.96     [javac]                channelNames.put(new Integer(channelNames.size()), value);
#17 10.96     [javac]                                 ^
#17 11.16     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.16     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 11.16     [javac]                                                                    ^
#17 11.16     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1376: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 11.16     [javac]   public MetadataStore getMetadataStoreForDisplay() {
#17 11.16     [javac]                        ^
#17 11.16     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1394: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 11.16     [javac]   public MetadataStore getMetadataStoreForConversion() {
#17 11.16     [javac]                        ^
#17 11.26     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 11.26     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#17 11.26     [javac]                          ^
#17 11.26     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.26     [javac] 									store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 11.26     [javac] 									                                    ^
#17 11.36     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 11.36     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 11.36     [javac]                                                    ^
#17 11.36     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.36     [javac]   protected ReflectedUniverse r;
#17 11.36     [javac]             ^
#17 11.36     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 11.36     [javac]       r = new ReflectedUniverse();
#17 11.36     [javac]               ^
#17 11.36     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 11.36     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 11.36     [javac]                                                                               ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]           double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 11.46     [javac]                                            ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]         double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 11.46     [javac]                                                                    ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]         double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 11.46     [javac]                                                                    ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 11.46     [javac]                                                                                        ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 11.46     [javac]                                                                                         ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 11.46     [javac]                                                                                        ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]             double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 11.46     [javac]                                              ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 11.46     [javac]             double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 11.46     [javac]                                              ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.46     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.46     [javac]               ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.46     [javac]       ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 11.46     [javac]                                            ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 11.46     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.46     [javac]               ^
#17 11.46     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 11.46     [javac]       ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 11.46     [javac]                                             ^
#17 11.56     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 11.56     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 11.56     [javac]                                        ^
#17 11.56     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.56     [javac]         doubleResult[i] = new Double(result.get(i).doubleValue());
#17 11.56     [javac]                           ^
#17 11.56     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 11.56     [javac]       result[i] = new Double(readNumber().doubleValue());
#17 11.56     [javac]                   ^
#17 11.66     [javac] Note: Some input files use unchecked or unsafe operations.
#17 11.66     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 11.66     [javac] 58 warnings
#17 11.66 
#17 11.66 formats-bsd.jar:
#17 11.67       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 11.79 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 11.79 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 11.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 11.79 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 11.79 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 11.79 
#17 11.79 deps-formats-gpl:
#17 11.79 
#17 11.79 jar-formats-gpl:
#17 11.90      [echo] isSnapshot = true
#17 12.05 
#17 12.05 init-title:
#17 12.05      [echo] ----------=========== formats-gpl ===========----------
#17 12.05 
#17 12.05 init-timestamp:
#17 12.05 
#17 12.05 init:
#17 12.05 
#17 12.05 copy-resources:
#17 12.05     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.05      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.05 
#17 12.05 compile:
#17 12.30 [resolver:resolve] Resolving artifacts
#17 12.33     [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.54     [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 12.54     [javac]   not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 12.54     [javac]     --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 16.04     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 16.04     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#17 16.04     [javac]                                          ^
#17 16.04     [javac]   cast to Object for a varargs call
#17 16.04     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#17 16.14     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.14     [javac]     BitWriter bits = null;
#17 16.14     [javac]     ^
#17 16.14     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.14     [javac]       bits = new BitWriter(planes[index].length / 8);
#17 16.14     [javac]                  ^
#17 16.54     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 16.54     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 16.54     [javac]                                                    ^
#17 16.94     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.94     [javac]       store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.94     [javac]                                   ^
#17 16.94     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.94     [javac]       AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.94     [javac]                              ^
#17 16.94     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.94     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.94     [javac]     ^
#17 16.94     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.94     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.94     [javac]                          ^
#17 17.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.34     [javac]     Variable variable = group.findVariable(variableName);
#17 17.34     [javac]                              ^
#17 17.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.34     [javac]     Variable variable = group.findVariable(variableName);
#17 17.34     [javac]                              ^
#17 17.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 17.34     [javac]       List<Attribute> attributes = variable.getAttributes();
#17 17.34     [javac]                                            ^
#17 17.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.34     [javac]       String groupName = group.getName();
#17 17.34     [javac]                               ^
#17 17.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 17.34     [javac]       List<Attribute> attributes = group.getAttributes();
#17 17.34     [javac]                                         ^
#17 17.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.34     [javac]         String variableName = variable.getName();
#17 17.34     [javac]                                       ^
#17 17.34     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 17.34     [javac]       Group nextParent = parent.findGroup(token);
#17 17.34     [javac]                                ^
#17 17.34     [javac] Note: Some input files use unchecked or unsafe operations.
