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#15 458.4 Progress (4): 2.7/3.0 MB | 1.6/1.6 MB | 862 kB | 16/855 kB
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar
#15 458.4 Progress (4): 2.7/3.0 MB | 1.6/1.6 MB | 862 kB | 16/855 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.16.1/jackson-databind-2.16.1.jar (1.6 MB at 7.7 MB/s)
#15 458.4 Progress (4): 3.0 MB | 862 kB | 598/855 kB | 4.1/237 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/client5/httpclient5/5.3.1/httpclient5-5.3.1.jar (862 kB at 3.8 MB/s)
#15 458.4 Downloaded from central: https://repo.maven.apache.org/maven2/com/google/guava/guava/32.1.0-jre/guava-32.1.0-jre.jar (3.0 MB at 13 MB/s)
#15 458.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5-h2/5.2.4/httpcore5-h2-5.2.4.jar (237 kB at 937 kB/s)
#15 458.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/httpcomponents/core5/httpcore5/5.2.4/httpcore5-5.2.4.jar (855 kB at 3.3 MB/s)
#15 459.1 [[1;34mINFO[m] Building jar: /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.4.0-SNAPSHOT.jar
#15 466.7 [[1;34mINFO[m]
#15 466.7 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbioformats_package[0;1m ---[m
#15 466.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#15 466.7 [[1;34mINFO[m] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/target/bioformats_package-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#15 466.7 [[1;34mINFO[m]
#15 466.7 [[1;34mINFO[m] [1m---------------------------< [0;36mome:test-suite[0;1m >---------------------------[m
#15 466.7 [[1;34mINFO[m] [1mBuilding Bio-Formats testing framework 8.4.0-SNAPSHOT [20/24][m
#15 466.7 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#15 466.7 Downloading from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.pom
#15 466.8 Progress (1): 2.0 kB
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#15 466.8 Downloading from central: https://repo.maven.apache.org/maven2/org/testng/testng/6.5.2/testng-6.5.2.pom
#15 466.8 Progress (1): 4.1 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/testng/testng/6.5.2/testng-6.5.2.pom (7.2 kB at 120 kB/s)
#15 466.9 Downloading from central: https://repo.maven.apache.org/maven2/com/beust/jcommander/1.12/jcommander-1.12.pom
#15 466.9 Progress (1): 4.1 kB
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#15 466.9 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-api/1.6.4/slf4j-api-1.6.4.pom
#15 466.9 Progress (1): 2.7 kB
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#15 467.0 Downloading from central: https://repo.maven.apache.org/maven2/org/slf4j/slf4j-parent/1.6.4/slf4j-parent-1.6.4.pom
#15 467.0 Progress (1): 4.1 kB
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#15 467.0 Downloading from central: https://repo.maven.apache.org/maven2/org/hamcrest/hamcrest-core/1.2.1/hamcrest-core-1.2.1.pom
#15 467.1 Progress (1): 4.1 kB
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#15 467.1 Downloading from central: https://repo.maven.apache.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 467.1 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 467.1 Downloading from imagej.public: https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#15 467.9 Progress (1): 3.2/4.2 kB
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#15 468.0 Downloading from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.jar
#15 468.0 Downloading from central: https://repo.maven.apache.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#15 468.0 Downloading from central: https://repo.maven.apache.org/maven2/org/hamcrest/hamcrest-core/1.2.1/hamcrest-core-1.2.1.jar
#15 468.1 Progress (1): 4.1/4.6 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/nl/javadude/assumeng/assumeng/1.2.4/assumeng-1.2.4.jar (4.6 kB at 71 kB/s)
#15 468.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/hamcrest/hamcrest-core/1.2.1/hamcrest-core-1.2.1.jar (42 kB at 456 kB/s)
#15 468.1 Downloading from ome: https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#15 468.1 Downloading from imagej.public: https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
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#15 471.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-plugin-parameter-documenter/2.0.6/maven-plugin-parameter-documenter-2.0.6.jar
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#15 471.8 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/reporting/maven-reporting-api/2.0.6/maven-reporting-api-2.0.6.jar
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#15 471.8 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-utils/2.0.5/plexus-utils-2.0.5.jar
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#15 472.0 Executing ReadPhysicalSize
#15 472.4 Physical calibration - Image: 0
#15 472.4 X = 1.0 nm = 0.001 µm
#15 472.4 Y = 0.1 µm = 0.1 µm
#15 472.4 Success
#15 472.4 Executing FileConvert
#15 472.6 Success
#15 472.6 Executing FileExport
#15 472.6 Success
#15 472.6 Executing FileExportSPW
#15 473.1 Success
#15 473.1 Executing SimpleTiledWriter
#15 473.2 Success
#15 473.2 Executing TiledReaderWriter
#15 473.2 Success
#15 473.2 Executing TiledReaderWriter
#15 473.3 Success
#15 473.3 Executing OverlappedTiledWriter
#15 473.5 Success
#15 473.5 Executing OverlappedTiledWriter
#15 473.6 Success
#15 473.6 Executing ReadWriteInMemory
#15 473.6 Reading file into memory from disk...
