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#14 415.3 Downloaded from central: https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.1.2/logback-classic-1.1.2.jar (271 kB at 873 kB/s)
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#14 417.2 Progress (4): 175 kB | 0.4/1.8 MB | 246/350 kB | 153 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar
#14 417.2 Progress (4): 175 kB | 0.4/1.8 MB | 250/350 kB | 153 kB
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#14 417.2 Progress (2): 0.6/1.8 MB | 350 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-profile/2.0.7/maven-profile-2.0.7.jar
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#14 417.2 Progress (3): 0.9/1.8 MB | 21 kB | 9.9 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/2.0.7/maven-model-2.0.7.jar
#14 417.2 Progress (3): 0.9/1.8 MB | 21 kB | 9.9 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.7/maven-reporting-api-2.0.7.jar (9.9 kB at 148 kB/s)
#14 417.2 Progress (3): 1.1/1.8 MB | 21 kB | 35 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.7/maven-plugin-parameter-documenter-2.0.7.jar (21 kB at 310 kB/s)
#14 417.2 Progress (2): 1.1/1.8 MB | 35 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/2.0.7/maven-artifact-2.0.7.jar
#14 417.2 Progress (2): 1.1/1.8 MB | 35 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-repository-metadata/2.0.7/maven-repository-metadata-2.0.7.jar
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#14 417.2 Progress (2): 1.3/1.8 MB | 86 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-error-diagnostics/2.0.7/maven-error-diagnostics-2.0.7.jar
#14 417.2 Progress (2): 1.3/1.8 MB | 86 kB
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#14 417.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-project/2.0.7/maven-project-2.0.7.jar
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#14 417.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-registry/2.0.7/maven-plugin-registry-2.0.7.jar
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#14 417.2 Progress (2): 1.8/1.8 MB | 14 kB
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#14 417.2 Progress (2): 1.8/1.8 MB | 14 kB
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#14 417.2 Progress (2): 1.8 MB | 102/117 kB
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#14 417.2 Progress (3): 117 kB | 29 kB | 20/30 kB
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#14 417.2 Progress (3): 117 kB | 29 kB | 25/30 kB
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#14 417.2 Progress (3): 29 kB | 30 kB | 4.1/13 kB
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#14 417.2 Progress (3): 29 kB | 30 kB | 8.2/13 kB
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#14 417.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-monitor/2.0.7/maven-monitor-2.0.7.jar
#14 417.2 Progress (3): 30 kB | 13 kB | 4.1/37 kB
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#14 417.2 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-archiver/2.5/maven-archiver-2.5.jar
#14 417.2 Progress (2): 13 kB | 12/37 kB
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#14 417.2 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-archiver/2.1/plexus-archiver-2.1.jar
#14 417.2 Progress (2): 37 kB | 4.1/57 kB
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#14 417.3 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-io/2.0.2/plexus-io-2.0.2.jar
#14 417.3 Progress (3): 57 kB | 10 kB | 20/22 kB
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#14 417.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-dependency-tree/2.1/maven-dependency-tree-2.1.jar
#14 417.3 Progress (3): 10 kB | 22 kB | 70/184 kB
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#14 417.3 Progress (2): 22 kB | 82/184 kB
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#14 417.3 Progress (2): 22 kB | 86/184 kB
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#14 417.3 Progress (2): 184/184 kB | 4.1/58 kB
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#14 417.3 Progress (3): 58 kB | 60 kB | 52/231 kB
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#14 417.3 Progress (2): 60 kB | 84/231 kB
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#14 417.3 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/3.0.10/plexus-utils-3.0.10.jar (231 kB at 1.3 MB/s)
#14 417.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.pom
#14 417.4 Progress (1): 4.1 kB
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#14 417.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-providers/3.5.2/wagon-providers-3.5.2.pom
#14 417.5 Progress (1): 3.0 kB
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#14 417.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon/3.5.2/wagon-3.5.2.pom
#14 417.5 Progress (1): 4.1/21 kB
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#14 417.5 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.pom
#14 417.5 Progress (1): 2.0 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-common/3.5.2/wagon-ssh-common-3.5.2.pom (2.0 kB at 81 kB/s)
#14 417.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity-api/1.1/plexus-interactivity-api-1.1.pom
#14 417.6 Progress (1): 823 B
Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity-api/1.1/plexus-interactivity-api-1.1.pom (823 B at 34 kB/s)
#14 417.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity/1.1/plexus-interactivity-1.1.pom
#14 417.6 Progress (1): 1.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interactivity/1.1/plexus-interactivity-1.1.pom (1.7 kB at 42 kB/s)
#14 417.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-components/6.5/plexus-components-6.5.pom
#14 417.6 Progress (1): 2.7 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-components/6.5/plexus-components-6.5.pom (2.7 kB at 104 kB/s)
#14 417.6 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus/6.5/plexus-6.5.pom
#14 417.7 Progress (1): 4.1/26 kB
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#14 417.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-provider-api/3.5.2/wagon-provider-api-3.5.2.pom
#14 417.7 Progress (1): 1.9 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-provider-api/3.5.2/wagon-provider-api-3.5.2.pom (1.9 kB at 42 kB/s)
#14 417.7 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/wagon/wagon-ssh-external/3.5.2/wagon-ssh-external-3.5.2.jar
#14 417.7 Downloading from centr
#14 417.7 [output clipped, log limit 2MiB reached]
#14 515.0 SLF4J: No SLF4J providers were found.
