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#15 415.4 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-xml/3.0.0/plexus-xml-3.0.0.jar
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#15 415.4 Progress (3): 373 kB | 86 kB | 135/193 kB
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#15 415.4 Downloaded from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-interpolation/1.27/plexus-interpolation-1.27.jar (86 kB at 212 kB/s)
#15 415.4 Progress (2): 373 kB | 139/193 kB
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#15 415.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-core/2.1.0/doxia-core-2.1.0.jar
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#15 415.4 Progress (4): 93 kB | 12 kB | 0.1/1.4 MB | 11/183 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-site-model/2.1.0/doxia-site-model-2.1.0.jar
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#15 415.4 Progress (3): 12 kB | 0.2/1.4 MB | 175/183 kB
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Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-skin-model/2.1.0/doxia-skin-model-2.1.0.jar
#15 415.4 Progress (3): 12 kB | 0.2/1.4 MB | 179/183 kB
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Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-sink-api/2.1.0/doxia-sink-api-2.1.0.jar (12 kB at 25 kB/s)
#15 415.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/doxia/doxia-module-xhtml5/2.1.0/doxia-module-xhtml5-2.1.0.jar
#15 415.4 Progress (2): 0.6/1.4 MB | 183 kB
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#15 415.5 Downloading from central: https://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-velocity/2.3.0/plexus-velocity-2.3.0.jar
#15 415.5 Progress (2): 0.8/1.4 MB | 4.1/92 kB
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#15 420.1 Downloaded from central: https://repo.maven.apache.org/maven2/org/sonatype/plugins/nexus-staging-maven-plugin/1.6.7/nexus-staging-maven-plugin-1.6.7.jar (250 kB at 2.5 MB/s)
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#15 420.3 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.pom
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#15 420.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/felix/maven-bundle-plugin/5.1.9/maven-bundle-plugin-5.1.9.jar
#15 420.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-model/3.1.1/maven-model-3.1.1.jar
#15 420.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-artifact/3.1.1/maven-artifact-3.1.1.jar
#15 420.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-core/3.1.1/maven-core-3.1.1.jar
#15 420.4 Downloading from central: https://repo.maven.apache.org/maven2/org/apache/maven/maven-settings/3.1.1/maven-settings-3.1.1.jar
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#15 420.4 [output clipped, log limit 2MiB reached]
#15 464.1 WARNING: A restricted method in java.lang.System has been called
#15 464.1 WARNING: java.lang.System::load has been called by org.scijava.nativelib.NativeLibraryUtil in an unnamed module (file:/home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar)
#15 464.1 WARNING: Use --enable-native-access=ALL-UNNAMED to avoid a warning for callers in this module
#15 464.1 WARNING: Restricted methods will be blocked in a future release unless native access is enabled
#15 464.1
#15 515.1 SLF4J: No SLF4J providers were found.
#15 515.1 SLF4J: Defaulting to no-operation (NOP) logger implementation
#15 515.1 SLF4J: See https://www.slf4j.org/codes.html#noProviders for further details.
#15 515.4 WARNING: A Java agent has been loaded dynamically (/home/build/.m2/repository/net/bytebuddy/byte-buddy-agent/1.10.19/byte-buddy-agent-1.10.19.jar)
#15 515.4 WARNING: If a serviceability tool is in use, please run with -XX:+EnableDynamicAgentLoading to hide this warning
#15 515.4 WARNING: If a serviceability tool is not in use, please run with -Djdk.instrument.traceUsage for more information
#15 515.4 WARNING: Dynamic loading of agents will be disallowed by default in a future release
#15 DONE 523.6s
#16 [12/14] WORKDIR /bio-formats-build/bioformats
#16 DONE 0.2s
#17 [13/14] RUN ant jars tools
#17 0.434 Buildfile: /bio-formats-build/bioformats/build.xml
#17 0.850 [echo] isSnapshot = true
#17 0.958
#17 0.958 copy-jars:
#17 0.959
#17 0.959 deps-formats-api:
#17 1.045 [echo] isSnapshot = true
#17 1.204
#17 1.204 install-pom:
#17 1.394 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 1.406 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 1.418 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 1.420
#17 1.420 jar-formats-api:
#17 1.531 [echo] isSnapshot = true
#17 1.694
#17 1.694 init-title:
#17 1.695 [echo] ----------=========== formats-api ===========----------
#17 1.695
#17 1.695 init-timestamp:
#17 1.703
#17 1.703 init:
#17 1.703
#17 1.703 copy-resources:
#17 1.705 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.720 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 1.722
#17 1.722 compile:
#17 1.898 [resolver:resolve] Resolving artifacts
#17 1.923 [javac] Compiling 59 source files to /bio-formats-build/bioformats/components/formats-api/build/classes
#17 2.137 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 2.138 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 2.138 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 3.140 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:150: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.141 [javac] int currentIndex = r.getCoreIndex();
#17 3.141 [javac] ^
#17 3.142 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:151: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.142 [javac] r.setCoreIndex(coreIndex);
#17 3.142 [javac] ^
#17 3.142 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/CoreMetadata.java:179: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.142 [javac] r.setCoreIndex(currentIndex);
#17 3.143 [javac] ^
#17 3.243 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1442: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.244 [javac] public void setCoreIndex(int no) {
#17 3.244 [javac] ^
#17 3.244 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1436: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.245 [javac] public int getCoreIndex() {
#17 3.245 [javac] ^
#17 3.245 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1362: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.245 [javac] public int coreIndexToSeries(int index)
#17 3.246 [javac] ^
#17 3.246 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1330: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.246 [javac] public int seriesToCoreIndex(int series)
#17 3.246 [javac] ^
#17 3.246 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatReader.java:1208: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.246 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.247 [javac] ^
#17 3.347 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:132: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.348 [javac] if (nativeReaderInitialized) nativeReader.setCoreIndex(no);
#17 3.348 [javac] ^
#17 3.349 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:133: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.349 [javac] if (legacyReaderInitialized) legacyReader.setCoreIndex(no);
#17 3.349 [javac] ^
#17 3.349 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:309: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.350 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 3.350 [javac] ^
#17 3.350 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/DelegateReader.java:314: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.350 [javac] core = new ArrayList<CoreMetadata>(legacyReader.getCoreMetadataList());
#17 3.350 [javac] ^
#17 3.451 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:266: warning: [deprecation] URL(String) in URL has been deprecated
#17 3.452 [javac] Manifest manifest = new Manifest(new URL(manifestPath).openStream());
#17 3.454 [javac] ^
#17 3.454 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.454 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.454 [javac] ^
#17 3.454 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/FormatTools.java:1294: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 3.455 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 3.455 [javac] ^