#15 473.6 0 bytes read.
#15 473.6
#15 473.6 Reading image data from memory...
#15 473.6 Series count: 1
#15 473.6 First series:
#15 473.6 Image count = 1
#15 473.6 SizeX = 512
#15 473.6 SizeY = 512
#15 473.6 SizeZ = 1
#15 473.6 SizeC = 1
#15 473.6 SizeT = 1
#15 473.6
#15 473.6 Writing planes to destination in memory: .
#15 473.6
#15 473.6 Flushing image data to disk...
#15 473.6 Success
#15 473.6 Executing OrthogonalReader
#15 473.6 2026-01-14 08:13:45,373 [ExampleSuite.main()] INFO loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test.fake
#15 497.8 Success
#15 497.8 Executing SubResolutionExample
#15 497.8 Initializing file: /bio-formats-build/bio-formats-examples/target/classes/test&resolutions=4.fake
#15 497.8 2026-01-14 08:14:09,499 [ExampleSuite.main()] INFO loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test&resolutions=4.fake
#15 497.8 Series count = 1
#15 497.8 Resolution count for series #0 = 4
#15 497.8 Resolution #0 dimensions = 512 x 512
#15 497.8 Resolution #1 dimensions = 256 x 256
#15 497.8 Resolution #2 dimensions = 128 x 128
#15 497.8 Resolution #3 dimensions = 64 x 64
#15 497.8 Success
#15 497.8 Executing GeneratePyramidResolutions
#15 497.8 2026-01-14 08:14:09,501 [ExampleSuite.main()] INFO loci.formats.ImageReader - FakeReader initializing /bio-formats-build/bio-formats-examples/target/classes/test&sizeX=1024&sizeY=1024.fake
#15 497.8 Writing image to '/bio-formats-build/bio-formats-examples/target/classes/generatedPyramid.ome.tiff'...
#15 497.9 Done.
#15 497.9 Success
#15 497.9 [[1;34mINFO[m]
#15 497.9 [[1;34mINFO[m] [1m--- [0;32mmaven-jar-plugin:3.1.0:jar[m [1m(default-jar)[m @ [36mbio-formats-examples[0;1m ---[m
#15 497.9 [[1;34mINFO[m] Building jar: /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT.jar
#15 497.9 [[1;34mINFO[m]
#15 497.9 [[1;34mINFO[m] [1m--- [0;32mmaven-source-plugin:3.0.1:jar-no-fork[m [1m(attach-sources)[m @ [36mbio-formats-examples[0;1m ---[m
#15 497.9 [[1;34mINFO[m] Building jar: /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar
#15 497.9 [[1;34mINFO[m]
#15 497.9 [[1;34mINFO[m] [1m--- [0;32mmaven-install-plugin:2.5.2:install[m [1m(default-install)[m @ [36mbio-formats-examples[0;1m ---[m
#15 497.9 [[1;34mINFO[m] Installing /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT.jar to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT.jar
#15 497.9 [[1;34mINFO[m] Installing /bio-formats-build/bio-formats-examples/pom.xml to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT.pom
#15 497.9 [[1;34mINFO[m] Installing /bio-formats-build/bio-formats-examples/target/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar to /home/build/.m2/repository/ome/bio-formats-examples/8.4.0-SNAPSHOT/bio-formats-examples-8.4.0-SNAPSHOT-sources.jar
#15 497.9 [[1;34mINFO[m]
#15 497.9 [[1;34mINFO[m] [1m-------------------< [0;36mome:bio-formats-documentation[0;1m >--------------------[m
#15 498.0 [[1;34mINFO[m] [1mBuilding Bio-Formats documentation 8.4.0-SNAPSHOT [22/24][m
#15 498.0 [[1;34mINFO[m] [1m--------------------------------[ jar ]---------------------------------[m
#15 498.0 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/3.1.1/maven-dependency-plugin-3.1.1.pom
#15 498.0 Progress (1): 4.1 kB
Progress (1): 8.2 kB
Progress (1): 12 kB
Progress (1): 15 kB
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/3.1.1/maven-dependency-plugin-3.1.1.pom (15 kB at 129 kB/s)
#15 498.1 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-dependency-plugin/3.1.1/maven-dependency-plugin-3.1.1.jar
#15 498.1 Pro
#15 498.1 [output clipped, log limit 2MiB reached]
#15 504.3 WARNING: A restricted method in java.lang.System has been called
#15 504.3 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 504.3 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 504.3 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 504.3
#15 550.5 SLF4J: No SLF4J providers were found.