#14 515.0 SLF4J: Defaulting to no-operation (NOP) logger implementation
#14 515.0 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#14 DONE 525.4s
#15 [11/13] WORKDIR /bio-formats-build/bioformats
#15 DONE 0.0s
#16 [12/13] RUN ant jars tools
#16 0.529 Buildfile: /bio-formats-build/bioformats/build.xml
#16 0.995 [echo] isSnapshot = true
#16 3.099
#16 3.099 copy-jars:
#16 3.099
#16 3.099 deps-formats-api:
#16 3.181 [echo] isSnapshot = true
#16 3.240
#16 3.240 install-pom:
#16 3.444 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 3.450 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 3.455 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 3.456
#16 3.456 jar-formats-api:
#16 3.569 [echo] isSnapshot = true
#16 3.760
#16 3.760 init-title:
#16 3.760 [echo] ----------=========== formats-api ===========----------
#16 3.760
#16 3.760 init-timestamp:
#16 3.765
#16 3.765 init:
#16 3.765
#16 3.765 copy-resources:
#16 3.766 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.781 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 3.784
#16 3.784 compile:
#16 4.000 [resolver:resolve] Resolving artifacts
#16 4.033 [javac] Compiling 53 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#16 4.706 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 4.706 [javac] import loci.common.ReflectedUniverse;
#16 4.706 [javac] ^
#16 4.807 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 4.807 [javac] int currentIndex = r.getCoreIndex();
#16 4.807 [javac] ^
#16 4.807 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.807 [javac] r.setCoreIndex(coreIndex);
#16 4.807 [javac] ^
#16 4.907 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 4.908 [javac] r.setCoreIndex(currentIndex);
#16 4.908 [javac] ^
#16 5.008 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.008 [javac] public void setCoreIndex(int no) {
#16 5.008 [javac] ^
#16 5.008 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.008 [javac] public int getCoreIndex() {
#16 5.008 [javac] ^
#16 5.008 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.008 [javac] public int coreIndexToSeries(int index)
#16 5.008 [javac] ^
#16 5.009 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.009 [javac] public int seriesToCoreIndex(int series)
#16 5.009 [javac] ^
#16 5.009 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.009 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.009 [javac] ^
#16 5.009 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.009 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#16 5.009 [javac] ^
#16 5.009 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.009 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#16 5.010 [javac] ^
#16 5.010 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.010 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 5.010 [javac] ^
#16 5.010 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.010 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#16 5.010 [javac] ^
#16 5.110 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.111 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.111 [javac] ^
#16 5.111 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 5.111 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 5.111 [javac] ^
#16 5.211 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.212 [javac] public void setCoreIndex(int no) {
#16 5.212 [javac] ^
#16 5.212 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.212 [javac] public int getCoreIndex() {
#16 5.212 [javac] ^
#16 5.212 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.212 [javac] public int coreIndexToSeries(int index) {
#16 5.212 [javac] ^
#16 5.213 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.213 [javac] public int seriesToCoreIndex(int series) {
#16 5.213 [javac] ^
#16 5.213 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.213 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.213 [javac] ^
#16 5.213 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:589: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.213 [javac] return getReader().getCoreMetadataList();
#16 5.213 [javac] ^
#16 5.213 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:769: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.213 [javac] return getReader().getCoreIndex();
#16 5.214 [javac] ^
#16 5.214 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:775: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.214 [javac] getReader().setCoreIndex(no);
#16 5.214 [javac] ^
#16 5.214 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:780: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.214 [javac] return getReader().seriesToCoreIndex(series);
#16 5.214 [javac] ^
#16 5.214 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.214 [javac] return getReader().coreIndexToSeries(index);
#16 5.214 [javac] ^
#16 5.315 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.315 [javac] public void setCoreIndex(int no) {
#16 5.315 [javac] ^
#16 5.315 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.315 [javac] public int getCoreIndex() {
