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#14 403.1 Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar (271 kB at 871 kB/s)
#14 403.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.pom
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#14 403.3 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.pom
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#14 403.3 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/parent/2.3.0/parent-2.3.0.pom
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#14 403.3 Downloading from central: https://repo.maven.apache.org/maven2/org/osgi/org.osgi.core/4.3.1/org.osgi.core-4.3.1.pom
#14 403.4 Progress (1): 1.4 kB
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#14 403.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.7/maven-core-2.0.7.pom
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#14 403.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/2.0.7/maven-2.0.7.pom
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#14 403.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/5/maven-parent-5.pom
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#14 403.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.pom
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#14 403.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.pom
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#14 403.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.pom
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#14 403.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.pom
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#14 403.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting/2.0.7/maven-reporting-2.0.7.pom
#14 403.6 Progress (1): 1.4 kB
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#14 403.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/1.0-alpha-7/doxia-sink-api-1.0-alpha-7.pom
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#14 403.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia/1.0-alpha-7/doxia-1.0-alpha-7.pom
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#14 403.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.pom
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#14 403.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.pom
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#14 403.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.7/maven-repository-metadata-2.0.7.pom
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#14 403.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.pom
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#14 403.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.pom
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#14 403.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.pom
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#14 403.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.pom
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#14 403.8 Downloading from central: https://repo.maven.apache.org/maven2/commons-cli/commons-cli/1.0/commons-cli-1.0.pom
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#14 403.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.7/maven-plugin-api-2.0.7.pom
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#14 403.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.7/maven-plugin-descriptor-2.0.7.pom
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#14 403.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.pom
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#14 404.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-components/17/maven-shared-components-17.pom
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#14 404.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.6/maven-artifact-2.0.6.pom
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#14 404.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/2.0.6/maven-core-2.0.6.pom
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#14 404.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.6/maven-settings-2.0.6.pom
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#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar
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#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar
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#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.jar
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#14 405.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.jar
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#14 405.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar
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#14 405.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar
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#14 405.0 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.2/plexus-io-2.0.2.jar
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#14 405.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/2.1/maven-dependency-tree-2.1.jar
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#14 405.0 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar (231 kB at 1.3 MB/s)
#14 405.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.pom
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#14 405.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-providers/3.5.2/wagon-providers-3.5.2.pom
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#14 405.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon/3.5.2/wagon-3.5.2.pom
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#14 405.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.pom
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#14 405.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity-api/1.1/plexus-interactivity-api-1.1.pom
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#14 405.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity/1.1/plexus-interactivity-1.1.pom
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#14 405.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-components/6.5/plexus-components-6.5.pom
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#14 405.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/6.5/plexus-6.5.pom
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/6.5/plexus-6.5.pom (26 kB at 1.0 MB/s)
#14 405.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-provider-api/3.5.2/wagon-provider-api-3.5.2.pom
#14 405.4 Progress (1): 1.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-provider-api/3.5.2/wagon-provider-api-3.5.2.pom (1.9 kB at 76 kB/s)
#14 405.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.jar
#14 405.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-provider-api/3.5.2/wagon-provider-api-3.5.2.jar
#14 405.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity-api/1.1/plexus-interactivity-api-1.1.jar
#14 405.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.jar
#14 405.4 Progress (1): 4.1/9.4 kB
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#14 405.4 [output clipped, log limit 2MiB reached]
#14 496.4 SLF4J: No SLF4J providers were found.
