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#15 400.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-decoration-model/1.4/doxia-decoration-model-1.4.jar
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#15 400.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-fml/1.4/doxia-module-fml-1.4.jar
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#15 400.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-analyzer/1.10/maven-dependency-analyzer-1.10.jar
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#15 400.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/3.0.1/maven-dependency-tree-3.0.1.jar
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#15 400.7 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml/1.4/doxia-module-xhtml-1.4.jar (15 kB at 101 kB/s)
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#15 400.9 [[1;34mINFO[m] Configured Artifact: org.openmicroscopy:ome-xml:6.6.1-SNAPSHOT:jar
#15 400.9 [[1;34mINFO[m] Configured Artifact: ome:formats-api:sources:8.6.0-SNAPSHOT:jar
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#15 400.9 [[1;34mINFO[m] Configured Artifact: ome:bio-formats-examples:sources:8.6.0-SNAPSHOT:jar
#15 400.9 [[1;34mINFO[m] Unpacking /bio-formats-build/ome-model/ome-xml/target/ome-xml-6.6.1-SNAPSHOT.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/ome-xml with includes "" and excludes ""
#15 401.0 [[1;34mINFO[m] Unpacking /bio-formats-build/bioformats/components/formats-api/target/formats-api-8.6.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-api with includes "" and excludes ""
#15 401.0 [[1;34mINFO[m] Unpacking /bio-formats-build/bioformats/components/formats-bsd/target/formats-bsd-8.6.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/unpacked/source/formats-bsd with includes "" and excludes ""
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#15 401.1 [[1;34mINFO[m] Unpacking /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.6.0-SNAPSHOT-sources.jar to /bio-formats-build/bio-formats-documentation/target/sphinx/developers/examples with includes "" and excludes ""
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#15 401.9 [[1;34mINFO[m] Changes detected - recompiling the module!
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#15 402.4 Parsing AFIReader
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#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NRRDReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NiftiReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NikonElementsTiffReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NikonReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/NikonTiffReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OBFReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OIRReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OMETiffReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OMEXMLReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OlympusTileReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OpenlabRawReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OpenlabReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OperettaReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/OxfordInstrumentsReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PCIReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PCORAWReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PCXReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PDSReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PGMReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PQBinReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PSDReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PerkinElmerReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PhotoshopTiffReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PictReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PovrayReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PrairieReader.rst: done.
#15 404.6 Writing /bio-formats-build/bio-formats-documentation/target/sphinx/metadata/PyramidTiffReader.rst: done.
#15 404.6 Writing /bio-formats-build/
#15 404.6 [output clipped, log limit 2MiB reached]
#15 447.4 SLF4J: No SLF4J providers were found.
#15 447.4 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 447.4 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 447.6 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 447.6 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 447.6 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 447.6 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 455.8s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.1s
#17 [13/14] RUN ant jars tools
#17 0.382 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.793 [echo] isSnapshot = true
#17 0.912
#17 0.912 copy-jars:
#17 0.912
#17 0.912 deps-formats-api:
#17 1.004 [echo] isSnapshot = true
#17 1.064
#17 1.064 install-pom:
#17 1.264 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 1.276 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 1.280 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.282
#17 1.282 jar-formats-api:
#17 1.404 [echo] isSnapshot = true
#17 1.576
#17 1.576 init-title:
#17 1.576 [echo] ----------=========== formats-api ===========----------
#17 1.576
#17 1.576 init-timestamp:
#17 1.586
#17 1.586 init:
#17 1.586
#17 1.586 copy-resources:
#17 1.587 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.603 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.605
#17 1.605 compile:
#17 1.774 [resolver:resolve] Resolving artifacts
#17 1.803 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.014 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 2.014 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 2.014 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 3.015 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.015 [javac] int currentIndex = r.getCoreIndex();
#17 3.015 [javac] ^
#17 3.015 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.015 [javac] r.setCoreIndex(coreIndex);
