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#14 398.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-providers-git/1.13.0/maven-scm-providers-git-1.13.0.pom
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#14 398.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/scm/maven-scm-provider-git-commons/1.13.0/maven-scm-provider-git-commons-1.13.0.pom
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#14 400.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-db/2.14.3-02/nexus-buildsupport-db-2.14.3-02.pom
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#14 400.7 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-gwt/2.14.3-02/nexus-buildsupport-gwt-2.14.3-02.pom
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#14 400.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-httpclient/2.14.3-02/nexus-buildsupport-httpclient-2.14.3-02.pom
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#14 401.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-insight/2.14.3-02/nexus-buildsupport-insight-2.14.3-02.pom
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#14 401.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-bouncycastle/2.14.3-02/nexus-buildsupport-bouncycastle-2.14.3-02.pom
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#14 402.1 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-jetty/2.14.3-02/nexus-buildsupport-jetty-2.14.3-02.pom
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#14 402.3 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-goodies/2.14.3-02/nexus-buildsupport-goodies-2.14.3-02.pom
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#14 402.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-groovy/2.14.3-02/nexus-buildsupport-groovy-2.14.3-02.pom
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#14 402.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-guice/2.14.3-02/nexus-buildsupport-guice-2.14.3-02.pom
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#14 402.8 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-logging/2.14.3-02/nexus-buildsupport-logging-2.14.3-02.pom
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#14 403.0 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-osgi/2.14.3-02/nexus-buildsupport-osgi-2.14.3-02.pom
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#14 403.2 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-other/2.14.3-02/nexus-buildsupport-other-2.14.3-02.pom
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#14 403.4 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-plexus/2.14.3-02/nexus-buildsupport-plexus-2.14.3-02.pom
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#14 403.6 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-rest/2.14.3-02/nexus-buildsupport-rest-2.14.3-02.pom
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#14 403.9 Downloading from rso-public-grid: https://repository.sonatype.org/content/groups/sonatype-public-grid/org/sonatype/nexus/buildsupport/nexus-buildsupport-metrics/2.14.3-02/nexus-buildsupport-metrics-2.14.3-02.pom
#14 404.0 Progress (1): 3.0 kB
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#14 404.1 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-restlet1x-model/2.14.3-02/nexus-restlet1x-model-2.14.3-02.pom
#14 404.1 Progress (1): 3.5 kB
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#14 404.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-plugins-restlet1x/2.14.3-02/nexus-plugins-restlet1x-2.14.3-02.pom
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#14 404.2 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/nexus/plugins/nexus-plugins/2.14.3-02/nexus-plugins-2.14.3-02.pom
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#14 404.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.0.4/maven-model-3.0.4.pom
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#14 404.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven/3.0.4/maven-3.0.4.pom
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#14 404.3 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.7/slf4j-api-1.7.7.pom
#14 404.3 Progress (1): 2.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.7.7/slf4j-api-1.7.7.pom (2.7 kB at 112 kB/s)
#14 404.4 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.7.7/slf4j-parent-1.7.7.pom
#14 404.4 Progress (1): 4.1/12 kB
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#14 404.4 Downloading from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.pom
#14 404.4 Progress (1): 1.2 kB