#16 5.315 [javac] ^
#16 5.315 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.315 [javac] public int coreIndexToSeries(int index) {
#16 5.315 [javac] ^
#16 5.315 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.315 [javac] public int seriesToCoreIndex(int series) {
#16 5.315 [javac] ^
#16 5.315 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.315 [javac] public List<CoreMetadata> getCoreMetadataList() {
#16 5.316 [javac] ^
#16 5.316 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 5.316 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 5.316 [javac] ^
#16 5.316 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 5.316 [javac] return reader.getCoreIndex();
#16 5.316 [javac] ^
#16 5.316 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 5.316 [javac] reader.setCoreIndex(no);
#16 5.316 [javac] ^
#16 5.316 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 5.316 [javac] return reader.seriesToCoreIndex(series);
#16 5.316 [javac] ^
#16 5.316 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 5.316 [javac] return reader.coreIndexToSeries(index);
#16 5.316 [javac] ^
#16 5.503 [javac] Note: Some input files use unchecked or unsafe operations.
#16 5.503 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 5.503 [javac] 35 warnings
#16 5.504
#16 5.504 formats-api.jar:
#16 5.504 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#16 5.531 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#16 5.568 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 5.574 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 5.578 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 5.580 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 5.584 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 5.585
#16 5.585 deps-turbojpeg:
#16 5.585
#16 5.585 jar-turbojpeg:
#16 5.714 [echo] isSnapshot = true
#16 5.893
#16 5.893 init-title:
#16 5.893 [echo] ----------=========== turbojpeg ===========----------
#16 5.893
#16 5.893 init-timestamp:
#16 5.893
#16 5.893 init:
#16 5.893
#16 5.893 copy-resources:
#16 5.894 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 5.895
#16 5.895 compile:
#16 5.906 [resolver:resolve] Resolving artifacts
#16 5.913 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#16 6.622
#16 6.622 jar:
#16 6.627 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#16 6.814 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 6.822 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 6.827 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 6.829 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 6.833 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 6.834
#16 6.834 deps-formats-bsd:
#16 6.834
#16 6.834 jar-formats-bsd:
#16 6.950 [echo] isSnapshot = true
#16 7.128
#16 7.128 init-title:
#16 7.128 [echo] ----------=========== formats-bsd ===========----------
#16 7.128
#16 7.128 init-timestamp:
#16 7.129
#16 7.129 init:
#16 7.129
#16 7.129 copy-resources:
#16 7.129 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.132 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 7.133
#16 7.133 compile:
#16 7.362 [resolver:resolve] Resolving artifacts
#16 7.393 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#16 8.406 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 8.406 [javac] import loci.common.ReflectedUniverse;
#16 8.406 [javac] ^
#16 8.807 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.807 [javac] core.size() != reader.getCoreMetadataList().size())
#16 8.807 [javac] ^
#16 8.807 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.807 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#16 8.807 [javac] ^
#16 8.807 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.807 [javac] int n = reader.getCoreMetadataList().size();
#16 8.807 [javac] ^
#16 8.807 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.807 [javac] reader.setCoreIndex(coreIndex);
#16 8.807 [javac] ^
#16 8.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.808 [javac] int n = reader.getCoreMetadataList().size();
#16 8.808 [javac] ^
#16 8.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.808 [javac] int n = reader.getCoreMetadataList().size();
#16 8.808 [javac] ^
#16 8.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#16 8.808 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#16 8.808 [javac] ^
#16 8.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.808 [javac] int n = reader.getCoreMetadataList().size();
#16 8.808 [javac] ^
#16 8.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#16 8.808 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#16 8.808 [javac] ^
#16 8.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.808 [javac] int n = reader.getCoreMetadataList().size();
#16 8.808 [javac] ^
#16 8.808 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 8.809 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#16 8.809 [javac] ^
#16 8.809 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.809 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.809 [javac] ^
