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#14 387.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/3.3/plexus-3.3.pom
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#14 387.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/2.5.0/maven-bundle-plugin-2.5.0.jar
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#14 387.5 Downloading from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.jar
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/2.0.7/maven-settings-2.0.7.jar (49 kB at 1.7 MB/s)
#14 387.5 Progress (4): 153 kB | 201/350 kB | 172/175 kB | 0.1/1.8 MB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar
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#14 387.5 Progress (3): 350 kB | 175 kB | 0.3/1.8 MB
                                          
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#14 387.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar
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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.jar
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#14 387.6 Progress (3): 1.0/1.8 MB | 35 kB | 86 kB
                                        
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#14 387.6 Progress (3): 1.0/1.8 MB | 35 kB | 86 kB
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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar
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#14 387.6 Progress (2): 1.2/1.8 MB | 88 kB
                                
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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar
#14 387.6 Progress (3): 1.4/1.8 MB | 24 kB | 14 kB
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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/commons-cli/commons-cli/1.0/commons-cli-1.0.jar
#14 387.6 Progress (3): 1.5/1.8 MB | 14 kB | 57/117 kB
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#14 387.6 Progress (2): 1.6/1.8 MB | 74/117 kB
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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-descriptor/2.0.7/maven-plugin-descriptor-2.0.7.jar
#14 387.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar (29 kB at 256 kB/s)
#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact-manager/2.0.7/maven-artifact-manager-2.0.7.jar
#14 387.6 Downloaded from central: https://repo.maven.apache.org/maven2/biz/aQute/bnd/bndlib/2.3.0/bndlib-2.3.0.jar (1.8 MB at 15 MB/s)
#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar
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#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/2.5/maven-archiver-2.5.jar
#14 387.6 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-api/2.0.7/maven-plugin-api-2.0.7.jar (13 kB at 107 kB/s)
#14 387.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar
#14 387.6 Progress (1): 4.1/37 kB
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#14 387.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar (231 kB at 1.3 MB/s)
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#14 387.9 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity-api/1.1/plexus-interactivity-api-1.1.pom
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#14 388.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.jar (15 kB at 562 kB/s)
#14 388.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.jar (26 kB at 905 kB/s)
#14 388.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-provider-api/3.5.2/wagon-provider-api-3.5.2.jar (55 kB at 1.9 MB/s)
#14 388.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.13/nexus-staging-maven-plugin-1.6.13.pom
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#14 388.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/maven/nexus-staging/1.6.13/nexus-staging-1.6.13.pom
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#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/inject/containers/2.3.0/containers-2.3.0.pom
#14 388.4 Progress (1): 1.2 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/inject/containers/2.3.0/containers-2.3.0.pom (1.2 kB at 48 kB/s)
#14 388.4 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-inject/2.3.0/sisu-inject-2.3.0.pom
#14 388.5 Progress (1): 3.2 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-inject/2.3.0/sisu-inject-2.3.0.pom (3.2 kB at 129 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-parent/2.3.0/sisu-parent-2.3.0.pom
#14 388.5 Progress (1): 4.1/11 kB
Progress (1): 8.2/11 kB
Progress (1): 11 kB    
                   
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-parent/2.3.0/sisu-parent-2.3.0.pom (11 kB at 408 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-inject-bean/2.3.0/sisu-inject-bean-2.3.0.pom
#14 388.5 Progress (1): 4.1/7.1 kB
Progress (1): 7.1 kB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/sisu-inject-bean/2.3.0/sisu-inject-bean-2.3.0.pom (7.1 kB at 285 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.0.4/maven-compat-3.0.4.pom
#14 388.5 Progress (1): 3.7 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-compat/3.0.4/maven-compat-3.0.4.pom (3.7 kB at 142 kB/s)
#14 388.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.0.4/maven-model-builder-3.0.4.pom
#14 388.6 Progress (1): 2.5 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model-builder/3.0.4/maven-model-builder-3.0.4.pom (2.5 kB at 103 kB/s)
#14 388.6 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.0.4/maven-settings-3.0.4.pom
#14 388.6 Progress (1): 1.8 kB
                    
Downloaded from central: https:
#14 388.6 [output clipped, log limit 2MiB reached]
#14 481.7 SLF4J: No SLF4J providers were found.