#15 550.5 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 550.5 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 550.9 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 550.9 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 550.9 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 550.9 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 558.7s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.1s
#17 [13/14] RUN ant jars tools
#17 0.596 Buildfile: /bio-formats-build/bioformats/build.xml
#17 1.106 [echo] isSnapshot = true
#17 1.208
#17 1.208 copy-jars:
#17 1.208
#17 1.208 deps-formats-api:
#17 1.291 [echo] isSnapshot = true
#17 1.343
#17 1.343 install-pom:
#17 1.524 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#17 1.535 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 1.539 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.541
#17 1.541 jar-formats-api:
#17 1.646 [echo] isSnapshot = true
#17 1.807
#17 1.807 init-title:
#17 1.807 [echo] ----------=========== formats-api ===========----------
#17 1.807
#17 1.807 init-timestamp:
#17 1.815
#17 1.815 init:
#17 1.815
#17 1.815 copy-resources:
#17 1.816 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.831 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.833
#17 1.833 compile:
#17 2.010 [resolver:resolve] Resolving artifacts
#17 2.036 [javac] Compiling 54 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.319 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 2.320 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 2.320 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 2.320 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 2.320 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 2.320 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 3.021 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:52: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.021 [javac] import loci.common.ReflectedUniverse;
#17 3.021 [javac] ^
#17 3.221 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.221 [javac] int currentIndex = r.getCoreIndex();
#17 3.221 [javac] ^
#17 3.221 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.221 [javac] r.setCoreIndex(coreIndex);
#17 3.221 [javac] ^
#17 3.221 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.221 [javac] r.setCoreIndex(currentIndex);
#17 3.221 [javac] ^
#17 3.422 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.422 [javac] public void setCoreIndex(int no) {
#17 3.422 [javac] ^
#17 3.422 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.422 [javac] public int getCoreIndex() {
#17 3.422 [javac] ^
#17 3.422 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.422 [javac] public int coreIndexToSeries(int index)
#17 3.422 [javac] ^
#17 3.422 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.422 [javac] public int seriesToCoreIndex(int series)
#17 3.422 [javac] ^
#17 3.422 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.422 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.423 [javac] ^
#17 3.523 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.523 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.523 [javac] ^
#17 3.523 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.523 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.523 [javac] ^
#17 3.523 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.523 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.523 [javac] ^
#17 3.523 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.523 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.523 [javac] ^
#17 3.523 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.524 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.524 [javac] ^
#17 3.624 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.624 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.624 [javac] ^
#17 3.624 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.624 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.624 [javac] ^
#17 3.724 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:773: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.725 [javac] public void setCoreIndex(int no) {
#17 3.725 [javac] ^
#17 3.725 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:767: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.725 [javac] public int getCoreIndex() {
#17 3.725 [javac] ^
#17 3.725 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:783: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.725 [javac] public int coreIndexToSeries(int index) {
#17 3.725 [javac] ^
#17 3.725 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:778: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.725 [javac] public int seriesToCoreIndex(int series) {
#17 3.725 [javac] ^
#17 3.725 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:587: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.725 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.725 [javac] ^
#17 3.725 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:588: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.725 [javac] return getReader().getCoreMetadataList();
#17 3.725 [javac] ^
#17 3.725 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:768: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.725 [javac] return getReader().getCoreIndex();
#17 3.725 [javac] ^
#17 3.725 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:774: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.725 [javac] getReader().setCoreIndex(no);
#17 3.726 [javac] ^
#17 3.726 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:779: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.726 [javac] return getReader().seriesToCoreIndex(series);
#17 3.726 [javac] ^
#17 3.726 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:784: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.726 [javac] return getReader().coreIndexToSeries(index);
#17 3.726 [javac] ^
#17 3.826 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.826 [javac] public void setCoreIndex(int no) {
#17 3.826 [javac] ^
#17 3.826 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.826 [javac] public int getCoreIndex() {
#17 3.826 [javac] ^
#17 3.826 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.826 [javac] public int coreIndexToSeries(int index) {
#17 3.827 [javac] ^
#17 3.827 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.827 [javac] public int seriesToCoreIndex(int series) {
#17 3.827 [javac] ^
#17 3.827 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.827 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.827 [javac] ^
#17 3.827 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.827 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.827 [javac] ^
#17 3.827 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.827 [javac] return reader.getCoreIndex();
#17 3.827 [javac] ^
#17 3.827 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.827 [javac] reader.setCoreIndex(no);
#17 3.827 [javac] ^
#17 3.827 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.827 [javac] return reader.seriesToCoreIndex(series);
#17 3.827 [javac] ^
#17 3.827 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.828 [javac] return reader.coreIndexToSeries(index);
#17 3.828 [javac] ^
#17 4.029 [javac] Note: Some input files use unchecked or unsafe operations.