Downloaded from central: https://repo.maven.apache.org/maven2/com/intellij/annotations/9.0.4/annotations-9.0.4.pom (1.2 kB at 47 kB/s)
#14 404.4 Downloading from central: https://repo.maven.apache.org/maven2/com/thoughtworks/xstream/xstream/1.4.7/xstream-1.4.7.pom
#14 404.4 Progress (1): 4.1/11 kB
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#14 404.4 Downloading from central: https://repo.maven.apache.org/maven2/com/thoughtworks/xstream/xstream-parent/1.4.7/xstream-parent-1.4.7.pom
#14 404.5 Progress (1): 4.1/26 kB
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#14 404.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/codehaus-parent/3/codehaus-parent-3.pom
#14 404.5 Progress (1): 4.1/4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/codehaus-parent/3/codehaus-parent-3.pom (4.1 kB at 171 kB/s)
#14 404.5 Downloading from central: https://repo.maven.apache.org/maven2/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.pom
#14 404.5 Progress (1): 386 B
Downloaded from central: https://repo.maven.apache.org/maven2/xmlpull/xmlpull/1.1.3.1/xmlpull-1.1.3.1.pom (386 B at 15 kB/s)
#14 404.5 Downloading from central: https://repo.maven.apache.org/maven2/xpp3/xpp3_min/1.1.4c/xpp3_min-1.1.4c.pom
#14 404.5 Progress (1): 1.6 kB
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#14 404.5 Downloading from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.2/joda-time-2.2.pom
#14 404.6 Progress (1): 4.1/16 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/joda-time/joda-time/2.2/joda-time-2.2.pom (16 kB at 622 kB/s)
#14 404.6 Downloading from central: https://repo.maven.apache.org/maven2/commons-beanutils/commons-beanutils-core/1.8.3/commons-beanutils-core-1.8.3.pom
#14 404.6 Progress (1): 1.6 kB
Downloaded from central: https://repo.maven.apache.org/maven2/commons-beanutils/commons-beanutils-core/1.8.3/commons-beanutils-core-1.8.3.pom (1.6 kB at 63 kB/s)
#14 404.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-client/1.7/siesta-client-1.7.pom
#14 404.6 Progress (1): 1.8 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-client/1.7/siesta-client-1.7.pom (1.8 kB at 76 kB/s)
#14 404.6 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta/1.7/siesta-1.7.pom
#14 404.6 Progress (1): 4.1/12 kB
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#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/public-parent/5/public-parent-5.pom
#14 404.7 Progress (1): 760 B
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#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/buildsupport/buildsupport/5/buildsupport-5.pom
#14 404.7 Progress (1): 4.1/22 kB
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#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-common/1.7/siesta-common-1.7.pom
#14 404.7 Progress (1): 2.1 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/sisu/siesta/siesta-common/1.7/siesta-common-1.7.pom (2.1 kB at 86 kB/s)
#14 404.7 Downloading from central: https://repo.maven.apache.org/maven2/javax/ws/rs/jsr311-api/1.1.1/jsr311-api-1.1.1.pom
#14 404.8 Progress (1): 4.1/5.5 kB
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#14 404.8 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-core/1.17.1/jersey-core-1.17.1.pom
#14 404.8 Progress (1): 4.1/10 kB
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#14 404.8 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-project/1.17.1/jersey-project-1.17.1.pom
#14 404.8 Progress (1): 4.1/21 kB
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#14 404.8 Downloading from central: https://repo.maven.apache.org/maven2/net/java/jvnet-parent/1/jvnet-parent-1.pom
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#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.pom
#14 404.9 Progress (1): 4.1/7.9 kB
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#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/jersey-client/1.17.1/jersey-client-1.17.1.pom
#14 404.9 Progress (1): 4.1/6.7 kB
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#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-apache-client4/1.17.1/jersey-apache-client4-1.17.1.pom
#14 404.9 Progress (1): 4.1/6.2 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/sun/jersey/contribs/jersey-apache-client4/1.17.1/jersey-apache-client4-1.17.1.pom (6.2 kB at 239 kB/s)
#14 404.9 Downloading from central: https://repo.maven.apache.org/maven2/com/sun/jersey/co
#14 405.0 [output clipped, log limit 2MiB reached]
#14 501.1 SLF4J: No SLF4J providers were found.