#14 481.7 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 481.7 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 492.2s

#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s

#16 [12/13] RUN ant jars tools
#16 0.404 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.902      [echo] isSnapshot = true
#16 1.008 
#16 1.008 copy-jars:
#16 1.008 
#16 1.008 deps-formats-api:
#16 1.092      [echo] isSnapshot = true
#16 1.151 
#16 1.151 install-pom:
#16 1.356 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 1.363 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 1.368 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.370 
#16 1.370 jar-formats-api:
#16 1.484      [echo] isSnapshot = true
#16 1.669 
#16 1.669 init-title:
#16 1.670      [echo] ----------=========== formats-api ===========----------
#16 1.670 
#16 1.670 init-timestamp:
#16 1.674 
#16 1.674 init:
#16 1.674 
#16 1.674 copy-resources:
#16 1.675     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.690      [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 1.692 
#16 1.692 compile:
#16 1.877 [resolver:resolve] Resolving artifacts
#16 1.905     [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.591     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 2.591     [javac] import loci.common.ReflectedUniverse;
#16 2.591     [javac]                   ^
#16 2.791     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.791     [javac]     int currentIndex = r.getCoreIndex();
#16 2.791     [javac]                         ^
#16 2.791     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.792     [javac]     r.setCoreIndex(coreIndex);
#16 2.792     [javac]      ^
#16 2.792     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.792     [javac]     r.setCoreIndex(currentIndex);
#16 2.792     [javac]      ^
#16 2.892     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.892     [javac]   public void setCoreIndex(int no) {
#16 2.892     [javac]               ^
#16 2.892     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 2.892     [javac]   public int getCoreIndex() {
#16 2.892     [javac]              ^
#16 2.892     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 2.892     [javac]   public int coreIndexToSeries(int index)
#16 2.893     [javac]              ^
#16 2.893     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 2.893     [javac]   public int seriesToCoreIndex(int series)
#16 2.893     [javac]              ^
#16 2.893     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.893     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 2.893     [javac]                             ^
#16 2.993     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.993     [javac]     if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 2.993     [javac]                                              ^
#16 2.993     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 2.993     [javac]     if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 2.993     [javac]                                              ^
#16 2.994     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.994     [javac]       core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 2.994     [javac]                                                      ^
#16 2.994     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 2.994     [javac]       core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 2.994     [javac]                                                      ^
#16 3.094     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.094     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.094     [javac]     ^
#16 3.094     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.094     [javac]     ReflectedUniverse r = new ReflectedUniverse();
#16 3.094     [javac]                               ^
#16 3.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.195     [javac]   public void setCoreIndex(int no) {
#16 3.195     [javac]               ^
#16 3.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.195     [javac]   public int getCoreIndex() {
#16 3.195     [javac]              ^
#16 3.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.195     [javac]   public int coreIndexToSeries(int index) {
#16 3.195     [javac]              ^
#16 3.195     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.196     [javac]   public int seriesToCoreIndex(int series) {
#16 3.196     [javac]              ^
#16 3.196     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.196     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.196     [javac]                             ^
#16 3.196     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:589: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.196     [javac]     return getReader().getCoreMetadataList();
#16 3.196     [javac]                       ^
#16 3.196     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:769: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.196     [javac]     return getReader().getCoreIndex();
#16 3.196     [javac]                       ^
#16 3.196     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:775: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.196     [javac]     getReader().setCoreIndex(no);
#16 3.196     [javac]                ^
#16 3.196     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:780: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.197     [javac]     return getReader().seriesToCoreIndex(series);
#16 3.197     [javac]                       ^
#16 3.197     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.197     [javac]     return getReader().coreIndexToSeries(index);
#16 3.197     [javac]                       ^
#16 3.297     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.297     [javac]   public void setCoreIndex(int no) {
#16 3.297     [javac]               ^
#16 3.297     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.297     [javac]   public int getCoreIndex() {
#16 3.297     [javac]              ^
#16 3.297     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.297     [javac]   public int coreIndexToSeries(int index) {
#16 3.297     [javac]              ^
#16 3.297     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.298     [javac]   public int seriesToCoreIndex(int series) {
#16 3.298     [javac]              ^
#16 3.298     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.298     [javac]   public List<CoreMetadata> getCoreMetadataList() {
#16 3.298     [javac]                             ^
#16 3.298     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.298     [javac]     List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.298     [javac]                                        ^
#16 3.298     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.298     [javac]     return reader.getCoreIndex();
#16 3.298     [javac]                  ^
#16 3.298     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.298     [javac]     reader.setCoreIndex(no);