#14 496.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 496.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 505.9s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.1s
#16 [12/13] RUN ant jars tools
#16 0.735 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.150 [echo] isSnapshot = true
#16 1.252
#16 1.252 copy-jars:
#16 1.252
#16 1.252 deps-formats-api:
#16 1.333 [echo] isSnapshot = true
#16 1.390
#16 1.390 install-pom:
#16 1.588 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 1.596 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 1.601 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.602
#16 1.602 jar-formats-api:
#16 1.713 [echo] isSnapshot = true
#16 1.894
#16 1.894 init-title:
#16 1.894 [echo] ----------=========== formats-api ===========----------
#16 1.895
#16 1.895 init-timestamp:
#16 1.899
#16 1.899 init:
#16 1.899
#16 1.899 copy-resources:
#16 1.900 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.914 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.917
#16 1.917 compile:
#16 2.097 [resolver:resolve] Resolving artifacts
#16 2.124 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.811 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.811 [javac] import loci.common.ReflectedUniverse;
#16 2.811 [javac] ^
#16 2.912 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.912 [javac] int currentIndex = r.getCoreIndex();
#16 2.912 [javac] ^
#16 2.912 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.912 [javac] r.setCoreIndex(coreIndex);
#16 2.912 [javac] ^
#16 2.912 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.912 [javac] r.setCoreIndex(currentIndex);
#16 2.912 [javac] ^
#16 3.013 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.013 [javac] public void setCoreIndex(int no) {
#16 3.013 [javac] ^
#16 3.113 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.113 [javac] public int getCoreIndex() {
#16 3.113 [javac] ^
#16 3.113 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.113 [javac] public int coreIndexToSeries(int index)
#16 3.113 [javac] ^
#16 3.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.114 [javac] public int seriesToCoreIndex(int series)
#16 3.114 [javac] ^
#16 3.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.114 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.114 [javac] ^
#16 3.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.114 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.114 [javac] ^
#16 3.114 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.115 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.115 [javac] ^
#16 3.115 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.115 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.115 [javac] ^
#16 3.115 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.115 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.115 [javac] ^
#16 3.216 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.216 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.216 [javac] ^
#16 3.216 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.216 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.216 [javac] ^
#16 3.316 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.316 [javac] public void setCoreIndex(int no) {
#16 3.316 [javac] ^
#16 3.317 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.317 [javac] public int getCoreIndex() {
#16 3.317 [javac] ^
#16 3.317 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.317 [javac] public int coreIndexToSeries(int index) {
#16 3.317 [javac] ^
#16 3.317 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.317 [javac] public int seriesToCoreIndex(int series) {
#16 3.318 [javac] ^
#16 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.318 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.318 [javac] ^
#16 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:589: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.318 [javac] return getReader().getCoreMetadataList();
#16 3.318 [javac] ^
#16 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:769: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.318 [javac] return getReader().getCoreIndex();
#16 3.318 [javac] ^
#16 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:775: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.318 [javac] getReader().setCoreIndex(no);
#16 3.318 [javac] ^
#16 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:780: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.319 [javac] return getReader().seriesToCoreIndex(series);
#16 3.319 [javac] ^
#16 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.319 [javac] return getReader().coreIndexToSeries(index);
#16 3.319 [javac] ^
#16 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.319 [javac] public void setCoreIndex(int no) {
#16 3.319 [javac] ^
#16 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.319 [javac] public int getCoreIndex() {
#16 3.319 [javac] ^
#16 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.319 [javac] public int coreIndexToSeries(int index) {
#16 3.319 [javac] ^
#16 3.319 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.319 [javac] public int seriesToCoreIndex(int series) {
#16 3.320 [javac] ^
#16 3.320 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.320 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.320 [javac] ^
#16 3.420 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.420 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.420 [javac] ^
#16 3.420 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.420 [javac] return reader.getCoreIndex();
#16 3.420 [javac] ^
#16 3.420 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.421 [javac] reader.setCoreIndex(no);
#16 3.421 [javac] ^
#16 3.421 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.421 [javac] return reader.seriesToCoreIndex(series);
#16 3.421 [javac] ^
#16 3.421 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.421 [javac] return reader.coreIndexToSeries(index);
#16 3.421 [javac] ^
#16 3.521 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.521 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.521 [javac] 35 warnings
#16 3.556
#16 3.556 formats-api.jar:
#16 3.557 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.584 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.617 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 3.621 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 3.651 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 3.653 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.655 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.656
#16 3.656 deps-turbojpeg:
#16 3.656
#16 3.656 jar-turbojpeg:
#16 3.761 [echo] isSnapshot = true
#16 3.935
#16 3.935 init-title:
#16 3.935 [echo] ----------=========== turbojpeg ===========----------
#16 3.935
#16 3.935 init-timestamp:
#16 3.935
#16 3.935 init:
#16 3.936
#16 3.936 copy-resources:
#16 3.936 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.937
#16 3.937 compile:
#16 3.948 [resolver:resolve] Resolving artifacts