#14 501.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 501.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 512.1s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.705 Buildfile: /bio-formats-build/bioformats/build.xml
#16 1.440 [echo] isSnapshot = true
#16 1.546
#16 1.546 copy-jars:
#16 1.546
#16 1.546 deps-formats-api:
#16 1.627 [echo] isSnapshot = true
#16 1.687
#16 1.687 install-pom:
#16 1.891 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 1.897 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 1.902 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 1.904
#16 1.904 jar-formats-api:
#16 2.029 [echo] isSnapshot = true
#16 2.222
#16 2.222 init-title:
#16 2.223 [echo] ----------=========== formats-api ===========----------
#16 2.223
#16 2.223 init-timestamp:
#16 2.227
#16 2.227 init:
#16 2.227
#16 2.227 copy-resources:
#16 2.229 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.244 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 2.247
#16 2.247 compile:
#16 2.433 [resolver:resolve] Resolving artifacts
#16 2.461 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.184 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.184 [javac] import loci.common.ReflectedUniverse;
#16 3.184 [javac] ^
#16 3.284 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.284 [javac] int currentIndex = r.getCoreIndex();
#16 3.284 [javac] ^
#16 3.284 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.284 [javac] r.setCoreIndex(coreIndex);
#16 3.284 [javac] ^
#16 3.284 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.284 [javac] r.setCoreIndex(currentIndex);
#16 3.284 [javac] ^
#16 3.485 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.485 [javac] public void setCoreIndex(int no) {
#16 3.485 [javac] ^
#16 3.485 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.485 [javac] public int getCoreIndex() {
#16 3.485 [javac] ^
#16 3.485 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.485 [javac] public int coreIndexToSeries(int index)
#16 3.485 [javac] ^
#16 3.485 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.485 [javac] public int seriesToCoreIndex(int series)
#16 3.486 [javac] ^
#16 3.486 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.486 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.486 [javac] ^
#16 3.586 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.586 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 3.586 [javac] ^
#16 3.586 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.586 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 3.586 [javac] ^
#16 3.586 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.586 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 3.586 [javac] ^
#16 3.587 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.587 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 3.587 [javac] ^
#16 3.687 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.687 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.687 [javac] ^
#16 3.687 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 3.687 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 3.687 [javac] ^
#16 3.687 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.687 [javac] public void setCoreIndex(int no) {
#16 3.687 [javac] ^
#16 3.687 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.687 [javac] public int getCoreIndex() {
#16 3.688 [javac] ^
#16 3.688 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.688 [javac] public int coreIndexToSeries(int index) {
#16 3.688 [javac] ^
#16 3.688 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.688 [javac] public int seriesToCoreIndex(int series) {
#16 3.688 [javac] ^
#16 3.688 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.688 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.688 [javac] ^
#16 3.688 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.688 [javac] return getReader().getCoreMetadataList();
#16 3.689 [javac] ^
#16 3.689 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.689 [javac] return getReader().getCoreIndex();
#16 3.689 [javac] ^
#16 3.689 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.689 [javac] getReader().setCoreIndex(no);
#16 3.689 [javac] ^
#16 3.689 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.689 [javac] return getReader().seriesToCoreIndex(series);
#16 3.689 [javac] ^
#16 3.689 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.689 [javac] return getReader().coreIndexToSeries(index);
#16 3.689 [javac] ^
#16 3.790 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.790 [javac] public void setCoreIndex(int no) {
#16 3.790 [javac] ^
#16 3.790 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.790 [javac] public int getCoreIndex() {
#16 3.790 [javac] ^
#16 3.790 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.790 [javac] public int coreIndexToSeries(int index) {
#16 3.790 [javac] ^
#16 3.790 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.790 [javac] public int seriesToCoreIndex(int series) {
#16 3.790 [javac] ^
#16 3.791 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.791 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 3.791 [javac] ^
#16 3.791 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 3.791 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 3.791 [javac] ^
#16 3.791 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 3.791 [javac] return reader.getCoreIndex();
#16 3.791 [javac] ^
#16 3.791 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 3.791 [javac] reader.setCoreIndex(no);
#16 3.791 [javac] ^
#16 3.791 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 3.791 [javac] return reader.seriesToCoreIndex(series);
#16 3.791 [javac] ^
#16 3.792 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 3.792 [javac] return reader.coreIndexToSeries(index);
#16 3.792 [javac] ^
#16 3.952 [javac] Note: Some input files use unchecked or unsafe operations.