#17 3.015 [javac] ^
#17 3.015 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.015 [javac] r.setCoreIndex(currentIndex);
#17 3.015 [javac] ^
#17 3.116 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.116 [javac] public void setCoreIndex(int no) {
#17 3.116 [javac] ^
#17 3.116 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.116 [javac] public int getCoreIndex() {
#17 3.116 [javac] ^
#17 3.116 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.116 [javac] public int coreIndexToSeries(int index)
#17 3.116 [javac] ^
#17 3.116 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.116 [javac] public int seriesToCoreIndex(int series)
#17 3.116 [javac] ^
#17 3.117 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.117 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.117 [javac] ^
#17 3.217 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.217 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.217 [javac] ^
#17 3.217 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.217 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.217 [javac] ^
#17 3.217 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.217 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.218 [javac] ^
#17 3.218 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.218 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.218 [javac] ^
#17 3.318 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.318 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.318 [javac] ^
#17 3.418 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.419 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.419 [javac] ^
#17 3.419 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.419 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.419 [javac] ^
#17 3.519 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.519 [javac] public void setCoreIndex(int no) {
#17 3.519 [javac] ^
#17 3.519 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.519 [javac] public int getCoreIndex() {
#17 3.519 [javac] ^
#17 3.519 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.519 [javac] public int coreIndexToSeries(int index) {
#17 3.520 [javac] ^
#17 3.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.520 [javac] public int seriesToCoreIndex(int series) {
#17 3.520 [javac] ^
#17 3.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.520 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.520 [javac] ^
#17 3.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.520 [javac] return getReader().getCoreMetadataList();
#17 3.520 [javac] ^
#17 3.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.520 [javac] return getReader().getCoreIndex();
#17 3.520 [javac] ^
#17 3.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.520 [javac] getReader().setCoreIndex(no);
#17 3.520 [javac] ^
#17 3.520 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.521 [javac] return getReader().seriesToCoreIndex(series);
#17 3.521 [javac] ^
#17 3.521 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.521 [javac] return getReader().coreIndexToSeries(index);
#17 3.521 [javac] ^
#17 3.621 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.621 [javac] public void setCoreIndex(int no) {
#17 3.621 [javac] ^
#17 3.621 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.621 [javac] public int getCoreIndex() {
#17 3.621 [javac] ^
#17 3.621 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.622 [javac] public int coreIndexToSeries(int index) {
#17 3.622 [javac] ^
#17 3.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.622 [javac] public int seriesToCoreIndex(int series) {
#17 3.622 [javac] ^
#17 3.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.622 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.622 [javac] ^
#17 3.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.622 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.622 [javac] ^
#17 3.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.622 [javac] return reader.getCoreIndex();
#17 3.622 [javac] ^
#17 3.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.622 [javac] reader.setCoreIndex(no);
#17 3.622 [javac] ^
#17 3.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.622 [javac] return reader.seriesToCoreIndex(series);
#17 3.622 [javac] ^
#17 3.622 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.622 [javac] return reader.coreIndexToSeries(index);
#17 3.623 [javac] ^
#17 3.811 [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.811 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.811 [javac] 36 warnings
#17 3.812
#17 3.812 formats-api.jar:
#17 3.812 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.840 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 3.878 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 3.882 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 3.884 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 3.885 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 3.887 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 3.888
#17 3.888 deps-turbojpeg:
#17 3.888
#17 3.888 jar-turbojpeg:
#17 3.996 [echo] isSnapshot = true
#17 4.148
#17 4.148 init-title:
#17 4.148 [echo] ----------=========== turbojpeg ===========----------
#17 4.148
#17 4.148 init-timestamp:
#17 4.148
#17 4.148 init:
#17 4.148
#17 4.148 copy-resources:
#17 4.149 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.150
#17 4.150 compile:
#17 4.160 [resolver:resolve] Resolving artifacts
#17 4.163 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.365 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 4.365 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 4.366 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 5.166 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.166 [javac] protected void finalize() throws Throwable {
#17 5.166 [javac] ^
#17 5.166 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.167 [javac] super.finalize();
#17 5.167 [javac] ^
#17 5.167 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.167 [javac] protected void finalize() throws Throwable {