#17 4.029 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 4.029 [javac] 40 warnings
#17 4.035
#17 4.035 formats-api.jar:
#17 4.035 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 4.061 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 4.094 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#17 4.097 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#17 4.099 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#17 4.100 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 4.102 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 4.103
#17 4.103 deps-turbojpeg:
#17 4.103
#17 4.103 jar-turbojpeg:
#17 4.198 [echo] isSnapshot = true
#17 4.332
#17 4.332 init-title:
#17 4.332 [echo] ----------=========== turbojpeg ===========----------
#17 4.332
#17 4.332 init-timestamp:
#17 4.333
#17 4.333 init:
#17 4.333
#17 4.333 copy-resources:
#17 4.333 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.334
#17 4.334 compile:
#17 4.343 [resolver:resolve] Resolving artifacts
#17 4.346 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.549 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 4.549 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 4.549 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 4.549 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 4.549 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 4.549 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 5.249 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.249 [javac] protected void finalize() throws Throwable {
#17 5.249 [javac] ^
#17 5.249 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.249 [javac] super.finalize();
#17 5.249 [javac] ^
#17 5.250 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.250 [javac] protected void finalize() throws Throwable {
#17 5.250 [javac] ^
#17 5.250 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.250 [javac] super.finalize();
#17 5.250 [javac] ^
#17 5.276 [javac] 8 warnings
#17 5.277
#17 5.277 jar:
#17 5.280 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.467 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#17 5.474 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#17 5.477 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#17 5.478 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 5.482 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.483
#17 5.483 deps-formats-bsd:
#17 5.483
#17 5.483 jar-formats-bsd:
#17 5.591 [echo] isSnapshot = true
#17 5.748
#17 5.748 init-title:
#17 5.749 [echo] ----------=========== formats-bsd ===========----------
#17 5.749
#17 5.749 init-timestamp:
#17 5.749
#17 5.749 init:
#17 5.749
#17 5.749 copy-resources:
#17 5.749 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.753 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.753
#17 5.753 compile:
#17 5.976 [resolver:resolve] Resolving artifacts
#17 6.000 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.208 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 6.208 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 6.208 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 6.208 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 6.208 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 6.208 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 7.510 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:45: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 7.510 [javac] import loci.common.ReflectedUniverse;
#17 7.510 [javac] ^
#17 7.910 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.910 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.910 [javac] ^
#17 7.910 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.910 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.910 [javac] ^
#17 7.910 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.910 [javac] int n = reader.getCoreMetadataList().size();
#17 7.910 [javac] ^
#17 7.910 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.910 [javac] reader.setCoreIndex(coreIndex);
#17 7.910 [javac] ^
#17 7.910 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.910 [javac] int n = reader.getCoreMetadataList().size();
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.911 [javac] int n = reader.getCoreMetadataList().size();
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.911 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.911 [javac] int n = reader.getCoreMetadataList().size();
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.911 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.911 [javac] int n = reader.getCoreMetadataList().size();
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.911 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.911 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.911 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.911 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.911 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.911 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.911 [javac] ^
#17 7.911 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.911 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.912 [javac] ^
#17 7.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.912 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.912 [javac] ^
#17 7.912 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.912 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.912 [javac] ^
#17 8.112 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 8.112 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 8.112 [javac] ^
#17 8.112 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.112 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 8.112 [javac] ^
#17 8.112 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 8.112 [javac] URL url = new URL(urlPath);
#17 8.112 [javac] ^
#17 8.213 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.213 [javac] BitWriter out = new BitWriter();
#17 8.213 [javac] ^
#17 8.213 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.213 [javac] BitWriter out = new BitWriter();
#17 8.213 [javac] ^
#17 8.313 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:537: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.313 [javac] return new Double(v);
#17 8.313 [javac] ^
#17 8.914 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2129: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.914 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.914 [javac] ^
#17 8.914 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2136: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.914 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.914 [javac] ^
#17 8.914 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2143: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.914 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.914 [javac] ^
#17 9.014 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.014 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 9.014 [javac] ^
#17 9.214 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:622: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.214 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 9.214 [javac] ^
#17 9.214 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 9.214 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 9.214 [javac] ^
#17 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.315 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 9.315 [javac] ^
#17 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.315 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 9.315 [javac] ^
#17 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.315 [javac] protected ReflectedUniverse r;
#17 9.315 [javac] ^
#17 9.315 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.315 [javac] r = new ReflectedUniverse();
#17 9.315 [javac] ^
#17 9.415 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1043: warning: [deprecation] NM in UNITS has been deprecated
#17 9.415 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 9.415 [javac] ^