#16 3.952 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 3.952 [javac] 35 warnings
#16 3.953
#16 3.953 formats-api.jar:
#16 3.953 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 3.980 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 4.012 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 4.017 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 4.042 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 4.045 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 4.047 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 4.048
#16 4.048 deps-turbojpeg:
#16 4.048
#16 4.048 jar-turbojpeg:
#16 4.165 [echo] isSnapshot = true
#16 4.341
#16 4.341 init-title:
#16 4.341 [echo] ----------=========== turbojpeg ===========----------
#16 4.341
#16 4.341 init-timestamp:
#16 4.342
#16 4.342 init:
#16 4.342
#16 4.342 copy-resources:
#16 4.342 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 4.343
#16 4.343 compile:
#16 4.355 [resolver:resolve] Resolving artifacts
#16 4.359 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.108
#16 5.108 jar:
#16 5.113 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 5.301 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 5.310 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 5.376 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 5.379 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 5.383 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 5.384
#16 5.384 deps-formats-bsd:
#16 5.384
#16 5.384 jar-formats-bsd:
#16 5.489 [echo] isSnapshot = true
#16 5.668
#16 5.668 init-title:
#16 5.668 [echo] ----------=========== formats-bsd ===========----------
#16 5.668
#16 5.668 init-timestamp:
#16 5.669
#16 5.669 init:
#16 5.669
#16 5.669 copy-resources:
#16 5.669 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.672 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 5.674
#16 5.674 compile:
#16 5.885 [resolver:resolve] Resolving artifacts
#16 5.915 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.024 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 7.024 [javac] import loci.common.ReflectedUniverse;
#16 7.024 [javac] ^
#16 7.325 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.325 [javac] core.size() != reader.getCoreMetadataList().size())
#16 7.325 [javac] ^
#16 7.325 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.325 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 7.325 [javac] ^
#16 7.426 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.426 [javac] int n = reader.getCoreMetadataList().size();
#16 7.426 [javac] ^
#16 7.426 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.426 [javac] reader.setCoreIndex(coreIndex);
#16 7.426 [javac] ^
#16 7.426 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.426 [javac] int n = reader.getCoreMetadataList().size();
#16 7.426 [javac] ^
#16 7.426 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.426 [javac] int n = reader.getCoreMetadataList().size();
#16 7.426 [javac] ^
#16 7.426 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 7.426 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 7.426 [javac] ^
#16 7.426 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.426 [javac] int n = reader.getCoreMetadataList().size();
#16 7.426 [javac] ^
#16 7.427 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 7.427 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 7.427 [javac] ^
#16 7.427 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.427 [javac] int n = reader.getCoreMetadataList().size();
#16 7.427 [javac] ^
#16 7.427 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 7.427 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 7.427 [javac] ^
#16 7.427 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.427 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.427 [javac] ^
#16 7.427 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 7.427 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 7.427 [javac] ^
#16 7.427 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.427 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 7.427 [javac] ^
#16 7.427 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.428 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 7.428 [javac] ^
#16 7.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.428 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 7.428 [javac] ^
#16 7.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.428 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 7.428 [javac] ^
#16 7.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.428 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 7.428 [javac] ^
#16 7.428 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.428 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 7.428 [javac] ^
#16 7.528 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 7.528 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 7.529 [javac] ^
#16 7.729 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.729 [javac] BitWriter out = new BitWriter();
#16 7.729 [javac] ^
#16 7.729 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 7.729 [javac] BitWriter out = new BitWriter();
#16 7.729 [javac] ^
#16 8.630 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.630 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 8.630 [javac] ^
#16 8.630 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 8.630 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 8.630 [javac] ^
#16 8.730 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.730 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 8.730 [javac] ^
#16 8.730 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.730 [javac] protected ReflectedUniverse r;
#16 8.731 [javac] ^
#16 8.731 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.731 [javac] r = new ReflectedUniverse();
#16 8.731 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#16 8.831 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 8.831 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 8.831 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 8.831 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1088: warning: [deprecation] MM in UNITS has been deprecated
#16 8.831 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 8.831 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#16 8.831 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 8.831 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1108: warning: [deprecation] MM in UNITS has been deprecated
#16 8.831 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 8.831 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#16 8.831 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 8.831 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1118: warning: [deprecation] MM in UNITS has been deprecated
#16 8.831 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 8.831 [javac] ^
#16 8.831 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1166: warning: [deprecation] MM in UNITS has been deprecated
#16 8.831 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 8.832 [javac] ^
#16 8.832 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#16 8.832 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 8.832 [javac] ^
#16 8.932 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 8.932 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 8.932 [javac] ^
#16 9.005 [javac] Note: Some input files use unchecked or unsafe operations.