#16 3.952 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.691
#16 4.691 jar:
#16 4.697 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.883 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 4.892 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 4.896 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 4.898 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.902 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.904
#16 4.904 deps-formats-bsd:
#16 4.904
#16 4.904 jar-formats-bsd:
#16 5.002 [echo] isSnapshot = true
#16 5.172
#16 5.172 init-title:
#16 5.172 [echo] ----------=========== formats-bsd ===========----------
#16 5.172
#16 5.172 init-timestamp:
#16 5.172
#16 5.172 init:
#16 5.172
#16 5.172 copy-resources:
#16 5.172 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.176 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.176
#16 5.176 compile:
#16 5.384 [resolver:resolve] Resolving artifacts
#16 5.418 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.528 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.528 [javac] import loci.common.ReflectedUniverse;
#16 6.528 [javac] ^
#16 6.928 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.928 [javac] core.size() != reader.getCoreMetadataList().size())
#16 6.928 [javac] ^
#16 6.928 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.928 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.929 [javac] ^
#16 6.929 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.929 [javac] int n = reader.getCoreMetadataList().size();
#16 6.929 [javac] ^
#16 6.929 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.929 [javac] reader.setCoreIndex(coreIndex);
#16 6.929 [javac] ^
#16 6.929 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.929 [javac] int n = reader.getCoreMetadataList().size();
#16 6.929 [javac] ^
#16 6.929 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.929 [javac] int n = reader.getCoreMetadataList().size();
#16 6.929 [javac] ^
#16 6.929 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.929 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.929 [javac] ^
#16 6.929 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.929 [javac] int n = reader.getCoreMetadataList().size();
#16 6.929 [javac] ^
#16 6.929 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.930 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.930 [javac] ^
#16 6.930 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.930 [javac] int n = reader.getCoreMetadataList().size();
#16 6.930 [javac] ^
#16 6.930 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.930 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.930 [javac] ^
#16 6.930 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.930 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.930 [javac] ^
#16 6.930 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.930 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.930 [javac] ^
#16 6.930 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.930 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 6.930 [javac] ^
#16 6.930 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.930 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.930 [javac] ^
#16 6.931 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.931 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 6.931 [javac] ^
#16 6.931 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.931 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.931 [javac] ^
#16 6.931 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.931 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.931 [javac] ^
#16 6.931 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.931 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.931 [javac] ^
#16 7.131 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.131 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.131 [javac] ^
#16 7.131 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.131 [javac] BitWriter out = new BitWriter();
#16 7.131 [javac] ^
#16 7.131 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.131 [javac] BitWriter out = new BitWriter();
#16 7.131 [javac] ^
#16 8.133 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.133 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.133 [javac] ^
#16 8.133 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.133 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.133 [javac] ^
#16 8.233 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.233 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.233 [javac] ^
#16 8.233 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.233 [javac] protected ReflectedUniverse r;
#16 8.233 [javac] ^
#16 8.233 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.233 [javac] r = new ReflectedUniverse();
#16 8.233 [javac] ^
#16 8.334 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 8.334 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.334 [javac] ^
#16 8.334 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 8.334 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.334 [javac] ^
#16 8.334 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 8.334 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.334 [javac] ^
#16 8.334 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 8.334 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.334 [javac] ^
#16 8.334 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 8.334 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.334 [javac] ^
#16 8.334 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 8.334 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.334 [javac] ^
#16 8.335 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 8.335 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.335 [javac] ^
#16 8.335 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 8.335 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.335 [javac] ^
#16 8.335 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.335 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.335 [javac] ^
#16 8.435 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.435 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.435 [javac] ^
#16 8.535 [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.535 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.535 [javac] 38 warnings
#16 8.574
#16 8.574 formats-bsd.jar:
#16 8.583 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.693 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 8.698 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 8.713 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 8.715 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 8.717 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.718
#16 8.718 deps-formats-gpl:
#16 8.718
#16 8.718 jar-formats-gpl:
#16 8.813 [echo] isSnapshot = true
#16 8.981
#16 8.981 init-title:
#16 8.981 [echo] ----------=========== formats-gpl ===========----------
#16 8.981
#16 8.981 init-timestamp:
#16 8.982
#16 8.982 init:
#16 8.982