#17 9.415 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1075: warning: [deprecation] MM in UNITS has been deprecated
#17 9.415 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 9.415 [javac] ^
#17 9.415 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1089: warning: [deprecation] MM in UNITS has been deprecated
#17 9.415 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 9.415 [javac] ^
#17 9.415 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 9.415 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 9.415 [javac] ^
#17 9.415 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1111: warning: [deprecation] MM in UNITS has been deprecated
#17 9.415 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 9.416 [javac] ^
#17 9.416 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1115: warning: [deprecation] MM in UNITS has been deprecated
#17 9.416 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 9.416 [javac] ^
#17 9.416 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1121: warning: [deprecation] MM in UNITS has been deprecated
#17 9.416 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 9.416 [javac] ^
#17 9.416 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1169: warning: [deprecation] MM in UNITS has been deprecated
#17 9.416 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 9.416 [javac] ^
#17 9.416 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1174: warning: [deprecation] MM in UNITS has been deprecated
#17 9.416 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 9.416 [javac] ^
#17 9.516 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.516 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.516 [javac] ^
#17 9.516 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.516 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.516 [javac] ^
#17 9.516 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.516 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.516 [javac] ^
#17 9.516 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.516 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.516 [javac] ^
#17 9.516 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:110: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.516 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.516 [javac] ^
#17 9.516 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:320: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.516 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.516 [javac] ^
#17 9.516 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:342: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.516 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.516 [javac] ^
#17 9.595 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.595 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.595 [javac] 56 warnings
#17 9.596
#17 9.596 formats-bsd.jar:
#17 9.606 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 9.719 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#17 9.722 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#17 9.724 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#17 9.726 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 9.728 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 9.728
#17 9.728 deps-formats-gpl:
#17 9.728
#17 9.728 jar-formats-gpl:
#17 9.830 [echo] isSnapshot = true
#17 9.963
#17 9.963 init-title:
#17 9.963 [echo] ----------=========== formats-gpl ===========----------
#17 9.963
#17 9.963 init-timestamp:
#17 9.964
#17 9.964 init:
#17 9.964
#17 9.964 copy-resources:
#17 9.964 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.965 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 9.966
#17 9.966 compile:
#17 10.32 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 10.85 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom
#17 11.23 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.23 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.41 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom
#17 11.54 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/netcdf-java-platform/5.6.0/netcdf-java-platform-5.6.0.pom (0 B at 0.0 KB/sec)
#17 11.60 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.82 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom
#17 11.94 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.pom (0 B at 0.0 KB/sec)
#17 12.00 [resolver:resolve] Resolving artifacts
#17 12.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.00 [resolver:resolve] Downloading https://repo1.maven.org/maven2/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.24 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar
#17 12.24 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar
#17 12.60 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/httpservices/5.6.0/httpservices-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.60 [resolver:resolve] Downloaded https://maven.scijava.org/content/groups/public/edu/ucar/cdm-core/5.6.0/cdm-core-5.6.0.jar (0 B at 0.0 KB/sec)
#17 12.62 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 12.83 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 12.83 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 12.83 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 12.83 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 12.83 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 12.83 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 14.03 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:50: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.03 [javac] import loci.formats.codec.BitWriter;
#17 14.03 [javac] ^
#17 14.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:43: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.13 [javac] import loci.formats.codec.BitWriter;
#17 14.13 [javac] ^
#17 16.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1321: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 16.13 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 16.13 [javac] ^
#17 16.13 [javac] cast to Object for a varargs call
#17 16.13 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 16.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.13 [javac] BitWriter bits = null;
#17 16.13 [javac] ^
#17 16.13 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.13 [javac] bits = new BitWriter(planes[index].length / 8);
#17 16.13 [javac] ^
#17 16.53 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 16.53 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 16.53 [javac] ^
#17 16.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 16.93 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 16.93 [javac] ^
#17 16.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 16.93 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 16.93 [javac] ^
#17 16.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.93 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.93 [javac] ^
#17 16.93 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 16.93 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 16.93 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.20 [javac] Variable variable = group.findVariable(variableName);
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 17.20 [javac] Variable variable = group.findVariable(variableName);
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 17.20 [javac] List<Attribute> attributes = variable.getAttributes();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.20 [javac] String groupName = group.getName();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 17.20 [javac] List<Attribute> attributes = group.getAttributes();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 17.20 [javac] String variableName = variable.getName();
#17 17.20 [javac] ^
#17 17.20 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 17.20 [javac] Group nextParent = parent.findGroup(token);
#17 17.20 [javac] ^
#17 17.20 [javac] Note: Some input files use unchecked or unsafe operations.