#17 3.556 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:791: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.557 [javac] public void setCoreIndex(int no) {
#17 3.557 [javac] ^
#17 3.558 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:785: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.559 [javac] public int getCoreIndex() {
#17 3.559 [javac] ^
#17 3.559 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:801: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.559 [javac] public int coreIndexToSeries(int index) {
#17 3.559 [javac] ^
#17 3.560 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:796: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.560 [javac] public int seriesToCoreIndex(int series) {
#17 3.560 [javac] ^
#17 3.560 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:605: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.560 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.560 [javac] ^
#17 3.561 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:606: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.561 [javac] return getReader().getCoreMetadataList();
#17 3.561 [javac] ^
#17 3.562 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:786: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.562 [javac] return getReader().getCoreIndex();
#17 3.562 [javac] ^
#17 3.563 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:792: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.563 [javac] getReader().setCoreIndex(no);
#17 3.563 [javac] ^
#17 3.563 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:797: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.563 [javac] return getReader().seriesToCoreIndex(series);
#17 3.564 [javac] ^
#17 3.564 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ImageReader.java:802: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.564 [javac] return getReader().coreIndexToSeries(index);
#17 3.564 [javac] ^
#17 3.665 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:629: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.665 [javac] public void setCoreIndex(int no) {
#17 3.665 [javac] ^
#17 3.665 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:624: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.666 [javac] public int getCoreIndex() {
#17 3.666 [javac] ^
#17 3.666 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:639: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.666 [javac] public int coreIndexToSeries(int index) {
#17 3.667 [javac] ^
#17 3.667 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:634: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.668 [javac] public int seriesToCoreIndex(int series) {
#17 3.668 [javac] ^
#17 3.668 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:537: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.668 [javac] public List<CoreMetadata> getCoreMetadataList() {
#17 3.668 [javac] ^
#17 3.669 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:539: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 3.669 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 3.669 [javac] ^
#17 3.669 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:625: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 3.669 [javac] return reader.getCoreIndex();
#17 3.670 [javac] ^
#17 3.670 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:630: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 3.670 [javac] reader.setCoreIndex(no);
#17 3.670 [javac] ^
#17 3.670 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:635: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 3.670 [javac] return reader.seriesToCoreIndex(series);
#17 3.671 [javac] ^
#17 3.671 [javac] /bio-formats-build/bioformats/components/formats-api/src/loci/formats/ReaderWrapper.java:640: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 3.671 [javac] return reader.coreIndexToSeries(index);
#17 3.672 [javac] ^
#17 3.859 [javac] Note: Some input files use unchecked or unsafe operations.
#17 3.860 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 3.860 [javac] 36 warnings
#17 3.862
#17 3.862 formats-api.jar:
#17 3.862 [mkdir] Created dir: /bio-formats-build/bioformats/artifacts
#17 3.889 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-api.jar
#17 3.923 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 3.927 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 3.928 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 3.929 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 3.933 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 3.934
#17 3.934 deps-turbojpeg:
#17 3.934
#17 3.934 jar-turbojpeg:
#17 4.037 [echo] isSnapshot = true
#17 4.173
#17 4.173 init-title:
#17 4.173 [echo] ----------=========== turbojpeg ===========----------
#17 4.173
#17 4.173 init-timestamp:
#17 4.173
#17 4.173 init:
#17 4.173
#17 4.173 copy-resources:
#17 4.174 [mkdir] Created dir: /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.174
#17 4.174 compile:
#17 4.184 [resolver:resolve] Resolving artifacts
#17 4.186 [javac] Compiling 8 source files to /bio-formats-build/bioformats/components/forks/turbojpeg/build/classes
#17 4.403 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 4.403 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 4.403 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 4.905 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:449: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.905 [javac] protected void finalize() throws Throwable {
#17 4.905 [javac] ^
#17 4.905 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJCompressor.java:455: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 4.905 [javac] super.finalize();
#17 4.905 [javac] ^
#17 5.005 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:504: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.005 [javac] protected void finalize() throws Throwable {
#17 5.005 [javac] ^
#17 5.005 [javac] /bio-formats-build/bioformats/components/forks/turbojpeg/src/org/libjpegturbo/turbojpeg/TJDecompressor.java:510: warning: [removal] finalize() in Object has been deprecated and marked for removal
#17 5.006 [javac] super.finalize();
#17 5.006 [javac] ^
#17 5.006 [javac] 5 warnings
#17 5.007
#17 5.007 jar:
#17 5.011 [jar] Building jar: /bio-formats-build/bioformats/artifacts/turbojpeg.jar
#17 5.186 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 5.194 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 5.196 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 5.198 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 5.201 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 5.203
#17 5.203 deps-formats-bsd:
#17 5.203
#17 5.203 jar-formats-bsd:
#17 5.329 [echo] isSnapshot = true
#17 5.489
#17 5.489 init-title:
#17 5.489 [echo] ----------=========== formats-bsd ===========----------
#17 5.489
#17 5.489 init-timestamp:
#17 5.490
#17 5.490 init:
#17 5.491
#17 5.491 copy-resources:
#17 5.491 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.494 [copy] Copying 1 file to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 5.495
#17 5.495 compile:
#17 5.726 [resolver:resolve] Resolving artifacts
#17 5.746 [javac] Compiling 177 source files to /bio-formats-build/bioformats/components/formats-bsd/build/classes
#17 6.058 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 6.058 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 6.058 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 7.660 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:297: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.660 [javac] core.size() != reader.getCoreMetadataList().size())
#17 7.661 [javac] ^
#17 7.661 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/DimensionSwapper.java:301: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.661 [javac] List<CoreMetadata> oldcore = reader.getCoreMetadataList();
#17 7.661 [javac] ^
#17 7.762 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:581: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.762 [javac] int n = reader.getCoreMetadataList().size();
#17 7.762 [javac] ^
#17 7.762 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:602: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.762 [javac] reader.setCoreIndex(coreIndex);
#17 7.762 [javac] ^
#17 7.762 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:609: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.762 [javac] int n = reader.getCoreMetadataList().size();