#16 9.005 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 9.005 [javac] 38 warnings
#16 9.006
#16 9.006 formats-bsd.jar:
#16 9.015 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 9.130 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 9.134 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 9.137 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 9.139 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 9.141 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 9.142
#16 9.142 deps-formats-gpl:
#16 9.142
#16 9.142 jar-formats-gpl:
#16 9.240 [echo] isSnapshot = true
#16 9.413
#16 9.413 init-title:
#16 9.414 [echo] ----------=========== formats-gpl ===========----------
#16 9.414
#16 9.414 init-timestamp:
#16 9.414
#16 9.414 init:
#16 9.414
#16 9.414 copy-resources:
#16 9.414 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.416 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 9.417
#16 9.417 compile:
#16 9.866 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.13 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#16 10.16 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.17 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.18 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#16 10.19 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.25 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.26 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#16 10.27 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#16 10.31 [resolver:resolve] Resolving artifacts
#16 10.32 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.32 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.38 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#16 10.38 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#16 10.39 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.39 [resolver:resolve] Downloaded https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#16 10.41 [javac] Compiling 174 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 11.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.52 [javac] import loci.formats.codec.BitWriter;
#16 11.52 [javac] ^
#16 11.62 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 11.62 [javac] import loci.formats.codec.BitWriter;
#16 11.62 [javac] ^
#16 13.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 13.22 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 13.22 [javac] ^
#16 13.22 [javac] cast to Object for a varargs call
#16 13.22 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 13.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.32 [javac] BitWriter bits = null;
#16 13.32 [javac] ^
#16 13.32 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.32 [javac] bits = new BitWriter(planes[index].length / 8);
#16 13.32 [javac] ^
#16 13.52 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 13.52 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 13.52 [javac] ^
#16 13.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.92 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.92 [javac] ^
#16 13.92 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 13.92 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 13.92 [javac] ^
#16 14.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 14.22 [javac] Variable variable = group.findVariable(variableName);
#16 14.22 [javac] ^
#16 14.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#16 14.22 [javac] Variable variable = group.findVariable(variableName);
#16 14.22 [javac] ^
#16 14.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 14.22 [javac] List<Attribute> attributes = variable.getAttributes();
#16 14.22 [javac] ^
#16 14.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.22 [javac] String groupName = group.getName();
#16 14.22 [javac] ^
#16 14.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#16 14.22 [javac] List<Attribute> attributes = group.getAttributes();
#16 14.22 [javac] ^
#16 14.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#16 14.22 [javac] String variableName = variable.getName();
#16 14.22 [javac] ^
#16 14.22 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#16 14.22 [javac] Group nextParent = parent.findGroup(token);
#16 14.22 [javac] ^
#16 14.22 [javac] Note: Some input files use unchecked or unsafe operations.