#16 8.982 copy-resources:
#16 8.982 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.983 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.984
#16 8.984 compile:
#16 9.446 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.681 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.719 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 10.29 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.30 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.31 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.33 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.47 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.57 [resolver:resolve] Resolving artifacts
#16 10.58 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.58 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.62 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.62 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.65 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.65 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 11.06 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.06 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 11.08 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 12.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.19 [javac] import loci.formats.codec.BitWriter;
#16 12.19 [javac] ^
#16 12.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 12.19 [javac] import loci.formats.codec.BitWriter;
#16 12.19 [javac] ^
#16 13.89 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 13.89 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 13.89 [javac] ^
#16 13.89 [javac] cast to Object for a varargs call
#16 13.89 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 13.89 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:398: warning: [deprecation] NM in UNITS has been deprecated
#16 13.89 [javac] final Length offsetX = new Length(i.vOffsetX, UNITS.NM);
#16 13.89 [javac] ^
#16 13.89 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:399: warning: [deprecation] NM in UNITS has been deprecated
#16 13.89 [javac] final Length offsetY = new Length(i.vOffsetY, UNITS.NM);
#16 13.89 [javac] ^
#16 13.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.99 [javac] BitWriter bits = null;
#16 13.99 [javac] ^
#16 13.99 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.99 [javac] bits = new BitWriter(planes[index].length / 8);
#16 13.99 [javac] ^
#16 14.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:692: warning: [deprecation] MM in UNITS has been deprecated
#16 14.09 [javac] Length yPos = FormatTools.getStagePosition(physicalDistanceFromTopEdge, UNITS.MM);
#16 14.09 [javac] ^
#16 14.09 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:698: warning: [deprecation] MM in UNITS has been deprecated
#16 14.09 [javac] Length xPos = FormatTools.getStagePosition(physicalDistanceFromLeftEdge, UNITS.MM);
#16 14.09 [javac] ^
#16 14.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 14.19 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 14.19 [javac] ^
#16 14.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:298: warning: [deprecation] NM in UNITS has been deprecated
#16 14.19 [javac] int actualWidth = (int) (stitchedWidth / physicalSizeX.value(UNITS.NM).doubleValue());
#16 14.19 [javac] ^
#16 14.19 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:299: warning: [deprecation] NM in UNITS has been deprecated
#16 14.19 [javac] int actualHeight = (int) (stitchedHeight / physicalSizeY.value(UNITS.NM).doubleValue());
#16 14.19 [javac] ^
#16 14.29 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OperettaReader.java:1202: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 14.29 [javac] protected AcquisitionMode getAcquisitionMode(String mode) throws FormatException {
#16 14.29 [javac] ^
#16 14.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.59 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.59 [javac] ^
#16 14.59 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.59 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.59 [javac] ^
#16 14.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 14.85 [javac] List<Attribute> attributes = variable.getAttributes();
#16 14.85 [javac] ^
#16 14.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.85 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 14.85 [javac] ^
#16 14.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.85 [javac] String groupName = group.getName();
#16 14.85 [javac] ^
#16 14.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 14.85 [javac] List<Attribute> attributes = group.getAttributes();
#16 14.85 [javac] ^
#16 14.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.85 [javac] String attributeName = attribute.getName();
#16 14.85 [javac] ^
#16 14.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.85 [javac] String variableName = variable.getName();
#16 14.85 [javac] ^
#16 14.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 14.85 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 14.85 [javac] ^
#16 14.85 [javac] Note: Some input files use unchecked or unsafe operations.
#16 14.85 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 14.85 [javac] 22 warnings
#16 14.85
#16 14.85 formats-gpl.jar:
#16 14.86 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 15.00 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 15.01 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 15.01 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 15.01 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 15.01 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 15.02
#16 15.02 deps-bio-formats-plugins:
#16 15.02
#16 15.02 jar-bio-formats-plugins:
#16 15.11 [echo] isSnapshot = true
#16 15.28
#16 15.28 init-title:
#16 15.28 [echo] ----------=========== bio-formats_plugins ===========----------
#16 15.28
#16 15.28 init-timestamp:
#16 15.28
#16 15.28 init:
#16 15.28
#16 15.28 copy-resources:
#16 15.28 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.28 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.28
#16 15.28 compile:
#16 15.52 [resolver:resolve] Resolving artifacts
#16 15.54 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 16.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.35 [javac] import loci.common.ReflectedUniverse;
#16 16.35 [javac] ^
#16 16.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.35 [javac] import loci.common.ReflectedUniverse;
#16 16.35 [javac] ^
#16 16.85 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 16.85 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 16.85 [javac] ^
#16 16.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.95 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.95 [javac] ^
#16 16.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.95 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.95 [javac] ^
#16 17.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.05 [javac] ^
#16 17.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 17.05 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 17.05 [javac] ^