#17 7.762 [javac] ^
#17 7.762 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:620: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.762 [javac] int n = reader.getCoreMetadataList().size();
#17 7.762 [javac] ^
#17 7.762 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:621: warning: [deprecation] seriesToCoreIndex(int) in IFormatReader has been deprecated
#17 7.762 [javac] if (n > 1 || noStitch) return reader.seriesToCoreIndex(series);
#17 7.763 [javac] ^
#17 7.763 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:628: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.763 [javac] int n = reader.getCoreMetadataList().size();
#17 7.763 [javac] ^
#17 7.763 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:629: warning: [deprecation] coreIndexToSeries(int) in IFormatReader has been deprecated
#17 7.763 [javac] if (n > 1 || noStitch) return reader.coreIndexToSeries(index);
#17 7.763 [javac] ^
#17 7.763 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:637: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.763 [javac] int n = reader.getCoreMetadataList().size();
#17 7.763 [javac] ^
#17 7.763 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:638: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 7.764 [javac] if (n > 1 || noStitch) reader.setCoreIndex(no);
#17 7.764 [javac] ^
#17 7.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.764 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.764 [javac] ^
#17 7.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:649: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 7.764 [javac] return reader.getCoreIndex() > 0 ? reader.getCoreIndex() : coreIndex;
#17 7.764 [javac] ^
#17 7.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:873: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.764 [javac] return noStitch ? reader.getCoreMetadataList() : core;
#17 7.764 [javac] ^
#17 7.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1096: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.764 [javac] if (reader.getCoreMetadataList().size() > 1 && externals.length > 1) {
#17 7.764 [javac] ^
#17 7.764 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1121: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.764 [javac] seriesCount = reader.getCoreMetadataList().size();
#17 7.765 [javac] ^
#17 7.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1211: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.765 [javac] if (reader.getCoreMetadataList().size() == 1 && getSeriesCount() > 1) {
#17 7.765 [javac] ^
#17 7.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1229: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.765 [javac] if (reader.getCoreMetadataList().size() > 1) return 0;
#17 7.765 [javac] ^
#17 7.765 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/FileStitcher.java:1385: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.765 [javac] r.setCoreIndex(reader.getCoreMetadataList().size() > 1 ? sno : 0);
#17 7.765 [javac] ^
#17 7.966 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/MinMaxCalculator.java:387: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 7.966 [javac] int seriesCount = unwrap().getCoreMetadataList().size();
#17 7.966 [javac] ^
#17 7.966 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:70: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.966 [javac] public static final String STABLE_VERSION = "6.6.0";
#17 7.966 [javac] ^
#17 7.967 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:101: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 7.967 [javac] public static final String OLD_TOOLS = "loci_tools.jar";
#17 7.967 [javac] ^
#17 7.967 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:230: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.967 [javac] URLConnection conn = new URL(query.toString()).openConnection();
#17 7.967 [javac] ^
#17 7.967 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/UpgradeChecker.java:314: warning: [deprecation] URL(String) in URL has been deprecated
#17 7.968 [javac] URL url = new URL(urlPath);
#17 7.968 [javac] ^
#17 8.068 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitBuffer.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.068 [javac] public class BitBuffer {
#17 8.068 [javac] ^
#17 8.068 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/BitWriter.java:41: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 8.068 [javac] public class BitWriter {
#17 8.068 [javac] ^
#17 8.068 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.068 [javac] BitWriter out = new BitWriter();
#17 8.068 [javac] ^
#17 8.068 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/codec/NikonCodec.java:194: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 8.068 [javac] BitWriter out = new BitWriter();
#17 8.068 [javac] ^
#17 8.269 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/dicom/DicomTag.java:534: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.270 [javac] return new Double(v);
#17 8.270 [javac] ^
#17 8.971 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2214: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.971 [javac] return FormatTools.getPhysicalSizeX(new Double(pixelSizeX), UNITS.MILLIMETER);
#17 8.972 [javac] ^
#17 8.973 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2221: warning: [removal] Double(String) in Double has been deprecated and marked for removal
#17 8.974 [javac] return FormatTools.getPhysicalSizeY(new Double(pixelSizeY), UNITS.MILLIMETER);
#17 8.975 [javac] ^
#17 8.975 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/DicomReader.java:2228: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 8.975 [javac] return FormatTools.getPhysicalSizeZ(new Double(pixelSizeZ), UNITS.MILLIMETER);
#17 8.975 [javac] ^
#17 9.075 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/ICSReader.java:1142: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.075 [javac] channelNames.put(new Integer(channelNames.size()), value);
#17 9.076 [javac] ^
#17 9.376 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:629: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.376 [javac] OMETiffCoreMetadata baseCore = new OMETiffCoreMetadata(reader.getCoreMetadataList().get(0));
#17 9.376 [javac] ^
#17 9.377 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1387: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.377 [javac] public MetadataStore getMetadataStoreForDisplay() {
#17 9.377 [javac] ^
#17 9.377 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/OMETiffReader.java:1405: warning: [dep-ann] deprecated item is not annotated with @Deprecated
#17 9.377 [javac] public MetadataStore getMetadataStoreForConversion() {
#17 9.377 [javac] ^
#17 9.378 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/PGMReader.java:158: warning: [deprecation] StreamTokenizer(InputStream) in StreamTokenizer has been deprecated
#17 9.379 [javac] StreamTokenizer st = new StreamTokenizer(in);
#17 9.379 [javac] ^
#17 9.479 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/SlideBook7Reader.java:3095: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.480 [javac] store.setPlaneExposureTime(new Time(new Double(expTime), UNITS.MILLISECOND), capture, imageIndex);
#17 9.480 [javac] ^
#17 9.581 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffDelegateReader.java:95: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 9.581 [javac] core = new ArrayList<CoreMetadata>(nativeReader.getCoreMetadataList());
#17 9.581 [javac] ^
#17 9.581 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:74: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.582 [javac] protected ReflectedUniverse r;
#17 9.582 [javac] ^
#17 9.582 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/in/TiffJAIReader.java:103: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 9.582 [javac] r = new ReflectedUniverse();
#17 9.582 [javac] ^
#17 9.682 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1044: warning: [deprecation] NM in UNITS has been deprecated
#17 9.682 [javac] wavelength.value = new float[] {wave == null ? 1f : wave.value(UNITS.NM).floatValue()};
#17 9.682 [javac] ^
#17 9.682 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1076: warning: [deprecation] MM in UNITS has been deprecated
#17 9.682 [javac] double pz = physicalZ.value(UNITS.MM).doubleValue();
#17 9.682 [javac] ^