#16 3.298     [javac]           ^
#16 3.298     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.298     [javac]     return reader.seriesToCoreIndex(series);
#16 3.298     [javac]                  ^
#16 3.298     [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.298     [javac]     return reader.coreIndexToSeries(index);
#16 3.298     [javac]                  ^
#16 3.399     [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.399     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.399     [javac] 35 warnings
#16 3.418 
#16 3.418 formats-api.jar:
#16 3.418     [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.444       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 3.477 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 3.482 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 3.529 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 3.531 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.533 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 3.534 
#16 3.534 deps-turbojpeg:
#16 3.534 
#16 3.534 jar-turbojpeg:
#16 3.641      [echo] isSnapshot = true
#16 3.815 
#16 3.815 init-title:
#16 3.815      [echo] ----------=========== turbojpeg ===========----------
#16 3.815 
#16 3.815 init-timestamp:
#16 3.815 
#16 3.815 init:
#16 3.815 
#16 3.815 copy-resources:
#16 3.815     [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 3.817 
#16 3.817 compile:
#16 3.827 [resolver:resolve] Resolving artifacts
#16 3.831     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.568 
#16 4.568 jar:
#16 4.573       [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 4.760 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 4.769 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 4.795 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 4.798 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 4.802 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 4.803 
#16 4.803 deps-formats-bsd:
#16 4.803 
#16 4.803 jar-formats-bsd:
#16 4.904      [echo] isSnapshot = true
#16 5.082 
#16 5.082 init-title:
#16 5.083      [echo] ----------=========== formats-bsd ===========----------
#16 5.083 
#16 5.083 init-timestamp:
#16 5.083 
#16 5.083 init:
#16 5.083 
#16 5.083 copy-resources:
#16 5.083     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.087      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.087 
#16 5.087 compile:
#16 5.299 [resolver:resolve] Resolving artifacts
#16 5.331     [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 6.441     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 6.441     [javac] import loci.common.ReflectedUniverse;
#16 6.441     [javac]                   ^
#16 6.741     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.741     [javac]       core.size() != reader.getCoreMetadataList().size())
#16 6.741     [javac]                            ^
#16 6.741     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.741     [javac]       List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 6.741     [javac]                                          ^
#16 6.741     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.741     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.741     [javac]                   ^
#16 6.742     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.742     [javac]     reader.setCoreIndex(coreIndex);
#16 6.742     [javac]           ^
#16 6.742     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.742     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.742     [javac]                   ^
#16 6.742     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.742     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.742     [javac]                   ^
#16 6.742     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 6.742     [javac]     if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 6.742     [javac]                                         ^
#16 6.742     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.742     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.742     [javac]                   ^
#16 6.742     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 6.742     [javac]     if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 6.742     [javac]                                         ^
#16 6.742     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.742     [javac]     int n = reader.getCoreMetadataList().size();
#16 6.743     [javac]                   ^
#16 6.743     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 6.743     [javac]     if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 6.743     [javac]                                  ^
#16 6.743     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.743     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.743     [javac]                  ^
#16 6.743     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 6.743     [javac]     return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 6.743     [javac]                                              ^
#16 6.743     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.743     [javac]     return noStitch ? reader.getCoreMetadataList() : core;
#16 6.743     [javac]                             ^
#16 6.743     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.743     [javac]     if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 6.743     [javac]               ^
#16 6.743     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.743     [javac]       seriesCount = reader.getCoreMetadataList().size();
#16 6.743     [javac]                           ^
#16 6.743     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.743     [javac]       if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 6.743     [javac]                 ^
#16 6.744     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.744     [javac]     if (reader.getCoreMetadataList().size() > 1) return 0;
#16 6.744     [javac]               ^
#16 6.744     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.744     [javac]       r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 6.744     [javac]                            ^
#16 6.844     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 6.844     [javac]     int seriesCount = unwrap().getCoreMetadataList().size();
#16 6.844     [javac]                               ^
#16 6.945     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.945     [javac]     BitWriter out = new BitWriter();
#16 6.945     [javac]     ^
#16 6.945     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 6.945     [javac]     BitWriter out = new BitWriter();
#16 6.945     [javac]                         ^
#16 7.846     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.846     [javac]       OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 7.846     [javac]                                                                    ^