#17 17.34     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 17.34     [javac] 16 warnings
#17 17.39 
#17 17.39 formats-gpl.jar:
#17 17.40       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 17.55 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 17.55 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 17.55 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 17.55 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 17.55 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 17.56 
#17 17.56 deps-bio-formats-plugins:
#17 17.56 
#17 17.56 jar-bio-formats-plugins:
#17 17.65      [echo] isSnapshot = true
#17 17.79 
#17 17.79 init-title:
#17 17.79      [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.79 
#17 17.79 init-timestamp:
#17 17.79 
#17 17.79 init:
#17 17.79 
#17 17.79 copy-resources:
#17 17.79     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.79      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.80 
#17 17.80 compile:
#17 18.05 [resolver:resolve] Resolving artifacts
#17 18.07     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 18.27     [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 18.27     [javac]   not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 18.27     [javac]     --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 19.77     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 19.77     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 19.77     [javac]                                      ^
#17 19.87     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.87     [javac]     URL url = new URL(urlPath);
#17 19.87     [javac]               ^
#17 19.97     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.97     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#17 19.97     [javac]         ^
#17 19.97     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.97     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#17 19.97     [javac]                                   ^
#17 20.07     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 20.07     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#17 20.07     [javac]     ^
#17 20.08     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 20.08     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#17 20.08     [javac]                                ^
#17 20.28     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 20.28     [javac]       url = new URL(path);
#17 20.28     [javac]             ^
#17 20.48     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 20.48     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 20.48     [javac] 8 warnings
#17 20.51 
#17 20.51 bio-formats-plugins.jar:
#17 20.51       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 20.54 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 20.54 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 20.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 20.55 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 20.55 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 20.55 
#17 20.55 deps-bio-formats-tools:
#17 20.55 
#17 20.55 jar-bio-formats-tools:
#17 20.64      [echo] isSnapshot = true
#17 20.90 
#17 20.90 init-title:
#17 20.90      [echo] ----------=========== bio-formats-tools ===========----------
#17 20.90 
#17 20.90 init-timestamp:
#17 20.90 
#17 20.90 init:
#17 20.90 
#17 20.90 copy-resources:
#17 20.90     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.90 
#17 20.90 compile:
#17 21.16 [resolver:resolve] Resolving artifacts
#17 21.17     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 21.37     [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 21.37     [javac]   not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 21.37     [javac]     --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 22.67     [javac] 1 warning
#17 22.69 
#17 22.69 bio-formats-tools.jar:
#17 22.69       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 22.70 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 22.70 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 22.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 22.70 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 22.71 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 22.71 
#17 22.71 deps-tests:
#17 22.71 
#17 22.71 jar-tests:
#17 22.80      [echo] isSnapshot = true
#17 22.93 
#17 22.93 init-title:
#17 22.93      [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 22.93 
#17 22.93 init-timestamp:
#17 22.93 
#17 22.93 init:
#17 22.93 
#17 22.93 copy-resources:
#17 22.93     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 22.93 
#17 22.93 compile:
#17 23.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.65 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.03 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.05 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.33 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.72 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 24.73 [resolver:resolve] Resolving artifacts
#17 24.74 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.80 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.15 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.15 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.42 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.78 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 25.78     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.99     [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 25.99     [javac]   not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 25.99     [javac]     --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 27.09     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.09     [javac]         int index = unflattenedReader.getCoreIndex();
#17 27.09     [javac]                                      ^
#17 27.09     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 27.09     [javac]         reader.setCoreIndex(index);
#17 27.09     [javac]               ^
#17 27.39     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.39     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#17 27.39     [javac]                                              ^
#17 27.39     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.39     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#17 27.39     [javac]                                              ^
#17 27.79     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.79     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 27.79     [javac]                                                    ^
#17 27.79     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.79     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 27.79     [javac]                                                    ^
#17 27.79     [javac] Note: Some input files use unchecked or unsafe operations.