#17 9.682 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1090: warning: [deprecation] MM in UNITS has been deprecated
#17 9.682 [javac] double px = physicalX == null ? 1.0 : physicalX.value(UNITS.MM).doubleValue();
#17 9.683 [javac] ^
#17 9.683 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1091: warning: [deprecation] MM in UNITS has been deprecated
#17 9.684 [javac] double py = physicalY == null ? 1.0 : physicalY.value(UNITS.MM).doubleValue();
#17 9.684 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1112: warning: [deprecation] MM in UNITS has been deprecated
#17 9.684 [javac] volumeWidth.value = new float[] {physicalX == null ? 1f : physicalX.value(UNITS.MM).floatValue() * width};
#17 9.684 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1116: warning: [deprecation] MM in UNITS has been deprecated
#17 9.684 [javac] volumeHeight.value = new float[] {physicalY == null ? 1f : physicalY.value(UNITS.MM).floatValue() * height};
#17 9.684 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1122: warning: [deprecation] MM in UNITS has been deprecated
#17 9.684 [javac] volumeDepth.value = new float[] {physicalZ == null ? 1f : physicalZ.value(UNITS.MM).floatValue() * sizeZ};
#17 9.684 [javac] ^
#17 9.684 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1170: warning: [deprecation] MM in UNITS has been deprecated
#17 9.685 [javac] double ox = physicalX.value(UNITS.MM).floatValue() * width;
#17 9.685 [javac] ^
#17 9.685 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/DicomWriter.java:1175: warning: [deprecation] MM in UNITS has been deprecated
#17 9.685 [javac] double oy = physicalY.value(UNITS.MM).floatValue() * height;
#17 9.685 [javac] ^
#17 9.785 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.785 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.785 [javac] ^
#17 9.785 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:223: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.785 [javac] ifd.put(new Integer(IFD.TILE_WIDTH), new Long(getTileSizeX()));
#17 9.785 [javac] ^
#17 9.785 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
#17 9.785 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.785 [javac] ^
#17 9.786 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/out/TiffWriter.java:224: warning: [removal] Long(long) in Long has been deprecated and marked for removal
#17 9.786 [javac] ifd.put(new Integer(IFD.TILE_LENGTH), new Long(getTileSizeY()));
#17 9.786 [javac] ^
#17 9.887 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/services/JPEGTurboServiceImpl.java:113: warning: [deprecation] loadNativeLibrary(Class<?>,String) in NativeLibraryUtil has been deprecated
#17 9.887 [javac] libraryLoaded = NativeLibraryUtil.loadNativeLibrary(TJ.class, "turbojpeg");
#17 9.887 [javac] ^
#17 9.888 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:324: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.888 [javac] doubleResult[i] = new Double(result.get(i).doubleValue());
#17 9.888 [javac] ^
#17 9.889 [javac] /bio-formats-build/bioformats/components/formats-bsd/src/loci/formats/tools/AmiraParameters.java:346: warning: [removal] Double(double) in Double has been deprecated and marked for removal
#17 9.889 [javac] result[i] = new Double(readNumber().doubleValue());
#17 9.889 [javac] ^
#17 9.889 [javac] Note: Some input files use unchecked or unsafe operations.
#17 9.889 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 9.889 [javac] 58 warnings
#17 9.920
#17 9.920 formats-bsd.jar:
#17 9.927 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-bsd.jar
#17 10.03 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 10.04 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 10.04 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 10.04 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 10.04 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 10.04
#17 10.04 deps-formats-gpl:
#17 10.04
#17 10.04 jar-formats-gpl:
#17 10.13 [echo] isSnapshot = true
#17 10.28
#17 10.28 init-title:
#17 10.28 [echo] ----------=========== formats-gpl ===========----------
#17 10.28
#17 10.28 init-timestamp:
#17 10.28
#17 10.28 init:
#17 10.28
#17 10.28 copy-resources:
#17 10.28 [mkdir] Created dir: /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.28 [copy] Copying 2 files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.28
#17 10.28 compile:
#17 10.54 [resolver:resolve] Resolving artifacts
#17 10.56 [javac] Compiling 178 source files to /bio-formats-build/bioformats/components/formats-gpl/build/classes
#17 10.77 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 10.77 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 10.77 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 14.48 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/LeicaReader.java:1325: warning: non-varargs call of varargs method with inexact argument type for last parameter;
#17 14.48 [javac] LOGGER.trace("Parsing tokens: {}", tokens);
#17 14.48 [javac] ^
#17 14.48 [javac] cast to Object for a varargs call
#17 14.48 [javac] cast to Object[] for a non-varargs call and to suppress this warning
#17 14.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1269: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.68 [javac] BitWriter bits = null;
#17 14.68 [javac] ^
#17 14.68 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/MIASReader.java:1271: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 14.68 [javac] bits = new BitWriter(planes[index].length / 8);
#17 14.68 [javac] ^
#17 15.08 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/OlympusTileReader.java:196: warning: [deprecation] getCoreMetadataList() in IFormatReader has been deprecated
#17 15.08 [javac] CoreMetadata ms = new CoreMetadata(helperReader.getCoreMetadataList().get(0));
#17 15.08 [javac] ^
#17 15.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:469: warning: [deprecation] getImmersion(String) in FormatReader has been deprecated
#17 15.58 [javac] store.setObjectiveImmersion(getImmersion(immersion), 0, index);
#17 15.58 [javac] ^
#17 15.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TissueFAXSReader.java:487: warning: [deprecation] getAcquisitionMode(String) in FormatReader has been deprecated
#17 15.58 [javac] AcquisitionMode mode = getAcquisitionMode(acquisitionMode);
#17 15.58 [javac] ^
#17 15.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.58 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 15.58 [javac] ^
#17 15.58 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/in/TrestleReader.java:372: warning: [deprecation] BitWriter in loci.formats.codec has been deprecated
#17 15.58 [javac] BitWriter bits = new BitWriter(roiPixels.length / 8);
#17 15.58 [javac] ^
#17 15.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:170: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 15.94 [javac] Variable variable = group.findVariable(variableName);
#17 15.94 [javac] ^
#17 15.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:197: warning: [deprecation] findVariable(String) in Group has been deprecated
#17 15.94 [javac] Variable variable = group.findVariable(variableName);
#17 15.94 [javac] ^
#17 15.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:200: warning: [deprecation] getAttributes() in Variable has been deprecated
#17 15.94 [javac] List<Attribute> attributes = variable.getAttributes();
#17 15.94 [javac] ^
#17 15.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:238: warning: [deprecation] getName() in CDMNode has been deprecated
#17 15.94 [javac] String groupName = group.getName();
#17 15.94 [javac] ^
#17 15.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:239: warning: [deprecation] getAttributes() in Group has been deprecated
#17 15.94 [javac] List<Attribute> attributes = group.getAttributes();
#17 15.94 [javac] ^
#17 15.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:247: warning: [deprecation] getName() in CDMNode has been deprecated
#17 15.94 [javac] String variableName = variable.getName();
#17 15.94 [javac] ^
#17 15.94 [javac] /bio-formats-build/bioformats/components/formats-gpl/src/loci/formats/services/NetCDFServiceImpl.java:270: warning: [deprecation] findGroup(String) in Group has been deprecated
#17 15.94 [javac] Group nextParent = parent.findGroup(token);
#17 15.94 [javac] ^
#17 15.94 [javac] Note: Some input files use unchecked or unsafe operations.