#16 8.809 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 8.809 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#16 8.809 [javac] ^
#16 8.809 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.809 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#16 8.809 [javac] ^
#16 8.809 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.809 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#16 8.809 [javac] ^
#16 8.809 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.809 [javac] seriesCount = reader.getCoreMetadataList().size();
#16 8.809 [javac] ^
#16 8.810 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.810 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#16 8.810 [javac] ^
#16 8.810 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.810 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#16 8.810 [javac] ^
#16 8.810 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.810 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#16 8.810 [javac] ^
#16 8.910 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 8.910 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#16 8.910 [javac] ^
#16 9.011 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.011 [javac] BitWriter out = new BitWriter();
#16 9.011 [javac] ^
#16 9.011 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 9.011 [javac] BitWriter out = new BitWriter();
#16 9.011 [javac] ^
#16 9.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:618: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 9.912 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#16 9.912 [javac] ^
#16 10.01 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#16 10.01 [javac] StreamTokenizer st = new StreamTokenizer(in);
#16 10.01 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 10.11 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.11 [javac] protected ReflectedUniverse r;
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 10.11 [javac] r = new ReflectedUniverse();
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:948: warning: [deprecation] NM in UNITS has been deprecated
#16 10.11 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:980: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] sliceThickness.value = padString(String.valueOf(physicalZ.value(UNITS.MM)));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:993: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] String px = physicalX == null ? "1" : String.valueOf(physicalX.value(UNITS.MM));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:994: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] String py = physicalY == null ? "1" : String.valueOf(physicalY.value(UNITS.MM));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1013: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1017: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1023: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1071: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] offsetX.value = padString(physicalX == null ? "0" : padString(String.valueOf(physicalX.value(UNITS.MM).floatValue() * width)));
#16 10.11 [javac] ^
#16 10.11 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#16 10.11 [javac] offsetY.value = padString(physicalY == null ? "0" : padString(String.valueOf(physicalY.value(UNITS.MM).floatValue() * height)));
#16 10.11 [javac] ^
#16 10.31 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#16 10.31 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#16 10.31 [javac] ^
#16 10.31 [javac] Note: Some input files use unchecked or unsafe operations.
#16 10.31 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 10.31 [javac] 38 warnings
#16 10.31
#16 10.31 formats-bsd.jar:
#16 10.32 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#16 10.44 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 10.44 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 10.45 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 10.45 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 10.45 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 10.45
#16 10.45 deps-formats-gpl:
#16 10.45
#16 10.45 jar-formats-gpl:
#16 10.55 [echo] isSnapshot = true
#16 10.74
#16 10.74 init-title:
#16 10.74 [echo] ----------=========== formats-gpl ===========----------
#16 10.74
#16 10.74 init-timestamp:
#16 10.74
#16 10.74 init:
#16 10.74
#16 10.74 copy-resources:
#16 10.74 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.74 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 10.74
#16 10.74 compile:
#16 11.20 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.47 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 11.52 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom
#16 12.10 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.10 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.12 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.14 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom
#16 12.27 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.pom (0 B at 0.0 KB/sec)
#16 12.34 [resolver:resolve] Resolving artifacts
#16 12.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.39 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.39 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.42 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar
#16 12.42 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar
#16 12.83 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.83 [resolver:resolve] Downloaded https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar (0 B at 0.0 KB/sec)
#16 12.86 [javac] Compiling 173 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#16 14.07 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.07 [javac] import loci.formats.codec.BitWriter;
#16 14.07 [javac] ^
#16 14.07 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 14.07 [javac] import loci.formats.codec.BitWriter;
#16 14.07 [javac] ^
#16 15.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#16 15.77 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#16 15.77 [javac] ^
#16 15.77 [javac] cast to Object for a varargs call
#16 15.77 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#16 15.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:398: warning: [deprecation] NM in UNITS has been deprecated
#16 15.77 [javac] final Length offsetX = new Length(i.vOffsetX, UNITS.NM);
#16 15.77 [javac] ^
#16 15.77 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaSCNReader.java:399: warning: [deprecation] NM in UNITS has been deprecated
#16 15.77 [javac] final Length offsetY = new Length(i.vOffsetY, UNITS.NM);
#16 15.77 [javac] ^
#16 15.87 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1257: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.87 [javac] BitWriter bits = null;
#16 15.87 [javac] ^
#16 15.87 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1259: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 15.87 [javac] bits = new BitWriter(planes[index].length / 8);
#16 15.87 [javac] ^
#16 15.97 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:692: warning: [deprecation] MM in UNITS has been deprecated
#16 15.97 [javac] Length yPos = FormatTools.getStagePosition(physicalDistanceFromTopEdge, UNITS.MM);
#16 15.97 [javac] ^
#16 15.97 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/SVSReader.java:698: warning: [deprecation] MM in UNITS has been deprecated
#16 15.97 [javac] Length xPos = FormatTools.getStagePosition(physicalDistanceFromLeftEdge, UNITS.MM);
#16 15.97 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#16 16.17 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:298: warning: [deprecation] NM in UNITS has been deprecated
#16 16.17 [javac] int actualWidth = (int) (stitchedWidth / physicalSizeX.value(UNITS.NM).doubleValue());
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:299: warning: [deprecation] NM in UNITS has been deprecated
#16 16.17 [javac] int actualHeight = (int) (stitchedHeight / physicalSizeY.value(UNITS.NM).doubleValue());
#16 16.17 [javac] ^
#16 16.17 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OperettaReader.java:1202: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#16 16.17 [javac] protected AcquisitionMode getAcquisitionMode(String mode) throws FormatException {
#16 16.17 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.47 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.47 [javac] ^
#16 16.47 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#16 16.47 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#16 16.47 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:199: warning: [deprecation] getAttributes() in Variable has been deprecated
#16 16.74 [javac] List<Attribute> attributes = variable.getAttributes();
#16 16.74 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:201: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.74 [javac] toReturn.put(attribute.getName(), arrayToString(attribute.getValues()));
#16 16.74 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:237: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.74 [javac] String groupName = group.getName();
#16 16.74 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getAttributes() in Group has been deprecated
#16 16.74 [javac] List<Attribute> attributes = group.getAttributes();
#16 16.74 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:240: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.74 [javac] String attributeName = attribute.getName();
#16 16.74 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:246: warning: [deprecation] getName() in CDMNode has been deprecated
#16 16.74 [javac] String variableName = variable.getName();
#16 16.74 [javac] ^
#16 16.74 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:310: warning: [deprecation] open(String) in NetcdfFile has been deprecated
#16 16.74 [javac] netCDFFile = NetcdfFile.open(currentId);
#16 16.74 [javac] ^
#16 16.74 [javac] Note: Some input files use unchecked or unsafe operations.