#17 17.20 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 17.20 [javac] 21 warnings
#17 17.20
#17 17.20 formats-gpl.jar:
#17 17.21 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 17.39 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#17 17.39 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#17 17.39 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#17 17.40 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 17.40 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 17.40
#17 17.40 deps-bio-formats-plugins:
#17 17.40
#17 17.40 jar-bio-formats-plugins:
#17 17.50 [echo] isSnapshot = true
#17 17.65
#17 17.65 init-title:
#17 17.65 [echo] ----------=========== bio-formats_plugins ===========----------
#17 17.65
#17 17.65 init-timestamp:
#17 17.66
#17 17.66 init:
#17 17.66
#17 17.66 copy-resources:
#17 17.66 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.66 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 17.66
#17 17.66 compile:
#17 17.92 [resolver:resolve] Resolving artifacts
#17 17.94 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 18.15 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 18.15 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 18.15 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 18.15 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 18.15 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 18.25 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:39: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.05 [javac] import loci.common.ReflectedUniverse;
#17 19.05 [javac] ^
#17 19.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:40: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.05 [javac] import loci.common.ReflectedUniverse;
#17 19.05 [javac] ^
#17 19.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 19.55 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 19.55 [javac] ^
#17 19.65 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 19.65 [javac] URL url = new URL(urlPath);
#17 19.65 [javac] ^
#17 19.65 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.65 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.65 [javac] ^
#17 19.65 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.65 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 19.65 [javac] ^
#17 19.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.75 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.75 [javac] ^
#17 19.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 19.75 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 19.75 [javac] ^
#17 20.05 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 20.05 [javac] url = new URL(path);
#17 20.05 [javac] ^
#17 20.15 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 20.15 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 20.15 [javac] 13 warnings
#17 20.18
#17 20.18 bio-formats-plugins.jar:
#17 20.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 20.26 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#17 20.26 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#17 20.31 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#17 20.31 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 20.31 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 20.31
#17 20.31 deps-bio-formats-tools:
#17 20.31
#17 20.31 jar-bio-formats-tools:
#17 20.41 [echo] isSnapshot = true
#17 20.55
#17 20.55 init-title:
#17 20.55 [echo] ----------=========== bio-formats-tools ===========----------
#17 20.55
#17 20.55 init-timestamp:
#17 20.55
#17 20.55 init:
#17 20.55
#17 20.55 copy-resources:
#17 20.55 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 20.55
#17 20.55 compile:
#17 20.79 [resolver:resolve] Resolving artifacts
#17 20.80 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 21.01 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 21.01 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 21.01 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 21.01 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 21.01 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 21.01 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 22.17 [javac] 4 warnings
#17 22.17
#17 22.17 bio-formats-tools.jar:
#17 22.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 22.19 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#17 22.19 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#17 22.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#17 22.21 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 22.21 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 22.21
#17 22.21 deps-tests:
#17 22.21
#17 22.21 jar-tests:
#17 22.30 [echo] isSnapshot = true
#17 22.44
#17 22.44 init-title:
#17 22.44 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 22.44
#17 22.44 init-timestamp:
#17 22.44
#17 22.44 init:
#17 22.44
#17 22.44 copy-resources:
#17 22.44 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 22.44
#17 22.44 compile:
#17 22.74 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 22.84 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.20 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.22 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 23.64 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.13 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 24.14 [resolver:resolve] Resolving artifacts
#17 24.15 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.22 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.57 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.58 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 24.99 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.26 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 25.27 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 25.47 [javac] warning: [options] bootstrap class path is not set in conjunction with -source 8
#17 25.47 [javac] not setting the bootstrap class path may lead to class files that cannot run on JDK 8
#17 25.47 [javac] --release 8 is recommended instead of -source 8 -target 1.8 because it sets the bootstrap class path automatically
#17 25.47 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release
#17 25.47 [javac] warning: [options] target value 8 is obsolete and will be removed in a future release
#17 25.57 [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
#17 26.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.58 [javac] int index = unflattenedReader.getCoreIndex();
#17 26.58 [javac] ^
#17 26.58 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 26.58 [javac] reader.setCoreIndex(index);
#17 26.58 [javac] ^
#17 26.88 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.88 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.88 [javac] ^
#17 26.88 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 26.88 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 26.88 [javac] ^
#17 27.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.17 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 27.17 [javac] ^
#17 27.17 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 27.17 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 27.17 [javac] ^
#17 27.17 [javac] Note: Some input files use unchecked or unsafe operations.