#17 15.94 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 15.94 [javac] 16 warnings
#17 15.94
#17 15.94 formats-gpl.jar:
#17 15.95 [jar] Building jar: /bio-formats-build/bioformats/artifacts/formats-gpl.jar
#17 16.08 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 16.08 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 16.08 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 16.08 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 16.09 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 16.09
#17 16.09 deps-bio-formats-plugins:
#17 16.09
#17 16.09 jar-bio-formats-plugins:
#17 16.19 [echo] isSnapshot = true
#17 16.34
#17 16.34 init-title:
#17 16.34 [echo] ----------=========== bio-formats_plugins ===========----------
#17 16.34
#17 16.34 init-timestamp:
#17 16.34
#17 16.34 init:
#17 16.34
#17 16.34 copy-resources:
#17 16.34 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.35 [copy] Copying 3 files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.35
#17 16.35 compile:
#17 16.62 [resolver:resolve] Resolving artifacts
#17 16.63 [javac] Compiling 70 source files to /bio-formats-build/bioformats/components/bio-formats-plugins/build/classes
#17 16.95 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 16.95 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 16.95 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 18.35 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/Updater.java:51: warning: [deprecation] STABLE_VERSION in UpgradeChecker has been deprecated
#17 18.35 [javac] "Stable build (" + UpgradeChecker.STABLE_VERSION + ")";
#17 18.35 [javac] ^
#17 18.45 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/InstallWizard.java:119: warning: [deprecation] URL(String) in URL has been deprecated
#17 18.45 [javac] URL url = new URL(urlPath);
#17 18.45 [javac] ^
#17 18.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.55 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 18.55 [javac] ^
#17 18.55 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/ImportProcess.java:632: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.55 [javac] ReflectedUniverse r = new ReflectedUniverse();
#17 18.55 [javac] ^
#17 18.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.75 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 18.75 [javac] ^
#17 18.75 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/in/DisplayHandler.java:161: warning: [deprecation] ReflectedUniverse in loci.common has been deprecated
#17 18.75 [javac] ReflectedUniverse ru = new ReflectedUniverse();
#17 18.75 [javac] ^
#17 18.95 [javac] /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/shortcut/ShortcutPanel.java:102: warning: [deprecation] URL(String) in URL has been deprecated
#17 18.95 [javac] url = new URL(path);
#17 18.95 [javac] ^
#17 19.10 [javac] Note: /bio-formats-build/bioformats/components/bio-formats-plugins/src/loci/plugins/config/ConfigWindow.java uses unchecked or unsafe operations.
#17 19.10 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 19.10 [javac] 8 warnings
#17 19.10
#17 19.10 bio-formats-plugins.jar:
#17 19.10 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar
#17 19.13 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 19.13 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 19.14 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 19.14 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 19.14 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 19.14
#17 19.14 deps-bio-formats-tools:
#17 19.14
#17 19.14 jar-bio-formats-tools:
#17 19.22 [echo] isSnapshot = true
#17 21.38
#17 21.38 init-title:
#17 21.38 [echo] ----------=========== bio-formats-tools ===========----------
#17 21.38
#17 21.38 init-timestamp:
#17 21.38
#17 21.38 init:
#17 21.38
#17 21.38 copy-resources:
#17 21.38 [mkdir] Created dir: /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 21.38
#17 21.38 compile:
#17 21.66 [resolver:resolve] Resolving artifacts
#17 21.67 [javac] Compiling 10 source files to /bio-formats-build/bioformats/components/bio-formats-tools/build/classes
#17 21.98 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 21.98 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 21.98 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 23.21 [javac] 1 warning
#17 23.21
#17 23.21 bio-formats-tools.jar:
#17 23.21 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar
#17 23.22 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 23.22 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 23.22 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 23.22 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 23.23 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 23.23
#17 23.23 deps-tests:
#17 23.23
#17 23.23 jar-tests:
#17 23.33 [echo] isSnapshot = true
#17 23.45
#17 23.45 init-title:
#17 23.45 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 23.46
#17 23.46 init-timestamp:
#17 23.46
#17 23.46 init:
#17 23.46
#17 23.46 copy-resources:
#17 23.46 [mkdir] Created dir: /bio-formats-build/bioformats/components/test-suite/build/classes
#17 23.46
#17 23.46 compile:
#17 23.86 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.17 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.57 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.59 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 24.87 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom
#17 25.32 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18.pom (0 B at 0.0 KB/sec)
#17 25.34 [resolver:resolve] Resolving artifacts
#17 25.35 [resolver:resolve] Downloading https://repo1.maven.org/maven2/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.43 [resolver:resolve] Downloading https://maven.scijava.org/content/groups/public/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.78 [resolver:resolve] Downloading https://artifacts.openmicroscopy.org/artifactory/maven/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 25.79 [resolver:resolve] Downloading https://artifacts.unidata.ucar.edu/repository/unidata-releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.06 [resolver:resolve] Downloading https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar
#17 26.45 [resolver:resolve] Downloaded https://repo.jenkins-ci.org/releases/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar (0 B at 0.0 KB/sec)
#17 26.45 [javac] Compiling 23 source files to /bio-formats-build/bioformats/components/test-suite/build/classes
#17 26.76 [javac] warning: [options] location of system modules is not set in conjunction with -source 11
#17 26.76 [javac] not setting the location of system modules may lead to class files that cannot run on JDK 11
#17 26.76 [javac] --release 11 is recommended instead of -source 11 -target 11 because it sets the location of system modules automatically
#17 27.76 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:676: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 27.76 [javac] int index = unflattenedReader.getCoreIndex();
#17 27.76 [javac] ^
#17 27.76 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/Configuration.java:677: warning: [deprecation] setCoreIndex(int) in IFormatReader has been deprecated
#17 27.76 [javac] reader.setCoreIndex(index);
#17 27.76 [javac] ^
#17 28.06 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2348: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.06 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 28.06 [javac] ^
#17 28.06 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/FormatReaderTest.java:2514: warning: [deprecation] getCoreIndex() in IFormatReader has been deprecated
#17 28.06 [javac] config.setSeries(resolutionReader.getCoreIndex());
#17 28.06 [javac] ^
#17 28.34 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:52: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 28.34 [javac] FormatReaderTest i1 = (FormatReaderTest) m1.getInstances()[0];
#17 28.34 [javac] ^
#17 28.34 [javac] /bio-formats-build/bioformats/components/test-suite/src/loci/tests/testng/OrderingListener.java:53: warning: [deprecation] getInstances() in IMethodInstance has been deprecated
#17 28.34 [javac] FormatReaderTest i2 = (FormatReaderTest) m2.getInstances()[0];
#17 28.34 [javac] ^
#17 28.34 [javac] Note: Some input files use unchecked or unsafe operations.