#16 7.846     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 7.846     [javac]     StreamTokenizer st = new StreamTokenizer(in);
#16 7.846     [javac]                          ^
#16 7.946     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.946     [javac]     core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 7.946     [javac]                                                    ^
#16 7.946     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.946     [javac]   protected ReflectedUniverse r;
#16 7.946     [javac]             ^
#16 7.946     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.947     [javac]       r = new ReflectedUniverse();
#16 7.947     [javac]               ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 8.047     [javac]           wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.047     [javac]                                                                               ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 8.047     [javac]           sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.047     [javac]                                                                                ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 8.047     [javac]         String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.047     [javac]                                                                                   ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 8.047     [javac]         String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.047     [javac]                                                                                   ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 8.047     [javac]         volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.047     [javac]                                                                                        ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 8.047     [javac]         volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.047     [javac]                                                                                         ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 8.047     [javac]         volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.047     [javac]                                                                                        ^
#16 8.047     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 8.048     [javac]             offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.048     [javac]                                                                                                               ^
#16 8.048     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.048     [javac]             offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.048     [javac]                                                                                                               ^
#16 8.148     [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.148     [javac]       libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.148     [javac]                                        ^
#16 8.248     [javac] Note: Some input files use unchecked or unsafe operations.
#16 8.248     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 8.248     [javac] 38 warnings
#16 8.285 
#16 8.285 formats-bsd.jar:
#16 8.293       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 8.405 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 8.409 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 8.415 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 8.416 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 8.419 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 8.419 
#16 8.419 deps-formats-gpl:
#16 8.419 
#16 8.419 jar-formats-gpl:
#16 8.517      [echo] isSnapshot = true
#16 8.690 
#16 8.690 init-title:
#16 8.690      [echo] ----------=========== formats-gpl ===========----------
#16 8.690 
#16 8.690 init-timestamp:
#16 8.690 
#16 8.690 init:
#16 8.690 
#16 8.690 copy-resources:
#16 8.690     [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.692      [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 8.692 
#16 8.692 compile:
#16 9.147 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.385 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.424 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 9.996 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.02 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.04 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 10.17 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 10.27 [resolver:resolve] Resolving artifacts
#16 10.28 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.28 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.32 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.32 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.35 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 10.35 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 10.76 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 10.76 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 10.78     [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.79     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.79     [javac] import loci.formats.codec.BitWriter;
#16 11.79     [javac]                          ^
#16 11.79     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.79     [javac] import loci.formats.codec.BitWriter;
#16 11.79     [javac]                          ^
#16 13.49     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 13.49     [javac]       LOGGER.trace("Parsing tokens: {}", tokens);
#16 13.49     [javac]                                          ^
#16 13.49     [javac]   cast to Object for a varargs call
#16 13.49     [javac]   cast to Object[] for a non-varargs call and to suppress this warning
#16 13.49     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:398: warning: [deprecation] NM in UNITS has been deprecated
#16 13.49     [javac]         final Length offsetX = new Length(i.vOffsetX, UNITS.NM);
#16 13.49     [javac]                                                            ^
#16 13.49     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:399: warning: [deprecation] NM in UNITS has been deprecated
#16 13.49     [javac]         final Length offsetY = new Length(i.vOffsetY, UNITS.NM);
#16 13.49     [javac]                                                            ^
#16 13.59     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.59     [javac]     BitWriter bits = null;
#16 13.59     [javac]     ^
#16 13.59     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.59     [javac]       bits = new BitWriter(planes[index].length / 8);
#16 13.59     [javac]                  ^
#16 13.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:692: warning: [deprecation] MM in UNITS has been deprecated
#16 13.69     [javac]           Length yPos = FormatTools.getStagePosition(physicalDistanceFromTopEdge, UNITS.MM);