#16 17.35 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 17.35 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 17.35 [javac] 7 warnings
#16 17.35
#16 17.35 bio-formats-plugins.jar:
#16 17.35 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 17.39 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 17.39 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 17.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 17.40 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 17.40 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 17.40
#16 17.40 deps-bio-formats-tools:
#16 17.40
#16 17.40 jar-bio-formats-tools:
#16 17.50 [echo] isSnapshot = true
#16 17.67
#16 17.67 init-title:
#16 17.67 [echo] ----------=========== bio-formats-tools ===========----------
#16 17.67
#16 17.67 init-timestamp:
#16 17.67
#16 17.67 init:
#16 17.67
#16 17.67 copy-resources:
#16 17.67 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.67
#16 17.67 compile:
#16 17.93 [resolver:resolve] Resolving artifacts
#16 17.94 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.95
#16 18.95 bio-formats-tools.jar:
#16 18.95 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 18.96 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 18.96 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 18.97 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 18.97 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 18.97 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 18.97
#16 18.97 deps-tests:
#16 18.97
#16 18.97 jar-tests:
#16 19.07 [echo] isSnapshot = true
#16 19.26
#16 19.26 init-title:
#16 19.26 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 19.26
#16 19.26 init-timestamp:
#16 19.26
#16 19.26 init:
#16 19.26
#16 19.26 copy-resources:
#16 19.26 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 19.26
#16 19.26 compile:
#16 19.61 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.69 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.71 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.13 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.55 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 20.58 [resolver:resolve] Resolving artifacts
#16 20.59 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.63 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.65 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.06 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.44 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 21.44 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.36 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.36 [javac] int index = unflattenedReader.getCoreIndex();
#16 22.36 [javac] ^
#16 22.36 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 22.36 [javac] reader.setCoreIndex(index);
#16 22.36 [javac] ^
#16 22.56 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.56 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.56 [javac] ^
#16 22.56 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.56 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.56 [javac] ^
#16 22.86 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.86 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 22.86 [javac] ^
#16 22.86 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.86 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 22.86 [javac] ^
#16 22.86 [javac] Note: Some input files use unchecked or unsafe operations.
#16 22.86 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.86 [javac] 6 warnings
#16 22.87
#16 22.87 tests.jar:
#16 22.87 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 22.89 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 22.89 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 22.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 22.90 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.90 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 22.90
#16 22.90 jars:
#16 22.90
#16 22.90 copy-jars:
#16 22.90
#16 22.90 deps-formats-api:
#16 22.95 [echo] isSnapshot = true
#16 23.00
#16 23.00 install-pom:
#16 23.17 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 23.17 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.18 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 23.18
#16 23.18 jar-formats-api:
#16 23.28 [echo] isSnapshot = true
#16 23.46
#16 23.46 init-title:
#16 23.46 [echo] ----------=========== formats-api ===========----------
#16 23.46
#16 23.46 init-timestamp:
#16 23.46
#16 23.46 init:
#16 23.46
#16 23.46 copy-resources:
#16 23.46
#16 23.46 compile:
#16 23.62 [resolver:resolve] Resolving artifacts
#16 23.63
#16 23.63 formats-api.jar:
#16 23.64 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 23.65 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 23.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 23.65 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.65 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 23.65
#16 23.65 deps-turbojpeg:
#16 23.65
#16 23.65 jar-turbojpeg:
#16 23.94 [echo] isSnapshot = true
#16 24.11
#16 24.11 init-title:
#16 24.11 [echo] ----------=========== turbojpeg ===========----------
#16 24.11
#16 24.11 init-timestamp:
#16 24.11
#16 24.11 init:
#16 24.11
#16 24.11 copy-resources:
#16 24.11
#16 24.11 compile:
#16 24.12 [resolver:resolve] Resolving artifacts
#16 24.12
#16 24.12 jar:
#16 24.12 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 24.13 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 24.13 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 24.14 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.14 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 24.14
#16 24.14 deps-formats-bsd:
#16 24.14
#16 24.14 jar-formats-bsd:
#16 24.23 [echo] isSnapshot = true
#16 24.39
#16 24.39 init-title:
#16 24.39 [echo] ----------=========== formats-bsd ===========----------
#16 24.39
#16 24.39 init-timestamp:
#16 24.39
#16 24.39 init:
#16 24.39
#16 24.39 copy-resources:
#16 24.39
#16 24.39 compile:
#16 24.59 [resolver:resolve] Resolving artifacts
#16 24.61
#16 24.61 formats-bsd.jar:
#16 24.64 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 24.65 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 24.65 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 24.65 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.65 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 24.65
#16 24.65 deps-formats-gpl:
#16 24.65
#16 24.65 jar-formats-gpl:
#16 24.74 [echo] isSnapshot = true
#16 24.91
#16 24.91 init-title:
#16 24.91 [echo] ----------=========== formats-gpl ===========----------
#16 24.91
#16 24.91 init-timestamp:
#16 24.91
#16 24.91 init:
#16 24.91
#16 24.91 copy-resources:
#16 24.91
#16 24.91 compile:
#16 25.15 [resolver:resolve] Resolving artifacts
#16 25.17
#16 25.17 formats-gpl.jar:
#16 25.20 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 25.21 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 25.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 25.21 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.21 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 25.21