#16 16.74 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 16.74 [javac] 22 warnings
#16 16.74
#16 16.74 formats-gpl.jar:
#16 16.75 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#16 16.89 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 16.90 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 16.93 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 16.93 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 16.93 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 16.93
#16 16.93 deps-bio-formats-plugins:
#16 16.93
#16 16.93 jar-bio-formats-plugins:
#16 17.04 [echo] isSnapshot = true
#16 17.21
#16 17.21 init-title:
#16 17.21 [echo] ----------=========== bio-formats_plugins ===========----------
#16 17.21
#16 17.21 init-timestamp:
#16 17.21
#16 17.21 init:
#16 17.21
#16 17.21 copy-resources:
#16 17.21 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.22 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 17.22
#16 17.22 compile:
#16 17.47 [resolver:resolve] Resolving artifacts
#16 17.48 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#16 18.29 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.29 [javac] import loci.common.ReflectedUniverse;
#16 18.29 [javac] ^
#16 18.29 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.29 [javac] import loci.common.ReflectedUniverse;
#16 18.29 [javac] ^
#16 18.79 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#16 18.79 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#16 18.79 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.89 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.89 [javac] ^
#16 18.89 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.89 [javac] ReflectedUniverse r = new ReflectedUniverse();
#16 18.89 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.99 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.99 [javac] ^
#16 18.99 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:168: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#16 18.99 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#16 18.99 [javac] ^
#16 19.29 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#16 19.29 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 19.29 [javac] 7 warnings
#16 19.29
#16 19.29 bio-formats-plugins.jar:
#16 19.29 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#16 19.32 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 19.33 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 19.33 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 19.33 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 19.33 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 19.33
#16 19.33 deps-bio-formats-tools:
#16 19.33
#16 19.33 jar-bio-formats-tools:
#16 19.44 [echo] isSnapshot = true
#16 19.61
#16 19.61 init-title:
#16 19.61 [echo] ----------=========== bio-formats-tools ===========----------
#16 19.61
#16 19.61 init-timestamp:
#16 19.61
#16 19.61 init:
#16 19.61
#16 19.61 copy-resources:
#16 19.61 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 19.61
#16 19.61 compile:
#16 19.86 [resolver:resolve] Resolving artifacts
#16 19.87 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#16 20.94
#16 20.94 bio-formats-tools.jar:
#16 20.95 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#16 20.95 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 20.96 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 20.96 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 20.96 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 20.96 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 20.96
#16 20.96 deps-tests:
#16 20.96
#16 20.96 jar-tests:
#16 21.06 [echo] isSnapshot = true
#16 21.23
#16 21.23 init-title:
#16 21.23 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 21.23
#16 21.23 init-timestamp:
#16 21.23
#16 21.23 init:
#16 21.23
#16 21.23 copy-resources:
#16 21.23 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#16 21.23
#16 21.23 compile:
#16 21.54 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.62 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 21.64 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.06 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom
#16 22.49 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15.pom (0 B at 0.0 KB/sec)
#16 22.51 [resolver:resolve] Resolving artifacts
#16 22.52 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.56 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.58 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/content/repositories/unidata-releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 22.99 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar
#16 23.37 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.15/file-leak-detector-1.15-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#16 23.37 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#16 24.29 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:605: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.29 [javac] int index = unflattenedReader.getCoreIndex();
#16 24.29 [javac] ^
#16 24.29 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:606: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#16 24.29 [javac] reader.setCoreIndex(index);
#16 24.29 [javac] ^
#16 24.49 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2247: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.49 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.49 [javac] ^
#16 24.49 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2413: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#16 24.49 [javac] config.setSeries(resolutionReader.getCoreIndex());
#16 24.49 [javac] ^
#16 24.79 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.79 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#16 24.79 [javac] ^
#16 24.79 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#16 24.79 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#16 24.79 [javac] ^
#16 24.79 [javac] Note: Some input files use unchecked or unsafe operations.
#16 24.79 [javac] Note: Recompile with -Xlint:unchecked for details.
#16 24.79 [javac] 6 warnings
#16 24.81
#16 24.81 tests.jar:
#16 24.82 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#16 24.83 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 24.84 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 24.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 24.84 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 24.84 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 24.85