#17 28.34 [javac] Note: Recompile with -Xlint:unchecked for details.
#17 28.34 [javac] 7 warnings
#17 28.34
#17 28.34 tests.jar:
#17 28.34 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar
#17 28.35 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 28.36 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 28.36 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 28.36 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 28.36 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 28.36
#17 28.36 jars:
#17 28.36
#17 28.36 copy-jars:
#17 28.36
#17 28.36 deps-formats-api:
#17 28.41 [echo] isSnapshot = true
#17 28.46
#17 28.46 install-pom:
#17 28.58 [resolver:install] Installing /bio-formats-build/bioformats/pom.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/pom-bio-formats-9.0.0-SNAPSHOT.pom
#17 28.59 [resolver:install] Installing ome:pom-bio-formats:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 28.59 [resolver:install] Installing ome:pom-bio-formats/maven-metadata.xml to /home/build/.m2/repository/ome/pom-bio-formats/maven-metadata-local.xml
#17 28.59
#17 28.59 jar-formats-api:
#17 28.68 [echo] isSnapshot = true
#17 28.80
#17 28.80 init-title:
#17 28.80 [echo] ----------=========== formats-api ===========----------
#17 28.80
#17 28.80 init-timestamp:
#17 28.80
#17 28.80 init:
#17 28.80
#17 28.80 copy-resources:
#17 28.80
#17 28.80 compile:
#17 28.97 [resolver:resolve] Resolving artifacts
#17 28.97
#17 28.97 formats-api.jar:
#17 28.99 [resolver:install] Using default POM (ome:formats-api:9.0.0-SNAPSHOT)
#17 29.00 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-api/pom.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.pom
#17 29.00 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-api.jar to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar
#17 29.00 [resolver:install] Installing ome:formats-api:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 29.00 [resolver:install] Installing ome:formats-api/maven-metadata.xml to /home/build/.m2/repository/ome/formats-api/maven-metadata-local.xml
#17 29.00
#17 29.00 deps-turbojpeg:
#17 29.00
#17 29.00 jar-turbojpeg:
#17 29.09 [echo] isSnapshot = true
#17 29.21
#17 29.21 init-title:
#17 29.21 [echo] ----------=========== turbojpeg ===========----------
#17 29.21
#17 29.21 init-timestamp:
#17 29.21
#17 29.21 init:
#17 29.21
#17 29.21 copy-resources:
#17 29.21
#17 29.21 compile:
#17 29.22 [resolver:resolve] Resolving artifacts
#17 29.22
#17 29.22 jar:
#17 29.22 [resolver:install] Using default POM (ome:turbojpeg:9.0.0-SNAPSHOT)
#17 29.23 [resolver:install] Installing /bio-formats-build/bioformats/components/forks/turbojpeg/pom.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.pom
#17 29.23 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/turbojpeg.jar to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar
#17 29.23 [resolver:install] Installing ome:turbojpeg:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 29.24 [resolver:install] Installing ome:turbojpeg/maven-metadata.xml to /home/build/.m2/repository/ome/turbojpeg/maven-metadata-local.xml
#17 29.24
#17 29.24 deps-formats-bsd:
#17 29.24
#17 29.24 jar-formats-bsd:
#17 29.32 [echo] isSnapshot = true
#17 29.44
#17 29.44 init-title:
#17 29.44 [echo] ----------=========== formats-bsd ===========----------
#17 29.44
#17 29.44 init-timestamp:
#17 29.44
#17 29.44 init:
#17 29.44
#17 29.44 copy-resources:
#17 29.44
#17 29.44 compile:
#17 29.65 [resolver:resolve] Resolving artifacts
#17 29.67
#17 29.67 formats-bsd.jar:
#17 29.69 [resolver:install] Using default POM (ome:formats-bsd:9.0.0-SNAPSHOT)
#17 29.70 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-bsd/pom.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.pom
#17 29.70 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-bsd.jar to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar
#17 29.70 [resolver:install] Installing ome:formats-bsd:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 29.70 [resolver:install] Installing ome:formats-bsd/maven-metadata.xml to /home/build/.m2/repository/ome/formats-bsd/maven-metadata-local.xml
#17 29.70
#17 29.70 deps-formats-gpl:
#17 29.70
#17 29.70 jar-formats-gpl:
#17 29.78 [echo] isSnapshot = true
#17 29.92
#17 29.92 init-title:
#17 29.92 [echo] ----------=========== formats-gpl ===========----------
#17 29.92
#17 29.92 init-timestamp:
#17 29.92
#17 29.92 init:
#17 29.92
#17 29.92 copy-resources:
#17 29.92
#17 29.92 compile:
#17 30.16 [resolver:resolve] Resolving artifacts
#17 30.18
#17 30.18 formats-gpl.jar:
#17 30.20 [resolver:install] Using default POM (ome:formats-gpl:9.0.0-SNAPSHOT)
#17 30.21 [resolver:install] Installing /bio-formats-build/bioformats/components/formats-gpl/pom.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.pom
#17 30.21 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/formats-gpl.jar to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar
#17 30.21 [resolver:install] Installing ome:formats-gpl:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 30.21 [resolver:install] Installing ome:formats-gpl/maven-metadata.xml to /home/build/.m2/repository/ome/formats-gpl/maven-metadata-local.xml
#17 30.21
#17 30.21 deps-bio-formats-plugins:
#17 30.21
#17 30.21 jar-bio-formats-plugins:
#17 30.29 [echo] isSnapshot = true
#17 30.42
#17 30.42 init-title:
#17 30.42 [echo] ----------=========== bio-formats_plugins ===========----------
#17 30.42
#17 30.42 init-timestamp:
#17 30.42
#17 30.42 init:
#17 30.42
#17 30.42 copy-resources:
#17 30.42
#17 30.42 compile:
#17 30.66 [resolver:resolve] Resolving artifacts
#17 30.67
#17 30.67 bio-formats-plugins.jar:
#17 30.68 [resolver:install] Using default POM (ome:bio-formats_plugins:9.0.0-SNAPSHOT)
#17 30.69 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-plugins/pom.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.pom
#17 30.69 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats_plugins.jar to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar
#17 30.69 [resolver:install] Installing ome:bio-formats_plugins:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 30.69 [resolver:install] Installing ome:bio-formats_plugins/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats_plugins/maven-metadata-local.xml
#17 30.69
#17 30.69 deps-bio-formats-tools:
#17 30.69
#17 30.69 jar-bio-formats-tools:
#17 30.77 [echo] isSnapshot = true
#17 30.90
#17 30.90 init-title:
#17 30.90 [echo] ----------=========== bio-formats-tools ===========----------
#17 30.90
#17 30.90 init-timestamp:
#17 30.90
#17 30.90 init:
#17 30.90
#17 30.90 copy-resources:
#17 30.90