#17 27.17 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 27.17 [javac] 10 warnings
#17 27.17
#17 27.17 tests.jar:
#17 27.18 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 27.19 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#17 27.19 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#17 27.19 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#17 27.19 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 27.20 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 27.20
#17 27.20 jars:
#17 27.20
#17 27.20 copy-jars:
#17 27.20
#17 27.20 deps-formats-api:
#17 27.25 [echo] isSnapshot = true
#17 27.29
#17 27.29 install-pom:
#17 27.42 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/pom-bio-formats-8.4.0-SNAPSHOT.pom
#17 27.42 [resolver:install] Installing ome:pom-bio-formats:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 27.43 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 27.43
#17 27.43 jar-formats-api:
#17 27.51 [echo] isSnapshot = true
#17 27.64
#17 27.64 init-title:
#17 27.64 [echo] ----------=========== formats-api ===========----------
#17 27.64
#17 27.64 init-timestamp:
#17 27.64
#17 27.64 init:
#17 27.64
#17 27.64 copy-resources:
#17 27.64
#17 27.64 compile:
#17 27.81 [resolver:resolve] Resolving artifacts
#17 27.81
#17 27.81 formats-api.jar:
#17 27.83 [resolver:install] Using default POM (ome:formats-api:8.4.0-SNAPSHOT)
#17 27.83 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.pom
#17 27.84 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar
#17 27.84 [resolver:install] Installing ome:formats-api:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 27.84 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 27.84
#17 27.84 deps-turbojpeg:
#17 27.84
#17 27.84 jar-turbojpeg:
#17 27.92 [echo] isSnapshot = true
#17 28.05
#17 28.05 init-title:
#17 28.05 [echo] ----------=========== turbojpeg ===========----------
#17 28.05
#17 28.05 init-timestamp:
#17 28.05
#17 28.05 init:
#17 28.05
#17 28.05 copy-resources:
#17 28.05
#17 28.05 compile:
#17 28.05 [resolver:resolve] Resolving artifacts
#17 28.06
#17 28.06 jar:
#17 28.06 [resolver:install] Using default POM (ome:turbojpeg:8.4.0-SNAPSHOT)
#17 28.07 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.pom
#17 28.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar
#17 28.07 [resolver:install] Installing ome:turbojpeg:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 28.07 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 28.07
#17 28.07 deps-formats-bsd:
#17 28.07
#17 28.07 jar-formats-bsd:
#17 28.15 [echo] isSnapshot = true
#17 28.29
#17 28.29 init-title:
#17 28.29 [echo] ----------=========== formats-bsd ===========----------
#17 28.29
#17 28.29 init-timestamp:
#17 28.29
#17 28.29 init:
#17 28.29
#17 28.29 copy-resources:
#17 28.29
#17 28.29 compile:
#17 28.47 [resolver:resolve] Resolving artifacts
#17 28.49
#17 28.49 formats-bsd.jar:
#17 28.52 [resolver:install] Using default POM (ome:formats-bsd:8.4.0-SNAPSHOT)
#17 28.52 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.pom
#17 28.52 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar
#17 28.52 [resolver:install] Installing ome:formats-bsd:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 28.53 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 28.53
#17 28.53 deps-formats-gpl:
#17 28.53
#17 28.53 jar-formats-gpl:
#17 28.61 [echo] isSnapshot = true
#17 28.74
#17 28.74 init-title:
#17 28.74 [echo] ----------=========== formats-gpl ===========----------
#17 28.74
#17 28.74 init-timestamp:
#17 28.74
#17 28.74 init:
#17 28.74
#17 28.74 copy-resources:
#17 28.74
#17 28.74 compile:
#17 28.97 [resolver:resolve] Resolving artifacts
#17 28.98
#17 28.98 formats-gpl.jar:
#17 29.01 [resolver:install] Using default POM (ome:formats-gpl:8.4.0-SNAPSHOT)
#17 29.02 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.pom
#17 29.02 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar
#17 29.02 [resolver:install] Installing ome:formats-gpl:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 29.02 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 29.02
#17 29.02 deps-bio-formats-plugins:
#17 29.02
#17 29.02 jar-bio-formats-plugins:
#17 29.10 [echo] isSnapshot = true
#17 29.23
#17 29.23 init-title:
#17 29.23 [echo] ----------=========== bio-formats_plugins ===========----------
#17 29.23
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#17 29.23
#17 29.23 init:
#17 29.23
#17 29.23 copy-resources:
#17 29.23
#17 29.23 compile:
#17 29.46 [resolver:resolve] Resolving artifacts
#17 29.47
#17 29.47 bio-formats-plugins.jar:
#17 29.48 [resolver:install] Using default POM (ome:bio-formats_plugins:8.4.0-SNAPSHOT)
#17 29.49 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.pom
#17 29.49 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar
#17 29.49 [resolver:install] Installing ome:bio-formats_plugins:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 29.49 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 29.49
#17 29.49 deps-bio-formats-tools:
#17 29.49
#17 29.49 jar-bio-formats-tools:
#17 29.58 [echo] isSnapshot = true
#17 29.70
#17 29.70 init-title:
#17 29.70 [echo] ----------=========== bio-formats-tools ===========----------
#17 29.70
#17 29.70 init-timestamp:
#17 29.70
#17 29.70 init:
#17 29.70
#17 29.70 copy-resources:
#17 29.70
#17 29.70 compile:
#17 29.92 [resolver:resolve] Resolving artifacts
#17 29.93
#17 29.93 bio-formats-tools.jar:
#17 29.93 [resolver:install] Using default POM (ome:bio-formats-tools:8.4.0-SNAPSHOT)
#17 29.94 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.pom
#17 29.94 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar
#17 29.94 [resolver:install] Installing ome:bio-formats-tools:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 29.94 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 29.94
#17 29.94 deps-tests:
#17 29.94
#17 29.94 jar-tests:
#17 30.03 [echo] isSnapshot = true
#17 30.15
#17 30.15 init-title:
#17 30.15 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 30.15
#17 30.15 init-timestamp:
#17 30.15
#17 30.15 init:
#17 30.15
#17 30.15 copy-resources:
#17 30.16
#17 30.16 compile:
#17 30.39 [resolver:resolve] Resolving artifacts
#17 30.40
#17 30.40 tests.jar:
#17 30.41 [resolver:install] Using default POM (ome:test-suite:8.4.0-SNAPSHOT)
#17 30.41 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.pom
#17 30.41 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/test-suite-8.4.0-SNAPSHOT.jar
#17 30.41 [resolver:install] Installing ome:test-suite:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 30.41 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 30.41