#16 24.85 jars:
#16 24.85
#16 24.85 copy-jars:
#16 24.85
#16 24.85 deps-formats-api:
#16 24.90 [echo] isSnapshot = true
#16 24.95
#16 24.95 install-pom:
#16 25.15 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/pom-bio-formats-8.0.0-SNAPSHOT.pom
#16 25.16 [resolver:install] Installing ome:pom-bio-formats:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.16 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#16 25.16
#16 25.16 jar-formats-api:
#16 25.25 [echo] isSnapshot = true
#16 25.42
#16 25.42 init-title:
#16 25.42 [echo] ----------=========== formats-api ===========----------
#16 25.42
#16 25.42 init-timestamp:
#16 25.42
#16 25.42 init:
#16 25.42
#16 25.42 copy-resources:
#16 25.42
#16 25.42 compile:
#16 25.56 [resolver:resolve] Resolving artifacts
#16 25.57
#16 25.57 formats-api.jar:
#16 25.59 [resolver:install] Using default POM (ome:formats-api:8.0.0-SNAPSHOT)
#16 25.59 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.pom
#16 25.60 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar
#16 25.60 [resolver:install] Installing ome:formats-api:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 25.60 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#16 25.60
#16 25.60 deps-turbojpeg:
#16 25.60
#16 25.60 jar-turbojpeg:
#16 25.81 [echo] isSnapshot = true
#16 25.97
#16 25.97 init-title:
#16 25.97 [echo] ----------=========== turbojpeg ===========----------
#16 25.97
#16 25.97 init-timestamp:
#16 25.97
#16 25.97 init:
#16 25.97
#16 25.97 copy-resources:
#16 25.97
#16 25.97 compile:
#16 25.98 [resolver:resolve] Resolving artifacts
#16 25.98
#16 25.98 jar:
#16 25.99 [resolver:install] Using default POM (ome:turbojpeg:8.0.0-SNAPSHOT)
#16 26.00 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.pom
#16 26.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar
#16 26.00 [resolver:install] Installing ome:turbojpeg:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.01 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#16 26.01
#16 26.01 deps-formats-bsd:
#16 26.01
#16 26.01 jar-formats-bsd:
#16 26.09 [echo] isSnapshot = true
#16 26.26
#16 26.26 init-title:
#16 26.26 [echo] ----------=========== formats-bsd ===========----------
#16 26.26
#16 26.26 init-timestamp:
#16 26.26
#16 26.26 init:
#16 26.26
#16 26.26 copy-resources:
#16 26.26
#16 26.26 compile:
#16 26.45 [resolver:resolve] Resolving artifacts
#16 26.47
#16 26.47 formats-bsd.jar:
#16 26.50 [resolver:install] Using default POM (ome:formats-bsd:8.0.0-SNAPSHOT)
#16 26.51 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.pom
#16 26.51 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar
#16 26.51 [resolver:install] Installing ome:formats-bsd:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 26.51 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#16 26.51
#16 26.51 deps-formats-gpl:
#16 26.51
#16 26.51 jar-formats-gpl:
#16 26.60 [echo] isSnapshot = true
#16 26.77
#16 26.77 init-title:
#16 26.77 [echo] ----------=========== formats-gpl ===========----------
#16 26.77
#16 26.77 init-timestamp:
#16 26.77
#16 26.77 init:
#16 26.77
#16 26.77 copy-resources:
#16 26.77
#16 26.77 compile:
#16 27.00 [resolver:resolve] Resolving artifacts
#16 27.01
#16 27.01 formats-gpl.jar:
#16 27.05 [resolver:install] Using default POM (ome:formats-gpl:8.0.0-SNAPSHOT)
#16 27.05 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.pom
#16 27.06 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar
#16 27.06 [resolver:install] Installing ome:formats-gpl:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.06 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#16 27.06
#16 27.06 deps-bio-formats-plugins:
#16 27.06
#16 27.06 jar-bio-formats-plugins:
#16 27.15 [echo] isSnapshot = true
#16 27.31
#16 27.31 init-title:
#16 27.31 [echo] ----------=========== bio-formats_plugins ===========----------
#16 27.31
#16 27.31 init-timestamp:
#16 27.31
#16 27.31 init:
#16 27.31
#16 27.31 copy-resources:
#16 27.31
#16 27.31 compile:
#16 27.55 [resolver:resolve] Resolving artifacts
#16 27.57
#16 27.57 bio-formats-plugins.jar:
#16 27.58 [resolver:install] Using default POM (ome:bio-formats_plugins:8.0.0-SNAPSHOT)
#16 27.58 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.pom
#16 27.58 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar
#16 27.59 [resolver:install] Installing ome:bio-formats_plugins:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 27.59 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#16 27.59
#16 27.59 deps-bio-formats-tools:
#16 27.59
#16 27.59 jar-bio-formats-tools:
#16 27.68 [echo] isSnapshot = true
#16 27.84
#16 27.84 init-title:
#16 27.84 [echo] ----------=========== bio-formats-tools ===========----------
#16 27.84
#16 27.84 init-timestamp:
#16 27.84
#16 27.84 init:
#16 27.84
#16 27.84 copy-resources:
#16 27.84
#16 27.84 compile:
#16 28.07 [resolver:resolve] Resolving artifacts
#16 28.08
#16 28.08 bio-formats-tools.jar:
#16 28.09 [resolver:install] Using default POM (ome:bio-formats-tools:8.0.0-SNAPSHOT)
#16 28.09 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.pom
#16 28.09 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar
#16 28.09 [resolver:install] Installing ome:bio-formats-tools:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.09 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#16 28.10
#16 28.10 deps-tests:
#16 28.10
#16 28.10 jar-tests:
#16 28.18 [echo] isSnapshot = true
#16 28.35
#16 28.35 init-title:
#16 28.35 [echo] ----------=========== bio-formats-testing-framework ===========----------
#16 28.35
#16 28.35 init-timestamp:
#16 28.35
#16 28.35 init:
#16 28.35
#16 28.35 copy-resources:
#16 28.35
#16 28.35 compile:
#16 28.60 [resolver:resolve] Resolving artifacts
#16 28.61
#16 28.61 tests.jar:
#16 28.62 [resolver:install] Using default POM (ome:test-suite:8.0.0-SNAPSHOT)
#16 28.62 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.pom
#16 28.62 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/test-suite-8.0.0-SNAPSHOT.jar
#16 28.62 [resolver:install] Installing ome:test-suite:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 28.63 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#16 28.63
#16 28.63 jars:
#16 28.63
#16 28.63 tools:
#16 28.63 [echo] ----------=========== bioformats_package ===========----------
#16 28.72 [echo] isSnapshot = true
#16 28.88
#16 28.88 init-timestamp:
#16 28.88
#16 28.88 bundle:
#16 29.20 [resolver:resolve] Resolving artifacts
#16 29.21 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.0.0-SNAPSHOT/bio-formats_plugins-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.0.22-SNAPSHOT/ome-common-6.0.22-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.26 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.29 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.29 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.35 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.37 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.42 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.43 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.66 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.71 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.73 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.79 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.80 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.81 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.81 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.2/joda-time-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 29.99 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.0-jre/guava-32.0.0-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.48 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.49 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.57 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.58 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.3.5-SNAPSHOT/ome-xml-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.64 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.3.5-SNAPSHOT/specification-6.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.69 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.0.0-SNAPSHOT/formats-api-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.71 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.0.2-SNAPSHOT/ome-codecs-1.0.2-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.72 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.3-SNAPSHOT/ome-jai-0.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.86 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.21/aircompressor-0.21.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.88 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.0.0-SNAPSHOT/formats-bsd-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.95 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.0.0-SNAPSHOT/turbojpeg-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 30.99 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.00 [unzip] Expanding: /home/build/.m2/repository/commons-lang/commons-lang/2.6/commons-lang-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.03 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.05 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.49 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.52 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.55 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.7/commons-lang3-3.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.62 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.72 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.74 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.76 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 31.77 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.00 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.07 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.13 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.0.0-SNAPSHOT/formats-gpl-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.22 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.3-SNAPSHOT/ome-mdbtools-5.3.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.7-SNAPSHOT/metakit-5.3.7-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.24 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.9-SNAPSHOT/ome-poi-5.3.9-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.37 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.38 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.3.3/cdm-core-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.82 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.3.3/httpservices-5.3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.83 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.9/httpclient-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 32.94 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.00 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.9/httpmime-4.5.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.01 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.02 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.28.0/sqlite-jdbc-3.28.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.18 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.19 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.20 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.21 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.0.0-SNAPSHOT/bio-formats-tools-8.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.22 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.24 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.64 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 33.75 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 34.07 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#16 39.81 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#16 40.39 [resolver:install] Using default POM (ome:bioformats_package:8.0.0-SNAPSHOT)
#16 40.40 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.pom
#16 40.47 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/bioformats_package-8.0.0-SNAPSHOT.jar
#16 40.51 [resolver:install] Installing ome:bioformats_package:8.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.0.0-SNAPSHOT/maven-metadata-local.xml
#16 40.51 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#16 40.52
#16 40.52 BUILD SUCCESSFUL
#16 40.52 Total time: 39 seconds
#16 DONE 40.7s
#17 [13/13] WORKDIR /bio-formats-build/bioformats/components/test-suite
#17 DONE 0.0s
#18 exporting to image
#18 exporting layers
#18 exporting layers 3.3s done
#18 writing image sha256:d361a2dd536060bbf391a7d2840ec7722318576de58690231e2588204be6e4f7 done
#18 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#18 DONE 3.3s
Finished: SUCCESS
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