#17 5.167 [javac] ^
#17 5.167 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.167 [javac] super.finalize();
#17 5.167 [javac] ^
#17 5.197 [javac] 5 warnings
#17 5.197
#17 5.197 jar:
#17 5.201 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.391 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 5.399 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 5.401 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 5.403 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 5.407 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.408
#17 5.408 deps-formats-bsd:
#17 5.408
#17 5.408 jar-formats-bsd:
#17 5.535 [echo] isSnapshot = true
#17 5.693
#17 5.693 init-title:
#17 5.693 [echo] ----------=========== formats-bsd ===========----------
#17 5.693
#17 5.693 init-timestamp:
#17 5.694
#17 5.694 init:
#17 5.694
#17 5.694 copy-resources:
#17 5.694 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.698 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.698
#17 5.698 compile:
#17 5.930 [resolver:resolve] Resolving artifacts
#17 5.958 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.173 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 6.173 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 6.173 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 7.875 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.875 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.875 [javac] ^
#17 7.875 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.875 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.875 [javac] ^
#17 7.975 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.976 [javac] int n = reader.getCoreMetadataList().size();
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.976 [javac] reader.setCoreIndex(coreIndex);
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.976 [javac] int n = reader.getCoreMetadataList().size();
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.976 [javac] int n = reader.getCoreMetadataList().size();
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.976 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.976 [javac] int n = reader.getCoreMetadataList().size();
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.976 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.976 [javac] int n = reader.getCoreMetadataList().size();
#17 7.976 [javac] ^
#17 7.976 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.976 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.976 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.977 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.977 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.977 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.977 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.977 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.977 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.977 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.977 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.977 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.977 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.977 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.977 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.977 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.977 [javac] ^
#17 7.977 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.977 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.977 [javac] ^
#17 8.178 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.178 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 8.178 [javac] ^
#17 8.178 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:70: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.178 [javac] public static final String STABLE_VERSION = "6.6.0";
#17 8.178 [javac] ^
#17 8.178 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:101: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.178 [javac] public static final String OLD_TOOLS = "loci_tools.jar";
#17 8.178 [javac] ^
#17 8.178 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.178 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 8.178 [javac] ^
#17 8.178 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.178 [javac] URL url = new URL(urlPath);
#17 8.178 [javac] ^
#17 8.279 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.279 [javac] public class BitBuffer {
#17 8.279 [javac] ^
#17 8.279 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.279 [javac] public class BitWriter {
#17 8.279 [javac] ^
#17 8.279 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.279 [javac] BitWriter out = new BitWriter();
#17 8.279 [javac] ^
#17 8.279 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.279 [javac] BitWriter out = new BitWriter();
#17 8.279 [javac] ^
#17 8.379 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.380 [javac] return new Double(v);
#17 8.380 [javac] ^
#17 8.980 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2156: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.980 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.980 [javac] ^
#17 8.980 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2163: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.980 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.981 [javac] ^
#17 8.981 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2170: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.981 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.981 [javac] ^
#17 9.181 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.181 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 9.181 [javac] ^
#17 9.381 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.381 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 9.381 [javac] ^
#17 9.381 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1376: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.382 [javac] public MetadataStore getMetadataStoreForDisplay() {
#17 9.382 [javac] ^