#17 30.41 jars:
#17 30.41
#17 30.41 tools:
#17 30.41 [echo] ----------=========== bioformats_package ===========----------
#17 30.50 [echo] isSnapshot = true
#17 30.62
#17 30.62 init-timestamp:
#17 30.62
#17 30.62 bundle:
#17 30.85 [resolver:resolve] Resolving artifacts
#17 30.86 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/8.4.0-SNAPSHOT/bio-formats_plugins-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.89 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.1.3-SNAPSHOT/ome-common-6.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.91 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.93 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.94 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 30.99 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.01 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.06 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.06 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.26 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.31 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.32 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.37 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.38 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.39 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.39 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.54 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.97 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.97 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.97 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 31.98 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.05 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.05 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.06 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.5.3-SNAPSHOT/ome-xml-6.5.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.11 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.5.3-SNAPSHOT/specification-6.5.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.16 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/8.4.0-SNAPSHOT/formats-api-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.17 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.1.3-SNAPSHOT/ome-codecs-1.1.3-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.18 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.6-SNAPSHOT/ome-jai-0.1.6-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.30 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/8.4.0-SNAPSHOT/formats-bsd-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.37 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/8.4.0-SNAPSHOT/turbojpeg-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.41 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.41 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.50 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.52 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.92 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.94 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.97 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.06 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.07 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.09 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.10 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.29 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.35 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.41 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/8.4.0-SNAPSHOT/formats-gpl-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.49 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.3.5-SNAPSHOT/ome-mdbtools-5.3.5-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.51 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.3.10-SNAPSHOT/metakit-5.3.10-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.51 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.3.11-SNAPSHOT/ome-poi-5.3.11-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.62 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.06 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.13/httpclient-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.16 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.20 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.13/httpmime-4.5.13.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.21 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.3/re2j-1.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.22 [unzip] Expanding: /home/build/.m2/repository/commons-math/commons-math/1.2/commons-math-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.27 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/0.27/aircompressor-0.27.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
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#17 34.65 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.65 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.9/slf4j-api-2.0.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.67 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/8.4.0-SNAPSHOT/bio-formats-tools-8.4.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.67 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.69 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.04 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.3.16/logback-core-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.13 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.3.16/logback-classic-1.3.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.54 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.24 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 42.76 [resolver:install] Using default POM (ome:bioformats_package:8.4.0-SNAPSHOT)
#17 42.77 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.pom
#17 42.77 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/bioformats_package-8.4.0-SNAPSHOT.jar
#17 42.81 [resolver:install] Installing ome:bioformats_package:8.4.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/8.4.0-SNAPSHOT/maven-metadata-local.xml
#17 42.81 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 42.82
#17 42.82 BUILD SUCCESSFUL
#17 42.82 Total time: 42 seconds
#17 DONE 43.0s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.0s
#19 exporting to image
#19 exporting layers
#19 exporting layers 3.2s done
#19 writing image sha256:5f7ccb7f3d32a5855a3dc8c63ea3b38cf8c7f9c745071444e871c0bc071a0657 done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 3.2s
Finished: SUCCESS