#17 27.79     [javac] Note: Recompile with -Xlint:unchecked for details.
#17 27.79     [javac] 7 warnings
#17 27.80 
#17 27.80 tests.jar:
#17 27.80       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 27.82 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 27.82 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 27.82 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 27.82 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.82 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 27.82 
#17 27.82 jars:
#17 27.82 
#17 27.82 copy-jars:
#17 27.82 
#17 27.82 deps-formats-api:
#17 27.88      [echo] isSnapshot = true
#17 27.93 
#17 27.93 install-pom:
#17 28.08 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 28.08 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.08 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 28.08 
#17 28.08 jar-formats-api:
#17 28.20      [echo] isSnapshot = true
#17 28.35 
#17 28.35 init-title:
#17 28.35      [echo] ----------=========== formats-api ===========----------
#17 28.35 
#17 28.35 init-timestamp:
#17 28.35 
#17 28.35 init:
#17 28.35 
#17 28.35 copy-resources:
#17 28.35 
#17 28.35 compile:
#17 28.47 [resolver:resolve] Resolving artifacts
#17 28.48 
#17 28.48 formats-api.jar:
#17 28.51 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 28.51 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 28.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 28.51 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.51 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 28.51 
#17 28.51 deps-turbojpeg:
#17 28.51 
#17 28.51 jar-turbojpeg:
#17 28.61      [echo] isSnapshot = true
#17 28.78 
#17 28.78 init-title:
#17 28.78      [echo] ----------=========== turbojpeg ===========----------
#17 28.78 
#17 28.78 init-timestamp:
#17 28.78 
#17 28.78 init:
#17 28.78 
#17 28.78 copy-resources:
#17 28.78 
#17 28.78 compile:
#17 28.79 [resolver:resolve] Resolving artifacts
#17 28.79 
#17 28.79 jar:
#17 28.80 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 28.81 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 28.81 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 28.81 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.81 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 28.81 
#17 28.81 deps-formats-bsd:
#17 28.81 
#17 28.81 jar-formats-bsd:
#17 28.91      [echo] isSnapshot = true
#17 29.04 
#17 29.04 init-title:
#17 29.04      [echo] ----------=========== formats-bsd ===========----------
#17 29.04 
#17 29.04 init-timestamp:
#17 29.05 
#17 29.05 init:
#17 29.05 
#17 29.05 copy-resources:
#17 29.05 
#17 29.05 compile:
#17 29.25 [resolver:resolve] Resolving artifacts
#17 29.27 
#17 29.27 formats-bsd.jar:
#17 29.30 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 29.31 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 29.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 29.31 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.31 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 29.31 
#17 29.31 deps-formats-gpl:
#17 29.31 
#17 29.31 jar-formats-gpl:
#17 29.40      [echo] isSnapshot = true
#17 29.53 
#17 29.53 init-title:
#17 29.53      [echo] ----------=========== formats-gpl ===========----------
#17 29.53 
#17 29.53 init-timestamp:
#17 29.53 
#17 29.53 init:
#17 29.53 
#17 29.53 copy-resources:
#17 29.53 
#17 29.53 compile:
#17 29.77 [resolver:resolve] Resolving artifacts
#17 29.79 
#17 29.79 formats-gpl.jar:
#17 29.83 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 29.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 29.83 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 29.84 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.84 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 29.84 
#17 29.84 deps-bio-formats-plugins:
#17 29.84 
#17 29.84 jar-bio-formats-plugins:
#17 29.93      [echo] isSnapshot = true
#17 30.05 
#17 30.05 init-title:
#17 30.05      [echo] ----------=========== bio-formats_plugins ===========----------
#17 30.05 
#17 30.05 init-timestamp:
#17 30.05 
#17 30.05 init:
#17 30.05 
#17 30.05 copy-resources:
#17 30.06 
#17 30.06 compile:
#17 30.30 [resolver:resolve] Resolving artifacts
#17 30.32 
#17 30.32 bio-formats-plugins.jar:
#17 30.33 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 30.33 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 30.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 30.33 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 30.33 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 30.33 
#17 30.33 deps-bio-formats-tools:
#17 30.33 
#17 30.33 jar-bio-formats-tools:
#17 30.42      [echo] isSnapshot = true
#17 30.55 
#17 30.55 init-title:
#17 30.55      [echo] ----------=========== bio-formats-tools ===========----------
#17 30.55 
#17 30.55 init-timestamp:
#17 30.55 
#17 30.55 init:
#17 30.55 
#17 30.55 copy-resources:
#17 30.55 
#17 30.55 compile:
#17 30.80 [resolver:resolve] Resolving artifacts
#17 30.81 
#17 30.81 bio-formats-tools.jar:
#17 30.81 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 30.81 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 30.81 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 30.81 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 30.82 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 30.82 
#17 30.82 deps-tests:
#17 30.82 
#17 30.82 jar-tests:
#17 30.91      [echo] isSnapshot = true
#17 31.05 
#17 31.05 init-title:
#17 31.05      [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 31.05 
#17 31.05 init-timestamp:
#17 31.05 
#17 31.05 init:
#17 31.05 
#17 31.05 copy-resources:
#17 31.05 
#17 31.05 compile:
#17 31.29 [resolver:resolve] Resolving artifacts
#17 31.30 
#17 31.30 tests.jar:
#17 31.30 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 31.31 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 31.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 31.31 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 31.31 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 31.31 
#17 31.31 jars:
#17 31.31 
#17 31.31 tools:
#17 31.31      [echo] ----------=========== bioformats_package ===========----------
#17 31.41      [echo] isSnapshot = true
#17 31.54 
#17 31.54 init-timestamp:
#17 31.54 
#17 31.54 bundle:
#17 31.78 [resolver:resolve] Resolving artifacts
#17 31.79     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.82     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.1-SNAPSHOT/ome-common-6.3.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.84     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.22.0/jackson-databind-2.22.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.07     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.22/jackson-annotations-2.22.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.09     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.22.0/jackson-core-2.22.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.16     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.22     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.23     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.24     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.24     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.41     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.89     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.89     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.89     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.90     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.98     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.99     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.99     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.1-SNAPSHOT/ome-xml-6.6.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.05     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.1-SNAPSHOT/specification-6.6.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.10     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.12     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.1-SNAPSHOT/ome-codecs-1.2.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.13     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.2.1-SNAPSHOT/ome-jai-0.2.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.27     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.30     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.37     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.41     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.41     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.51     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.53     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.96     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.99     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.02     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.12     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.13     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.15     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.16     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.38     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.45     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.51     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.63     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.1-SNAPSHOT/ome-mdbtools-5.4.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.64     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.4.1-SNAPSHOT/metakit-5.4.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.64     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.1-SNAPSHOT/ome-poi-5.4.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.77     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.78     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.10.0/cdm-core-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.24     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.25     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.14/httpclient-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.36     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.41     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.42     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.74     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.76     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.10     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.11     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.12     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.14     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.14     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.17     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.57     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.34/logback-core-1.5.34.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.69     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.34/logback-classic-1.5.34.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 37.16       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 44.22    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 44.85 [resolver:install] Using default POM (ome:bioformats_package:8.6.0-SNAPSHOT)
#17 44.87 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.pom
#17 44.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.jar
#17 44.91 [resolver:install] Installing ome:bioformats_package:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 44.91 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 44.92 
#17 44.92 BUILD SUCCESSFUL
#17 44.92 Total time: 44 seconds
#17 DONE 45.9s

#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.1s

#19 exporting to image
#19 exporting layers
#19 exporting layers 4.8s done
#19 writing image sha256:078315b6d030c8bd4bf704ad1f91fc63a98a552e490d3c06f0b374224bccbb59 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 4.9s
WARNING: current commit information was not captured by the build: failed to read current commit information with git rev-parse --is-inside-work-tree
Finished: SUCCESS