#17 9.382 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1394: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.382 [javac] public MetadataStore getMetadataStoreForConversion() {
#17 9.382 [javac] ^
#17 9.382 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 9.382 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 9.382 [javac] ^
#17 9.482 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.482 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 9.482 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.583 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.583 [javac] protected ReflectedUniverse r;
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.583 [javac] r = new ReflectedUniverse();
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 9.583 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 9.583 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 9.583 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 9.583 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 9.583 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 9.583 [javac] ^
#17 9.583 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 9.584 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 9.584 [javac] ^
#17 9.584 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 9.584 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 9.584 [javac] ^
#17 9.584 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 9.584 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 9.584 [javac] ^
#17 9.584 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 9.584 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 9.584 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.684 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.684 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.684 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.684 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.684 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.684 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.684 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.684 [javac] ^
#17 9.785 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.785 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.785 [javac] ^
#17 9.785 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.785 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.785 [javac] ^
#17 9.785 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.785 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.785 [javac] ^
#17 9.863 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.863 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.863 [javac] 58 warnings
#17 9.863
#17 9.863 formats-bsd.jar:
#17 9.876 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 9.996 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 10.000 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 10.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 10.00 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 10.00 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 10.01
#17 10.01 deps-formats-gpl:
#17 10.01
#17 10.01 jar-formats-gpl:
#17 10.10 [echo] isSnapshot = true
#17 10.25
#17 10.25 init-title:
#17 10.25 [echo] ----------=========== formats-gpl ===========----------
#17 10.25
#17 10.25 init-timestamp:
#17 10.25
#17 10.25 init:
#17 10.25
#17 10.25 copy-resources:
#17 10.25 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.25 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.25
#17 10.25 compile:
#17 10.51 [resolver:resolve] Resolving artifacts
#17 10.53 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.74 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 10.74 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 10.74 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 14.55 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 14.55 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 14.55 [javac] ^
#17 14.55 [javac] cast to Object for a varargs call
#17 14.55 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 14.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.65 [javac] BitWriter bits = null;
#17 14.65 [javac] ^
#17 14.65 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.65 [javac] bits = new BitWriter(planes[index].length / 8);
#17 14.65 [javac] ^
#17 15.05 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 15.05 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 15.05 [javac] ^
#17 15.45 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 15.45 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 15.45 [javac] ^
#17 15.45 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 15.45 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 15.45 [javac] ^
#17 15.55 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.55 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 15.55 [javac] ^
#17 15.55 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.55 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 15.55 [javac] ^
#17 15.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 15.85 [javac] Variable variable = group.findVariable(variableName);
#17 15.85 [javac] ^
#17 15.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 15.85 [javac] Variable variable = group.findVariable(variableName);
#17 15.85 [javac] ^
#17 15.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 15.85 [javac] List<Attribute> attributes = variable.getAttributes();
#17 15.85 [javac] ^
#17 15.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 15.85 [javac] String groupName = group.getName();
#17 15.85 [javac] ^
#17 15.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 15.85 [javac] List<Attribute> attributes = group.getAttributes();
#17 15.85 [javac] ^
#17 15.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 15.85 [javac] String variableName = variable.getName();
#17 15.85 [javac] ^
#17 15.85 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 15.85 [javac] Group nextParent = parent.findGroup(token);
#17 15.85 [javac] ^
#17 15.85 [javac] Note: Some input files use unchecked or unsafe operations.