#17 30.90 compile:
#17 31.14 [resolver:resolve] Resolving artifacts
#17 31.14
#17 31.14 bio-formats-tools.jar:
#17 31.15 [resolver:install] Using default POM (ome:bio-formats-tools:9.0.0-SNAPSHOT)
#17 31.15 [resolver:install] Installing /bio-formats-build/bioformats/components/bio-formats-tools/pom.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.pom
#17 31.15 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-tools.jar to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar
#17 31.15 [resolver:install] Installing ome:bio-formats-tools:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 31.16 [resolver:install] Installing ome:bio-formats-tools/maven-metadata.xml to /home/build/.m2/repository/ome/bio-formats-tools/maven-metadata-local.xml
#17 31.16
#17 31.16 deps-tests:
#17 31.16
#17 31.16 jar-tests:
#17 31.24 [echo] isSnapshot = true
#17 31.39
#17 31.39 init-title:
#17 31.39 [echo] ----------=========== bio-formats-testing-framework ===========----------
#17 31.39
#17 31.39 init-timestamp:
#17 31.39
#17 31.39 init:
#17 31.39
#17 31.39 copy-resources:
#17 31.39
#17 31.39 compile:
#17 31.64 [resolver:resolve] Resolving artifacts
#17 31.65
#17 31.65 tests.jar:
#17 31.65 [resolver:install] Using default POM (ome:test-suite:9.0.0-SNAPSHOT)
#17 31.66 [resolver:install] Installing /bio-formats-build/bioformats/components/test-suite/pom.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.pom
#17 31.66 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bio-formats-testing-framework.jar to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/test-suite-9.0.0-SNAPSHOT.jar
#17 31.66 [resolver:install] Installing ome:test-suite:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 31.66 [resolver:install] Installing ome:test-suite/maven-metadata.xml to /home/build/.m2/repository/ome/test-suite/maven-metadata-local.xml
#17 31.66
#17 31.66 jars:
#17 31.66
#17 31.66 tools:
#17 31.66 [echo] ----------=========== bioformats_package ===========----------
#17 31.74 [echo] isSnapshot = true
#17 31.86
#17 31.86 init-timestamp:
#17 31.86
#17 31.86 bundle:
#17 32.11 [resolver:resolve] Resolving artifacts
#17 32.12 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats_plugins/9.0.0-SNAPSHOT/bio-formats_plugins-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.14 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-common/6.3.0/ome-common-6.3.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.16 [unzip] Expanding: /home/build/.m2/repository/io/minio/minio/5.0.2/minio-5.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.18 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client-xml/1.20.0/google-http-client-xml-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.19 [unzip] Expanding: /home/build/.m2/repository/com/google/http-client/google-http-client/1.20.0/google-http-client-1.20.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.24 [unzip] Expanding: /home/build/.m2/repository/xpp3/xpp3/1.1.4c/xpp3-1.1.4c.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.25 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okhttp3/okhttp/3.7.0/okhttp-3.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.29 [unzip] Expanding: /home/build/.m2/repository/com/squareup/okio/okio/1.12.0/okio-1.12.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.31 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-databind/2.14.2/jackson-databind-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.54 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-core/2.14.2/jackson-core-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.58 [unzip] Expanding: /home/build/.m2/repository/com/fasterxml/jackson/core/jackson-annotations/2.14.2/jackson-annotations-2.14.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.60 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/kryo/5.4.0/kryo-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.64 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/reflectasm/1.11.9/reflectasm-1.11.9.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.65 [unzip] Expanding: /home/build/.m2/repository/org/objenesis/objenesis/3.3/objenesis-3.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.66 [unzip] Expanding: /home/build/.m2/repository/com/esotericsoftware/minlog/1.3.1/minlog-1.3.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.66 [unzip] Expanding: /home/build/.m2/repository/joda-time/joda-time/2.12.7/joda-time-2.12.7.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 32.80 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/guava/32.0.1-jre/guava-32.0.1-jre.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.18 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/failureaccess/1.0.1/failureaccess-1.0.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.19 [unzip] Expanding: /home/build/.m2/repository/com/google/guava/listenablefuture/9999.0-empty-to-avoid-conflict-with-guava/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.19 [unzip] Expanding: /home/build/.m2/repository/com/google/code/findbugs/jsr305/3.0.2/jsr305-3.0.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.19 [unzip] Expanding: /home/build/.m2/repository/org/checkerframework/checker-qual/3.33.0/checker-qual-3.33.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.25 [unzip] Expanding: /home/build/.m2/repository/com/google/errorprone/error_prone_annotations/2.18.0/error_prone_annotations-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.26 [unzip] Expanding: /home/build/.m2/repository/com/google/j2objc/j2objc-annotations/2.8/j2objc-annotations-2.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.26 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-xml/6.6.0/ome-xml-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.31 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/specification/6.6.0/specification-6.6.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.36 [unzip] Expanding: /home/build/.m2/repository/ome/formats-api/9.0.0-SNAPSHOT/formats-api-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.38 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-codecs/1.2.0/ome-codecs-1.2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.39 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-jai/0.1.5/ome-jai-0.1.5.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.50 [unzip] Expanding: /home/build/.m2/repository/io/airlift/aircompressor/2.0.3/aircompressor-2.0.