#16 14.22 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 14.22 [javac] 15 warnings
#16 14.26
#16 14.26 formats-gpl.jar:
#16 14.27 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 14.41 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 14.42 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 14.42 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 14.42 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 14.42 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 14.42
#16 14.42 deps-bio-formats-plugins:
#16 14.42
#16 14.42 jar-bio-formats-plugins:
#16 14.52 [echo] isSnapshot = true
#16 14.71
#16 14.71 init-title:
#16 14.71 [echo] ----------=========== bio-formats_plugins ===========----------
#16 14.71
#16 14.71 init-timestamp:
#16 14.71
#16 14.71 init:
#16 14.71
#16 14.71 copy-resources:
#16 14.71 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.71 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 14.71
#16 14.71 compile:
#16 14.96 [resolver:resolve] Resolving artifacts
#16 14.98 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 15.79 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.79 [javac] import loci.common.ReflectedUniverse;
#16 15.79 [javac] ^
#16 15.79 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 15.79 [javac] import loci.common.ReflectedUniverse;
#16 15.79 [javac] ^
#16 16.29 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 16.29 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 16.29 [javac] ^
#16 16.39 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.39 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.39 [javac] ^
#16 16.39 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.39 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 16.39 [javac] ^
#16 16.49 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.49 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.49 [javac] ^
#16 16.49 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 16.49 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 16.49 [javac] ^
#16 16.85 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 16.85 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.85 [javac] 7 warnings
#16 16.85
#16 16.85 bio-formats-plugins.jar:
#16 16.86 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 16.89 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 16.89 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 16.90 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 16.90 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 16.90 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 16.90
#16 16.90 deps-bio-formats-tools:
#16 16.90
#16 16.90 jar-bio-formats-tools:
#16 17.00 [echo] isSnapshot = true
#16 17.16
#16 17.16 init-title:
#16 17.16 [echo] ----------=========== bio-formats-tools ===========----------
#16 17.16
#16 17.16 init-timestamp:
#16 17.16
#16 17.16 init:
#16 17.16
#16 17.16 copy-resources:
#16 17.17 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 17.17
#16 17.17 compile:
#16 17.40 [resolver:resolve] Resolving artifacts
#16 17.41 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 18.47
#16 18.47 bio-formats-tools.jar:
#16 18.47 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 18.48 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 18.48 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 18.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 18.49 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 18.49 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 18.49
#16 18.49 deps-tests:
#16 18.49
#16 18.49 jar-tests:
#16 18.59 [echo] isSnapshot = true
#16 18.77
#16 18.77 init-title:
#16 18.77 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 18.77
#16 18.77 init-timestamp:
#16 18.77
#16 18.77 init:
#16 18.77
#16 18.77 copy-resources:
#16 18.77 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 18.78
#16 18.78 compile:
#16 19.12 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.21 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.23 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 19.87 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 20.31 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 20.34 [resolver:resolve] Resolving artifacts
#16 20.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.39 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.41 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 20.81 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 21.17 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 21.18 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 22.20 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.20 [javac] int index = unflattenedReader.getCoreIndex();
#16 22.20 [javac] ^
#16 22.20 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 22.20 [javac] reader.setCoreIndex(index);
#16 22.20 [javac] ^
#16 22.40 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2259: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.40 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.40 [javac] ^
#16 22.40 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2425: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 22.40 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 22.40 [javac] ^
#16 22.60 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.60 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 22.60 [javac] ^
#16 22.60 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 22.60 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 22.60 [javac] ^
#16 22.65 [javac] Note: Some input files use unchecked or unsafe operations.
#16 22.65 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 22.65 [javac] 6 warnings
#16 22.65
#16 22.65 tests.jar:
#16 22.66 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 22.67 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 22.67 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 22.68 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 22.68 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.68 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 22.69
#16 22.69 jars:
#16 22.69
#16 22.69 copy-jars:
#16 22.69
#16 22.69 deps-formats-api:
#16 22.74 [echo] isSnapshot = true
#16 22.79
#16 22.79 install-pom:
#16 22.97 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/pom-bio-formats-8.1.0-SNAPSHOT.pom
#16 22.97 [resolver:install] Installing ome:pom-bio-formats:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 22.98 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 22.98
#16 22.98 jar-formats-api:
#16 23.08 [echo] isSnapshot = true
#16 23.26
#16 23.26 init-title:
#16 23.26 [echo] ----------=========== formats-api ===========----------
#16 23.26
#16 23.26 init-timestamp:
#16 23.26
#16 23.26 init:
#16 23.26
#16 23.26 copy-resources:
#16 23.26
#16 23.26 compile:
#16 23.42 [resolver:resolve] Resolving artifacts
#16 23.43
#16 23.43 formats-api.jar:
#16 23.45 [resolver:install] Using default POM (ome:formats-api:8.1.0-SNAPSHOT)
#16 23.45 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.pom
#16 23.46 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar
#16 23.46 [resolver:install] Installing ome:formats-api:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.46 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 23.46
#16 23.46 deps-turbojpeg:
#16 23.46
#16 23.46 jar-turbojpeg:
#16 23.74 [echo] isSnapshot = true
#16 23.90
#16 23.90 init-title:
#16 23.90 [echo] ----------=========== turbojpeg ===========----------
#16 23.90
#16 23.90 init-timestamp:
#16 23.90
#16 23.90 init:
#16 23.90
#16 23.90 copy-resources:
#16 23.91
#16 23.91 compile:
#16 23.91 [resolver:resolve] Resolving artifacts
#16 23.92
#16 23.92 jar:
#16 23.92 [resolver:install] Using default POM (ome:turbojpeg:8.1.0-SNAPSHOT)
#16 23.93 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.pom
#16 23.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar
#16 23.93 [resolver:install] Installing ome:turbojpeg:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 23.94 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 23.94
#16 23.94 deps-formats-bsd:
#16 23.94
#16 23.94 jar-formats-bsd:
#16 24.03 [echo] isSnapshot = true
#16 24.20
#16 24.20 init-title:
#16 24.20 [echo] ----------=========== formats-bsd ===========----------
#16 24.20
#16 24.20 init-timestamp:
#16 24.20
#16 24.20 init:
#16 24.20
#16 24.20 copy-resources:
#16 24.20
#16 24.20 compile:
#16 24.39 [resolver:resolve] Resolving artifacts
#16 24.41
#16 24.41 formats-bsd.jar:
#16 24.44 [resolver:install] Using default POM (ome:formats-bsd:8.1.0-SNAPSHOT)
#16 24.45 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.pom
#16 24.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar
#16 24.45 [resolver:install] Installing ome:formats-bsd:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 24.45 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 24.45
#16 24.45 deps-formats-gpl:
#16 24.45
#16 24.45 jar-formats-gpl:
#16 24.54 [echo] isSnapshot = true
#16 24.71
#16 24.71 init-title:
#16 24.71 [echo] ----------=========== formats-gpl ===========----------
#16 24.71
#16 24.71 init-timestamp:
#16 24.71
#16 24.71 init:
#16 24.71
#16 24.71 copy-resources:
#16 24.71
#16 24.71 compile:
#16 24.94 [resolver:resolve] Resolving artifacts
#16 24.96
#16 24.96 formats-gpl.jar:
#16 24.99 [resolver:install] Using default POM (ome:formats-gpl:8.1.0-SNAPSHOT)
#16 25.00 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.pom
#16 25.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar
#16 25.00 [resolver:install] Installing ome:formats-gpl:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.00 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 25.00
#16 25.00 deps-bio-formats-plugins:
#16 25.00
#16 25.00 jar-bio-formats-plugins:
#16 25.09 [echo] isSnapshot = true
#16 25.26
#16 25.26 init-title:
#16 25.26 [echo] ----------=========== bio-formats_plugins ===========----------
#16 25.26
#16 25.26 init-timestamp:
#16 25.26
#16 25.26 init:
#16 25.26
#16 25.26 copy-resources:
#16 25.27
#16 25.27 compile:
#16 25.51 [resolver:resolve] Resolving artifacts
#16 25.52
#16 25.52 bio-formats-plugins.jar:
#16 25.53 [resolver:install] Using default POM (ome:bio-formats_plugins:8.1.0-SNAPSHOT)
#16 25.54 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.pom
#16 25.54 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar
#16 25.54 [resolver:install] Installing ome:bio-formats_plugins:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 25.54 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 25.54
#16 25.54 deps-bio-formats-tools:
#16 25.54
#16 25.54 jar-bio-formats-tools:
#16 25.64 [echo] isSnapshot = true
#16 25.80
#16 25.80 init-title:
#16 25.80 [echo] ----------=========== bio-formats-tools ===========----------
#16 25.80
#16 25.80 init-timestamp:
#16 25.80
#16 25.80 init:
#16 25.80
#16 25.80 copy-resources:
#16 25.80
#16 25.80 compile:
#16 26.05 [resolver:resolve] Resolving artifacts
#16 26.06
#16 26.06 bio-formats-tools.jar:
#16 26.06 [resolver:install] Using default POM (ome:bio-formats-tools:8.1.0-SNAPSHOT)
#16 26.07 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.pom
#16 26.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar
#16 26.07 [resolver:install] Installing ome:bio-formats-tools:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.07 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 26.07
#16 26.07 deps-tests:
#16 26.07
#16 26.07 jar-tests:
#16 26.17 [echo] isSnapshot = true
#16 26.34
#16 26.34 init-title:
#16 26.34 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 26.34
#16 26.34 init-timestamp:
#16 26.34
#16 26.34 init:
#16 26.34
#16 26.34 copy-resources:
#16 26.34
#16 26.34 compile:
#16 26.62 [resolver:resolve] Resolving artifacts
#16 26.63
#16 26.63 tests.jar:
#16 26.64 [resolver:install] Using default POM (ome:test-suite:8.1.0-SNAPSHOT)
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.pom
#16 26.64 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/test-suite-8.1.0-SNAPSHOT.jar
#16 26.64 [resolver:install] Installing ome:test-suite:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 26.65 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 26.65
#16 26.65 jars:
#16 26.65
#16 26.65 tools:
#16 26.65 [echo] ----------=========== bioformats_package ===========----------