#17 15.85 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 15.85 [javac] 16 warnings
#17 15.87
#17 15.87 formats-gpl.jar:
#17 15.88 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 16.03 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 16.03 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 16.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 16.04 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 16.04 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 16.04
#17 16.04 deps-bio-formats-plugins:
#17 16.04
#17 16.04 jar-bio-formats-plugins:
#17 16.13 [echo] isSnapshot = true
#17 16.28
#17 16.28 init-title:
#17 16.28 [echo] ----------=========== bio-formats_plugins ===========----------
#17 16.28
#17 16.28 init-timestamp:
#17 16.28
#17 16.28 init:
#17 16.28
#17 16.28 copy-resources:
#17 16.28 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.28 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.28
#17 16.28 compile:
#17 16.54 [resolver:resolve] Resolving artifacts
#17 16.56 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.77 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 16.77 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 16.77 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 18.37 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 18.37 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 18.37 [javac] ^
#17 18.47 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 18.47 [javac] URL url = new URL(urlPath);
#17 18.47 [javac] ^
#17 18.57 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.57 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 18.57 [javac] ^
#17 18.57 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.57 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 18.57 [javac] ^
#17 18.67 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.67 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 18.67 [javac] ^
#17 18.67 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.67 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 18.67 [javac] ^
#17 18.97 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 18.97 [javac] url = new URL(path);
#17 18.97 [javac] ^
#17 19.17 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 19.17 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.17 [javac] 8 warnings
#17 19.22
#17 19.22 bio-formats-plugins.jar:
#17 19.22 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 19.25 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 19.26 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 19.26 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 19.26 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 19.26 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 19.26
#17 19.26 deps-bio-formats-tools:
#17 19.26
#17 19.26 jar-bio-formats-tools:
#17 19.35 [echo] isSnapshot = true
#17 19.51
#17 19.51 init-title:
#17 19.51 [echo] ----------=========== bio-formats-tools ===========----------
#17 19.51
#17 19.51 init-timestamp:
#17 19.51
#17 19.51 init:
#17 19.51
#17 19.51 copy-resources:
#17 19.51 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 19.51
#17 19.51 compile:
#17 19.76 [resolver:resolve] Resolving artifacts
#17 19.77 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 19.98 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 19.98 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 19.98 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 21.23 [javac] 1 warning
#17 21.23
#17 21.23 bio-formats-tools.jar:
#17 21.23 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 21.24 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 21.25 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 21.25 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 21.25 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 21.25 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 21.25
#17 21.25 deps-tests:
#17 21.25
#17 21.25 jar-tests:
#17 21.35 [echo] isSnapshot = true
#17 21.48
#17 21.48 init-title:
#17 21.48 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 21.48
#17 21.48 init-timestamp:
#17 21.48
#17 21.48 init:
#17 21.48
#17 21.48 copy-resources:
#17 21.48 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 21.48
#17 21.48 compile:
#17 21.89 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.18 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.56 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.59 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.85 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.25 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 23.26 [resolver:resolve] Resolving artifacts
#17 23.28 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.35 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.69 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.70 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 23.97 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.33 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 24.33 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 24.54 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 24.54 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 24.54 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 25.64 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 25.64 [javac] int index = unflattenedReader.getCoreIndex();
#17 25.64 [javac] ^
#17 25.64 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 25.64 [javac] reader.setCoreIndex(index);
#17 25.64 [javac] ^
#17 25.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 25.94 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 25.94 [javac] ^
#17 25.94 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 25.94 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 25.94 [javac] ^
#17 26.24 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 26.24 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 26.24 [javac] ^
#17 26.24 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 26.24 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 26.24 [javac] ^
#17 26.30 [javac] Note: Some input files use unchecked or unsafe operations.
#17 26.30 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 26.30 [javac] 7 warnings