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.52 [unzip] Expanding: /home/build/.m2/repository/ome/formats-bsd/9.0.0-SNAPSHOT/formats-bsd-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.59 [unzip] Expanding: /home/build/.m2/repository/ome/turbojpeg/9.0.0-SNAPSHOT/turbojpeg-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.62 [unzip] Expanding: /home/build/.m2/repository/org/scijava/native-lib-loader/2.4.0/native-lib-loader-2.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.63 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-lang3/3.18.0/commons-lang3-3.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.71 [unzip] Expanding: /home/build/.m2/repository/org/perf4j/perf4j/0.9.16/perf4j-0.9.16.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 33.73 [unzip] Expanding: /home/build/.m2/repository/cisd/jhdf5/19.04.1/jhdf5-19.04.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.11 [unzip] Expanding: /home/build/.m2/repository/cisd/base/18.09.0/base-18.09.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.13 [unzip] Expanding: /home/build/.m2/repository/commons-io/commons-io/2.6/commons-io-2.6.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.16 [unzip] Expanding: /home/build/.m2/repository/com/drewnoakes/metadata-extractor/2.18.0/metadata-extractor-2.18.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.23 [unzip] Expanding: /home/build/.m2/repository/com/adobe/xmp/xmpcore/6.1.11/xmpcore-6.1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.25 [unzip] Expanding: /home/build/.m2/repository/ome/jxrlib-all/0.2.4/jxrlib-all-0.2.4.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.26 [unzip] Expanding: /home/build/.m2/repository/org/json/json/20231013/json-20231013.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.27 [unzip] Expanding: /home/build/.m2/repository/xerces/xercesImpl/2.12.2/xercesImpl-2.12.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.45 [unzip] Expanding: /home/build/.m2/repository/xml-apis/xml-apis/1.4.01/xml-apis-1.4.01.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.50 [unzip] Expanding: /home/build/.m2/repository/org/yaml/snakeyaml/2.0/snakeyaml-2.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.55 [unzip] Expanding: /home/build/.m2/repository/ome/formats-gpl/9.0.0-SNAPSHOT/formats-gpl-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.63 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-mdbtools/5.4.0/ome-mdbtools-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.64 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/metakit/5.4.0/metakit-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.65 [unzip] Expanding: /home/build/.m2/repository/org/openmicroscopy/ome-poi/5.4.0/ome-poi-5.4.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.74 [unzip] Expanding: /home/build/.m2/repository/commons-logging/commons-logging/1.2/commons-logging-1.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 34.75 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/cdm-core/5.10.0/cdm-core-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.12 [unzip] Expanding: /home/build/.m2/repository/edu/ucar/httpservices/5.10.0/httpservices-5.10.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.13 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpclient/4.5.14/httpclient-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.22 [unzip] Expanding: /home/build/.m2/repository/commons-codec/commons-codec/1.11/commons-codec-1.11.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.26 [unzip] Expanding: /home/build/.m2/repository/org/apache/httpcomponents/httpmime/4.5.14/httpmime-4.5.14.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.27 [unzip] Expanding: /home/build/.m2/repository/org/apache/commons/commons-math3/3.6.1/commons-math3-3.6.1.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.55 [unzip] Expanding: /home/build/.m2/repository/com/google/re2j/re2j/1.8/re2j-1.8.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.56 [unzip] Expanding: /home/build/.m2/repository/org/xerial/sqlite-jdbc/3.49.1.0/sqlite-jdbc-3.49.1.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.92 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-forms/1.7.2/jgoodies-forms-1.7.2.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.94 [unzip] Expanding: /home/build/.m2/repository/com/jgoodies/jgoodies-common/1.7.0/jgoodies-common-1.7.0.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.95 [unzip] Expanding: /home/build/.m2/repository/org/slf4j/slf4j-api/2.0.18/slf4j-api-2.0.18.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.96 [unzip] Expanding: /home/build/.m2/repository/ome/bio-formats-tools/9.0.0-SNAPSHOT/bio-formats-tools-9.0.0-SNAPSHOT.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.96 [unzip] Expanding: /home/build/.m2/repository/xalan/serializer/2.7.3/serializer-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 35.98 [unzip] Expanding: /home/build/.m2/repository/xalan/xalan/2.7.3/xalan-2.7.3.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.30 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-core/1.5.37/logback-core-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.40 [unzip] Expanding: /home/build/.m2/repository/ch/qos/logback/logback-classic/1.5.37/logback-classic-1.5.37.jar into /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 36.77 [jar] Building jar: /bio-formats-build/bioformats/artifacts/bioformats_package.jar
#17 42.91 [delete] Deleting directory /bio-formats-build/bioformats/components/bundles/bioformats_package/build/unzip
#17 43.53 [resolver:install] Using default POM (ome:bioformats_package:9.0.0-SNAPSHOT)
#17 43.53 [resolver:install] Installing /bio-formats-build/bioformats/components/bundles/bioformats_package/pom.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.pom
#17 44.07 [resolver:install] Installing /bio-formats-build/bioformats/artifacts/bioformats_package.jar to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/bioformats_package-9.0.0-SNAPSHOT.jar
#17 44.11 [resolver:install] Installing ome:bioformats_package:9.0.0-SNAPSHOT/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/9.0.0-SNAPSHOT/maven-metadata-local.xml
#17 44.11 [resolver:install] Installing ome:bioformats_package/maven-metadata.xml to /home/build/.m2/repository/ome/bioformats_package/maven-metadata-local.xml
#17 44.12
#17 44.12 BUILD SUCCESSFUL
#17 44.12 Total time: 43 seconds
#17 DONE 44.5s
#18 [14/14] WORKDIR /bio-formats-build/bioformats/components/test-suite
#18 DONE 0.1s
#19 exporting to image
#19 exporting layers
#19 exporting layers 5.3s done
#19 writing image sha256:746a53969d8c6f8bdb7298db54c67aa7f5a7bf526bc426c0660bd1eee53b391c done
#19 naming to docker.io/snoopycrimecop/bioformats:merge_ci done
#19 DONE 5.4s
Finished: SUCCESS