#16 25.21 deps-bio-formats-plugins:
#16 25.21
#16 25.21 jar-bio-formats-plugins:
#16 25.30 [echo] isSnapshot = true
#16 25.47
#16 25.47 init-title:
#16 25.47 [echo] ----------=========== bio-formats_plugins ===========----------
#16 25.47
#16 25.47 init-timestamp:
#16 25.47
#16 25.47 init:
#16 25.47
#16 25.47 copy-resources:
#16 25.48
#16 25.48 compile:
#16 25.73 [resolver:resolve] Resolving artifacts
#16 25.75
#16 25.75 bio-formats-plugins.jar:
#16 25.76 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 25.76 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 25.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 25.77 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.77 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 25.77
#16 25.77 deps-bio-formats-tools:
#16 25.77
#16 25.77 jar-bio-formats-tools:
#16 25.86 [echo] isSnapshot = true
#16 26.03
#16 26.03 init-title:
#16 26.03 [echo] ----------=========== bio-formats-tools ===========----------
#16 26.03
#16 26.03 init-timestamp:
#16 26.03
#16 26.03 init:
#16 26.03
#16 26.03 copy-resources:
#16 26.03
#16 26.03 compile:
#16 26.29 [resolver:resolve] Resolving artifacts
#16 26.30
#16 26.30 bio-formats-tools.jar:
#16 26.31 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 26.31 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 26.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 26.31 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.31 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 26.32
#16 26.32 deps-tests:
#16 26.32
#16 26.32 jar-tests:
#16 26.41 [echo] isSnapshot = true
#16 26.57
#16 26.57 init-title:
#16 26.57 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 26.57
#16 26.57 init-timestamp:
#16 26.57
#16 26.57 init:
#16 26.57
#16 26.57 copy-resources:
#16 26.57
#16 26.57 compile:
#16 26.84 [resolver:resolve] Resolving artifacts
#16 26.85
#16 26.85 tests.jar:
#16 26.86 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.87 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.87 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.87 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.87 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.87
#16 26.87 jars:
#16 26.87
#16 26.87 tools:
#16 26.87 [echo] ----------=========== bioformats_package ===========----------
#16 26.97 [echo] isSnapshot = true
#16 27.15
#16 27.15 init-timestamp:
#16 27.15
#16 27.15 bundle:
#16 27.44 [resolver:resolve] Resolving artifacts
#16 27.46 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.49 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.51 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.54 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.54 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.61 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.63 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.68 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.69 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.93 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.98 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.00 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.06 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.07 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.09 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.09 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.27 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.77 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.78 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.78 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.79 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.87 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.88 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.89 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.95 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.00 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.02 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.03 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.18 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.20 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.28 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.32 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.36 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.84 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.86 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.97 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.04 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.14 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.16 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.18 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.42 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.50 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.56 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.65 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.3-SNAPSHOT/ome-mdbtools-5.3.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.67 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.7-SNAPSHOT/metakit-5.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.67 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.9-SNAPSHOT/ome-poi-5.3.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.80 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.81 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.25 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.26 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.38 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.43 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.44 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.45 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.61 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.63 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.64 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.65 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.65 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.08 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.19 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.51 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.51 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.11 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 39.12 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 39.16 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 39.19 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 39.19 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.20
#16 39.20 BUILD SUCCESSFUL
#16 39.20 Total time: 38 seconds
#16 DONE 41.3s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.4s done
#18 writing image sha256:3d2d1c02efcaffa043998228034f9b02314afd0a786c080fb46e788656ae774a done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.4s
Finished: SUCCESS
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