#17 26.30
#17 26.30 tests.jar:
#17 26.30 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 26.31 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 26.32 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 26.32 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 26.32 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 26.32 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 26.32
#17 26.32 jars:
#17 26.32
#17 26.32 copy-jars:
#17 26.32
#17 26.32 deps-formats-api:
#17 26.37 [echo] isSnapshot = true
#17 26.42
#17 26.42 install-pom:
#17 26.54 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/pom-bio-formats-8.6.0-SNAPSHOT.pom
#17 26.54 [resolver:install] Installing ome:pom-bio-formats:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 26.55 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 26.55
#17 26.55 jar-formats-api:
#17 26.64 [echo] isSnapshot = true
#17 26.77
#17 26.77 init-title:
#17 26.78 [echo] ----------=========== formats-api ===========----------
#17 26.78
#17 26.78 init-timestamp:
#17 26.78
#17 26.78 init:
#17 26.78
#17 26.78 copy-resources:
#17 26.78
#17 26.78 compile:
#17 26.90 [resolver:resolve] Resolving artifacts
#17 26.90
#17 26.90 formats-api.jar:
#17 26.92 [resolver:install] Using default POM (ome:formats-api:8.6.0-SNAPSHOT)
#17 26.93 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.pom
#17 26.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar
#17 26.93 [resolver:install] Installing ome:formats-api:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 26.93 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 26.93
#17 26.93 deps-turbojpeg:
#17 26.93
#17 26.93 jar-turbojpeg:
#17 27.03 [echo] isSnapshot = true
#17 27.19
#17 27.19 init-title:
#17 27.19 [echo] ----------=========== turbojpeg ===========----------
#17 27.19
#17 27.19 init-timestamp:
#17 27.19
#17 27.19 init:
#17 27.19
#17 27.19 copy-resources:
#17 27.20
#17 27.20 compile:
#17 27.20 [resolver:resolve] Resolving artifacts
#17 27.21
#17 27.21 jar:
#17 27.21 [resolver:install] Using default POM (ome:turbojpeg:8.6.0-SNAPSHOT)
#17 27.22 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.pom
#17 27.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar
#17 27.22 [resolver:install] Installing ome:turbojpeg:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.22 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 27.23
#17 27.23 deps-formats-bsd:
#17 27.23
#17 27.23 jar-formats-bsd:
#17 27.31 [echo] isSnapshot = true
#17 27.44
#17 27.44 init-title:
#17 27.44 [echo] ----------=========== formats-bsd ===========----------
#17 27.44
#17 27.44 init-timestamp:
#17 27.44
#17 27.44 init:
#17 27.44
#17 27.44 copy-resources:
#17 27.44
#17 27.44 compile:
#17 27.63 [resolver:resolve] Resolving artifacts
#17 27.65
#17 27.65 formats-bsd.jar:
#17 27.68 [resolver:install] Using default POM (ome:formats-bsd:8.6.0-SNAPSHOT)
#17 27.68 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.pom
#17 27.68 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar
#17 27.68 [resolver:install] Installing ome:formats-bsd:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 27.68 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 27.68
#17 27.68 deps-formats-gpl:
#17 27.68
#17 27.68 jar-formats-gpl:
#17 27.78 [echo] isSnapshot = true
#17 27.91
#17 27.91 init-title:
#17 27.91 [echo] ----------=========== formats-gpl ===========----------
#17 27.91
#17 27.91 init-timestamp:
#17 27.91
#17 27.91 init:
#17 27.91
#17 27.91 copy-resources:
#17 27.91
#17 27.91 compile:
#17 28.15 [resolver:resolve] Resolving artifacts
#17 28.17
#17 28.17 formats-gpl.jar:
#17 28.22 [resolver:install] Using default POM (ome:formats-gpl:8.6.0-SNAPSHOT)
#17 28.22 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.pom
#17 28.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar
#17 28.22 [resolver:install] Installing ome:formats-gpl:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.22 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 28.22
#17 28.22 deps-bio-formats-plugins:
#17 28.22
#17 28.22 jar-bio-formats-plugins:
#17 28.31 [echo] isSnapshot = true
#17 28.45
#17 28.45 init-title:
#17 28.45 [echo] ----------=========== bio-formats_plugins ===========----------
#17 28.45
#17 28.45 init-timestamp:
#17 28.45
#17 28.45 init:
#17 28.45
#17 28.45 copy-resources:
#17 28.45
#17 28.45 compile:
#17 28.72 [resolver:resolve] Resolving artifacts
#17 28.74
#17 28.74 bio-formats-plugins.jar:
#17 28.75 [resolver:install] Using default POM (ome:bio-formats_plugins:8.6.0-SNAPSHOT)
#17 28.75 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.pom
#17 28.76 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar
#17 28.76 [resolver:install] Installing ome:bio-formats_plugins:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 28.76 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 28.76
#17 28.76 deps-bio-formats-tools:
#17 28.76
#17 28.76 jar-bio-formats-tools:
#17 28.85 [echo] isSnapshot = true
#17 28.99
#17 28.99 init-title:
#17 28.99 [echo] ----------=========== bio-formats-tools ===========----------
#17 28.99
#17 28.99 init-timestamp:
#17 28.99
#17 28.99 init:
#17 28.99
#17 28.99 copy-resources:
#17 28.99
#17 28.99 compile:
#17 29.25 [resolver:resolve] Resolving artifacts
#17 29.26
#17 29.26 bio-formats-tools.jar:
#17 29.27 [resolver:install] Using default POM (ome:bio-formats-tools:8.6.0-SNAPSHOT)
#17 29.27 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.pom
#17 29.27 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar
#17 29.27 [resolver:install] Installing ome:bio-formats-tools:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.27 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 29.27
#17 29.27 deps-tests:
#17 29.27
#17 29.27 jar-tests:
#17 29.37 [echo] isSnapshot = true
#17 29.50
#17 29.50 init-title:
#17 29.50 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 29.50
#17 29.50 init-timestamp:
#17 29.50
#17 29.50 init:
#17 29.50
#17 29.50 copy-resources:
#17 29.50
#17 29.50 compile:
#17 29.77 [resolver:resolve] Resolving artifacts
#17 29.78
#17 29.78 tests.jar:
#17 29.79 [resolver:install] Using default POM (ome:test-suite:8.6.0-SNAPSHOT)
#17 29.79 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.pom