#16 26.75 [echo] isSnapshot = true
#16 26.93
#16 26.93 init-timestamp:
#16 26.93
#16 26.93 bundle:
#16 27.20 [resolver:resolve] Resolving artifacts
#16 27.21 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.1.0-SNAPSHOT/bio-formats_plugins-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.25 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.25-SNAPSHOT/ome-common-6.0.25-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.27 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.29 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.30 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.37 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.39 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.44 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.45 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.74 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.89 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.91 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 27.99 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.00 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.09 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.12 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.30 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.82 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.82 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.87 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 28.99 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.08 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.09 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.10 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.7-SNAPSHOT/ome-xml-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.16 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.7-SNAPSHOT/specification-6.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.22 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.1.0-SNAPSHOT/formats-api-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.23 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.1-SNAPSHOT/ome-codecs-1.1.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5-SNAPSHOT/ome-jai-0.1.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.39 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.1.0-SNAPSHOT/formats-bsd-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.47 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.1.0-SNAPSHOT/turbojpeg-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.51 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.51 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.55 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.58 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.04 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.07 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.10 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.25 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.36 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.37 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.39 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.40 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.63 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.71 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.76 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.1.0-SNAPSHOT/formats-gpl-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.86 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/ome-mdbtools-5.3.4-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.88 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.8-SNAPSHOT/metakit-5.3.8-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.88 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/ome-poi-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.01 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.01 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.48 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.49 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.61 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.66 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.67 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.68 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.74 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.77 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.93 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.95 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.95 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.97 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.1.0-SNAPSHOT/bio-formats-tools-8.1.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.97 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.00 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.39 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.50 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.90 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 38.91 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 39.55 [resolver:install] Using default POM (ome:bioformats_package:8.1.0-SNAPSHOT)
#16 39.56 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.pom
#16 39.56 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/bioformats_package-8.1.0-SNAPSHOT.jar
#16 39.60 [resolver:install] Installing ome:bioformats_package:8.1.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.1.0-SNAPSHOT/maven-metadata-local.xml
#16 39.60 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 39.61
#16 39.61 BUILD SUCCESSFUL
#16 39.61 Total time: 38 seconds
#16 DONE 42.0s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 4.7s done
#18 writing image sha256:aa5d2c3746d869629d90932f9af67605f1ec7cafed8c7b305d7c9d8cb3abed30 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 4.7s
[33m1 warning found (use docker --debug to expand):
[0m - LegacyKeyValueFormat: "ENV key=value" should be used instead of legacy "ENV key value" format (line 30)
Finished: SUCCESS
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