#16 13.69     [javac]                                                                                        ^
#16 13.69     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:698: warning: [deprecation] MM in UNITS has been deprecated
#16 13.69     [javac]           Length xPos = FormatTools.getStagePosition(physicalDistanceFromLeftEdge, UNITS.MM);
#16 13.69     [javac]                                                                                         ^
#16 13.79     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 13.79     [javac]     CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 13.79     [javac]                                                    ^
#16 13.79     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:298: warning: [deprecation] NM in UNITS has been deprecated
#16 13.79     [javac]           int actualWidth = (int) (stitchedWidth / physicalSizeX.value(UNITS.NM).doubleValue());
#16 13.79     [javac]                                                                             ^
#16 13.79     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:299: warning: [deprecation] NM in UNITS has been deprecated
#16 13.79     [javac]           int actualHeight = (int) (stitchedHeight / physicalSizeY.value(UNITS.NM).doubleValue());
#16 13.79     [javac]                                                                               ^
#16 13.89     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OperettaReader.java:1202: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 13.89     [javac]   protected AcquisitionMode getAcquisitionMode(String mode) throws FormatException {
#16 13.89     [javac]                             ^
#16 14.19     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.19     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.19     [javac]     ^
#16 14.19     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.19     [javac]     BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 14.19     [javac]                          ^
#16 14.39     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 14.39     [javac]       List<Attribute> attributes = variable.getAttributes();
#16 14.39     [javac]                                            ^
#16 14.39     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.39     [javac]         toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 14.39     [javac]                               ^
#16 14.39     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.39     [javac]       String groupName = group.getName();
#16 14.39     [javac]                               ^
#16 14.39     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 14.39     [javac]       List<Attribute> attributes = group.getAttributes();
#16 14.39     [javac]                                         ^
#16 14.39     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.39     [javac]         String attributeName = attribute.getName();
#16 14.39     [javac]                                         ^
#16 14.39     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.39     [javac]         String variableName = variable.getName();
#16 14.39     [javac]                                       ^
#16 14.39     [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 14.39     [javac]     netCDFFile = NetcdfFile.open(currentId);
#16 14.39     [javac]                            ^
#16 14.39     [javac] Note: Some input files use unchecked or unsafe operations.
#16 14.39     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 14.39     [javac] 22 warnings
#16 14.42 
#16 14.42 formats-gpl.jar:
#16 14.43       [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 14.57 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 14.57 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 14.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 14.58 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 14.58 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 14.58 
#16 14.58 deps-bio-formats-plugins:
#16 14.58 
#16 14.58 jar-bio-formats-plugins:
#16 14.68      [echo] isSnapshot = true
#16 14.85 
#16 14.85 init-title:
#16 14.85      [echo] ----------=========== bio-formats_plugins ===========----------
#16 14.85 
#16 14.85 init-timestamp:
#16 14.85 
#16 14.85 init:
#16 14.85 
#16 14.85 copy-resources:
#16 14.85     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.85      [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.86 
#16 14.86 compile:
#16 15.10 [resolver:resolve] Resolving artifacts
#16 15.12     [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.93     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.93     [javac] import loci.common.ReflectedUniverse;
#16 15.93     [javac]                   ^
#16 15.93     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.93     [javac] import loci.common.ReflectedUniverse;
#16 15.93     [javac]                   ^
#16 16.43     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 16.43     [javac]     "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 16.43     [javac]                                      ^
#16 16.53     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.53     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 16.53     [javac]         ^
#16 16.53     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.53     [javac]         ReflectedUniverse r = new ReflectedUniverse();
#16 16.53     [javac]                                   ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.63     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 16.63     [javac]     ^
#16 16.63     [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.63     [javac]     ReflectedUniverse ru = new ReflectedUniverse();
#16 16.63     [javac]                                ^
#16 16.83     [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 16.83     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.83     [javac] 7 warnings
#16 16.86 
#16 16.86 bio-formats-plugins.jar:
#16 16.86       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 16.89 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 16.90 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 16.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 16.90 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.91 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 16.91 
#16 16.91 deps-bio-formats-tools:
#16 16.91 
#16 16.91 jar-bio-formats-tools:
#16 17.03      [echo] isSnapshot = true
#16 17.20 
#16 17.20 init-title:
#16 17.20      [echo] ----------=========== bio-formats-tools ===========----------
#16 17.20 
#16 17.20 init-timestamp:
#16 17.20 
#16 17.20 init:
#16 17.20 
#16 17.20 copy-resources:
#16 17.20     [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.20 
#16 17.20 compile:
#16 17.47 [resolver:resolve] Resolving artifacts
#16 17.49     [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.49 
#16 18.49 bio-formats-tools.jar:
#16 18.49       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 18.50 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 18.50 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 18.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 18.51 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 18.51 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 18.51 
#16 18.51 deps-tests:
#16 18.51 
#16 18.51 jar-tests:
#16 18.61      [echo] isSnapshot = true
#16 18.79 
#16 18.79 init-title:
#16 18.79      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 18.79 
#16 18.79 init-timestamp:
#16 18.79 
#16 18.79 init:
#16 18.79 
#16 18.79 copy-resources:
#16 18.79     [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 18.79 
#16 18.79 compile:
#16 19.16 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.24 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.26 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.67 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.08 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 20.11 [resolver:resolve] Resolving artifacts
#16 20.12 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.16 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.17 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.59 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.96 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 20.97     [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.88     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 21.88     [javac]         int index = unflattenedReader.getCoreIndex();
#16 21.88     [javac]                                      ^
#16 21.88     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 21.88     [javac]         reader.setCoreIndex(index);
#16 21.88     [javac]               ^
#16 22.08     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.08     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 22.08     [javac]                                              ^
#16 22.08     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.08     [javac]             config.setSeries(resolutionReader.getCoreIndex());
#16 22.08     [javac]                                              ^
#16 22.28     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.28     [javac]         FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 22.28     [javac]                                                    ^
#16 22.28     [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.29     [javac]         FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 22.29     [javac]                                                    ^
#16 22.38     [javac] Note: Some input files use unchecked or unsafe operations.
#16 22.38     [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.38     [javac] 6 warnings
#16 22.38 
#16 22.38 tests.jar:
#16 22.38       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 22.40 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 22.40 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 22.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 22.41 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.41 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 22.41 
#16 22.41 jars:
#16 22.41 
#16 22.41 copy-jars:
#16 22.41 
#16 22.41 deps-formats-api:
#16 22.46      [echo] isSnapshot = true
#16 22.51 
#16 22.51 install-pom:
#16 22.67 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 22.67 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 22.68 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 22.68 
#16 22.68 jar-formats-api:
#16 22.77      [echo] isSnapshot = true
#16 22.94 
#16 22.94 init-title:
#16 22.94      [echo] ----------=========== formats-api ===========----------
#16 22.94 
#16 22.94 init-timestamp:
#16 22.94 
#16 22.94 init:
#16 22.94 
#16 22.94 copy-resources:
#16 22.94 
#16 22.94 compile:
#16 23.08 [resolver:resolve] Resolving artifacts
#16 23.09 
#16 23.09 formats-api.jar:
#16 23.11 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 23.11 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 23.12 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 23.12 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.12 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 23.12 
#16 23.12 deps-turbojpeg:
#16 23.12 
#16 23.12 jar-turbojpeg:
#16 23.36      [echo] isSnapshot = true
#16 23.54 
#16 23.54 init-title:
#16 23.54      [echo] ----------=========== turbojpeg ===========----------
#16 23.54 
#16 23.54 init-timestamp:
#16 23.54 
#16 23.54 init:
#16 23.54 
#16 23.54 copy-resources:
#16 23.54 
#16 23.54 compile:
#16 23.55 [resolver:resolve] Resolving artifacts
#16 23.55 
#16 23.55 jar:
#16 23.56 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 23.57 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 23.57 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 23.57 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 23.57 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 23.57 
#16 23.57 deps-formats-bsd:
#16 23.57 
#16 23.57 jar-formats-bsd:
#16 23.66      [echo] isSnapshot = true
#16 23.83 
#16 23.83 init-title:
#16 23.83      [echo] ----------=========== formats-bsd ===========----------
#16 23.83 
#16 23.83 init-timestamp:
#16 23.83 
#16 23.83 init:
#16 23.83 
#16 23.83 copy-resources:
#16 23.83 
#16 23.83 compile:
#16 24.02 [resolver:resolve] Resolving artifacts
#16 24.04 
#16 24.04 formats-bsd.jar:
#16 24.07 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 24.08 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 24.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 24.08 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.08 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 24.09 
#16 24.09 deps-formats-gpl:
#16 24.09 
#16 24.09 jar-formats-gpl:
#16 24.17      [echo] isSnapshot = true
#16 24.34 
#16 24.34 init-title:
#16 24.34      [echo] ----------=========== formats-gpl ===========----------
#16 24.34 
#16 24.34 init-timestamp:
#16 24.34 
#16 24.34 init:
#16 24.34 
#16 24.34 copy-resources:
#16 24.34 
#16 24.34 compile:
#16 24.56 [resolver:resolve] Resolving artifacts
#16 24.58 
#16 24.58 formats-gpl.jar:
#16 24.62 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 24.62 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 24.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 24.62 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.63 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 24.63 
#16 24.63 deps-bio-formats-plugins:
#16 24.63 
#16 24.63 jar-bio-formats-plugins:
#16 24.72      [echo] isSnapshot = true
#16 24.88 
#16 24.88 init-title:
#16 24.88      [echo] ----------=========== bio-formats_plugins ===========----------
#16 24.88 
#16 24.88 init-timestamp:
#16 24.88 
#16 24.88 init:
#16 24.88 
#16 24.88 copy-resources:
#16 24.88 
#16 24.88 compile:
#16 25.12 [resolver:resolve] Resolving artifacts
#16 25.14 
#16 25.14 bio-formats-plugins.jar:
#16 25.15 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 25.15 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 25.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 25.16 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.16 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 25.16 
#16 25.16 deps-bio-formats-tools:
#16 25.16 
#16 25.16 jar-bio-formats-tools:
#16 25.25      [echo] isSnapshot = true
#16 25.42 
#16 25.42 init-title:
#16 25.42      [echo] ----------=========== bio-formats-tools ===========----------
#16 25.42 
#16 25.42 init-timestamp:
#16 25.42 
#16 25.42 init:
#16 25.42 
#16 25.42 copy-resources:
#16 25.42 
#16 25.42 compile:
#16 25.65 [resolver:resolve] Resolving artifacts
#16 25.66 
#16 25.66 bio-formats-tools.jar:
#16 25.67 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 25.67 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 25.67 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 25.67 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.68 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 25.68 
#16 25.68 deps-tests:
#16 25.68 
#16 25.68 jar-tests:
#16 25.77      [echo] isSnapshot = true
#16 25.93 
#16 25.93 init-title:
#16 25.93      [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 25.93 
#16 25.93 init-timestamp:
#16 25.93 
#16 25.93 init:
#16 25.93 
#16 25.93 copy-resources:
#16 25.93 
#16 25.93 compile:
#16 26.18 [resolver:resolve] Resolving artifacts
#16 26.19 
#16 26.19 tests.jar:
#16 26.20 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 26.20 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 26.20 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 26.20 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.21 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.21 
#16 26.21 jars:
#16 26.21 
#16 26.21 tools:
#16 26.21      [echo] ----------=========== bioformats_package ===========----------
#16 26.30      [echo] isSnapshot = true
#16 26.47 
#16 26.47 init-timestamp:
#16 26.47 
#16 26.47 bundle:
#16 26.72 [resolver:resolve] Resolving artifacts
#16 26.73     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.76     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.78     [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.81     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.81     [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.88     [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.89     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.95     [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 26.96     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.19     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.24     [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.26     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.32     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.33     [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.34     [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.34     [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.52     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.02     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.02     [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.02     [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.03     [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.12     [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.12     [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.13     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.19     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.24     [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.26     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.27     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.41     [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.43     [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.51     [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.55     [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.55     [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.59     [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.61     [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.11     [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.13     [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.16     [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23     [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.34     [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.35     [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.37     [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.38     [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.61     [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.69     [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.75     [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.84     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.3-SNAPSHOT/ome-mdbtools-5.3.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.86     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.7-SNAPSHOT/metakit-5.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.86     [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.9-SNAPSHOT/ome-poi-5.3.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.99     [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.00     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.45     [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.46     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58     [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63     [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.64     [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.65     [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.81     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.83     [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.84     [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.85     [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.85     [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.88     [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.28     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.40     [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.71       [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 37.57    [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 38.23 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 38.24 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 38.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 38.29 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 38.29 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 38.29 
#16 38.29 BUILD SUCCESSFUL
#16 38.29 Total time: 37 seconds
#16 DONE 39.0s

#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s

#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:3f4f4a9964a9f22f2101e3667d4031e318077500d2dd968fe9a5f049697181e5 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.3s
Finished: SUCCESS