#17 29.79 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/test-suite-8.6.0-SNAPSHOT.jar
#17 29.79 [resolver:install] Installing ome:test-suite:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 29.80 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 29.80
#17 29.80 jars:
#17 29.80
#17 29.80 tools:
#17 29.80 [echo] ----------=========== bioformats_package ===========----------
#17 29.89 [echo] isSnapshot = true
#17 30.04
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#17 30.04 bundle:
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#17 30.28 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.6.0-SNAPSHOT/bio-formats_plugins-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.31 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.1-SNAPSHOT/ome-common-6.3.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.33 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.22.0/jackson-databind-2.22.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.57 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.22/jackson-annotations-2.22.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.59 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.22.0/jackson-core-2.22.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.66 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.72 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.73 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.74 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.74 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.91 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.41 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.41 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.42 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.43 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.51 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.51 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.52 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.1-SNAPSHOT/ome-xml-6.6.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.1-SNAPSHOT/specification-6.6.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.63 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.6.0-SNAPSHOT/formats-api-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.65 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.1-SNAPSHOT/ome-codecs-1.2.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.66 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.2.1-SNAPSHOT/ome-jai-0.2.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.79 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.82 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.6.0-SNAPSHOT/formats-bsd-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.90 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.6.0-SNAPSHOT/turbojpeg-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.94 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.94 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.04 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.06 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.49 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.52 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.55 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.66 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.67 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.69 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.70 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.92 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.99 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.05 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.6.0-SNAPSHOT/formats-gpl-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.15 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.1-SNAPSHOT/ome-mdbtools-5.4.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.16 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.4.1-SNAPSHOT/metakit-5.4.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.16 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.1-SNAPSHOT/ome-poi-5.4.1-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.29 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.30 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.10.0/cdm-core-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.76 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 33.88 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.27 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.28 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.62 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.64 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.66 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.6.0-SNAPSHOT/bio-formats-tools-8.6.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.66 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.69 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.08 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.19 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.58 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.62 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 43.37 [resolver:install] Using default POM (ome:bioformats_package:8.6.0-SNAPSHOT)
#17 43.37 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.pom
#17 43.37 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/bioformats_package-8.6.0-SNAPSHOT.jar
#17 43.42 [resolver:install] Installing ome:bioformats_package:8.6.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.6.0-SNAPSHOT/maven-metadata-local.xml
#17 43.42 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 43.43
#17 43.43 BUILD SUCCESSFUL
#17 43.43 Total time: 43 seconds
#17 DONE 44.1s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.1s
#19 exporting to image
#19 exporting layers
#19 exporting layers 4.4s done
#19 writing image sha256:e8dd0c7031cc774309a67a92633cae0129ff36b4c55c846d429f23b2b85886d4 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 4.4s
WARNING: current commit information was not captured by the build: failed to read current commit information with git rev-parse --is-inside-work-tree
Finished: SUCCESS
