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Started by upstream project "BIOFORMATS-test-repo" build number 76 originally caused by: Started by upstream project "Trigger" build number 84 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins16365611658904822175.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_11538_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:58:29,159 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:58:29,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:58:29,161 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:29,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:58:29,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:58:29,162 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:58:29,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:58:29,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:29,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:58:29,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:58:29,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:58:29,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:58:29,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:58:29,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:58:29,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:58:29,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:58:29,498 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:58:29,498 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:58:29,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:58:29,499 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:58:29,499 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:58:29,500 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:58:29,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 337 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-27 01:58:29,511] [main] java.version = 1.8.0_342 [testng] 01:58:29,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:58:29,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:29,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-27_01-58-29.log] [testng] 01:58:29,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-27 01:58:29,601] [main] testng.directory = /data [testng] [2024-05-27 01:58:29,601] [main] testng.configDirectory = /config [testng] [2024-05-27 01:58:29,621] [main] testng.multiplier = 1.0 [testng] [2024-05-27 01:58:29,622] [main] testng.in-memory = false [testng] [2024-05-27 01:58:29,622] [main] testng.allow-missing = false [testng] [2024-05-27 01:58:29,622] [main] user.language = fr [testng] [2024-05-27 01:58:29,622] [main] user.country = FR [testng] [2024-05-27 01:58:29,622] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-27 02:05:20,444] [main] ---------------------------------------- [testng] [2024-05-27 02:05:20,444] [main] Total files: 7329 [testng] [2024-05-27 02:05:20,445] [main] Scan time: 410.822 s (56 ms/file) [testng] [2024-05-27 02:05:20,445] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-27 02:08:34,242] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:08:34,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:08:34,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-27_02-08-34.log] [testng] 02:08:34,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@598227cb - End of configuration. [testng] [2024-05-27 02:08:34,313] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:08:34,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:08:34,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-27_02-08-34.log] [testng] 02:08:34,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@263e4b78 - End of configuration. [testng] [2024-05-27 02:08:34,338] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:08:34,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:08:34,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-27_02-08-34.log] [testng] 02:08:34,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@581394ac - End of configuration. [testng] [2024-05-27 02:08:34,357] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:08:34,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:08:34,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-27_02-08-34.log] [testng] 02:08:34,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3964e796 - End of configuration. [testng] [2024-05-27 02:08:34,422] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:08:34,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:08:34,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-27_02-08-34.log] [testng] 02:08:34,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c31c384 - End of configuration. [testng] [2024-05-27 02:08:34,504] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:08:34,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:08:34,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-27_02-08-34.log] [testng] 02:08:34,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b34a820 - End of configuration. [testng] [2024-05-27 02:08:34,527] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:08:34,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:08:34,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-27_02-08-34.log] [testng] 02:08:34,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2679e6f9 - End of configuration. [testng] [2024-05-27 02:08:34,599] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:08:34,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:08:34,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-27_02-08-34.log] [testng] 02:08:34,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bd1cbaf - End of configuration. [testng] [2024-05-27 02:08:34,742] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:08:34,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:08:34,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-27_02-08-34.log] [testng] 02:08:34,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f4416ef - End of configuration. [testng] [2024-05-27 02:08:34,805] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:08:34,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:08:34,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-27_02-08-34.log] [testng] 02:08:34,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e62fd43 - End of configuration. [testng] [2024-05-27 02:08:34,840] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:08:34,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:08:34,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:34,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-27_02-08-34.log] [testng] 02:08:34,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e84be94 - End of configuration. [testng] [2024-05-27 02:08:35,438] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:08:35,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:08:35,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:08:35,438 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-27_02-08-35.log] [testng] 02:08:35,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a0a7fea - End of configuration. [testng] [2024-05-27 02:08:37,490] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-05-27 02:08:39,573] [pool-1-thread-8] Initializing /data/josh/2101to600astk.stk: [testng] [2024-05-27 02:08:49,022] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-05-27 02:08:49,223] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-05-27 02:08:49,550] [pool-1-thread-6] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-05-27 02:08:49,694] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-05-27 02:08:49,829] [pool-1-thread-5] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-05-27 02:08:49,952] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:08:50,117] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-05-27 02:08:50,440] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-05-27 02:08:50,697] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-05-27 02:08:51,835] [pool-1-thread-1] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-05-27 02:08:52,853] [pool-1-thread-6] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-05-27 02:08:53,230] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-05-27 02:08:53,275] [pool-1-thread-7] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-05-27 02:08:53,396] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-05-27 02:08:53,445] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-05-27 02:08:53,665] [pool-1-thread-6] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-05-27 02:08:53,988] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-05-27 02:08:54,139] [pool-1-thread-10] Initializing /data/steve/Experiment2.stk: [testng] [2024-05-27 02:08:54,212] [pool-1-thread-4] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-05-27 02:08:54,402] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-05-27 02:08:54,457] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-27 02:08:54,566] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-05-27 02:08:54,649] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-27 02:08:54,672] [pool-1-thread-9] Used files list does not include base file [testng] [2024-05-27 02:08:55,271] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-05-27 02:08:55,353] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-05-27 02:08:55,394] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-27 02:08:55,512] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-05-27 02:08:55,590] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-27 02:08:55,676] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2024-05-27 02:08:56,052] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-05-27 02:08:56,337] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-05-27 02:08:56,391] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-27 02:08:56,697] [pool-1-thread-11] Initializing /data/qa-16915/m-04.tif: [testng] [2024-05-27 02:08:57,171] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-05-27 02:08:57,366] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-27 02:08:57,650] [pool-1-thread-9] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-05-27 02:08:58,227] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-27 02:08:58,252] [pool-1-thread-10] Used files list does not include base file [testng] [2024-05-27 02:08:58,326] [pool-1-thread-4] Initializing /data/josh/2101to400astk.stk: [testng] [2024-05-27 02:08:59,973] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-05-27 02:09:00,024] [pool-1-thread-7] Used files list does not include base file [testng] [2024-05-27 02:09:00,109] [pool-1-thread-2] Initializing /data/ascb/mt aim.tif: [testng] [2024-05-27 02:09:00,155] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-05-27 02:09:00,523] [pool-1-thread-3] Initializing /data/qa-16915/m-02.tif: [testng] [2024-05-27 02:09:00,775] [pool-1-thread-6] Initializing /data/samples/zserSixteen.stk: [testng] [2024-05-27 02:09:01,077] [pool-1-thread-5] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-27 02:09:01,204] [pool-1-thread-6] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-05-27 02:09:01,423] [pool-1-thread-2] Initializing 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[2024-05-27 02:09:08,515] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-27 02:09:08,977] [pool-1-thread-5] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-05-27 02:09:09,564] [pool-1-thread-7] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-05-27 02:09:09,718] [pool-1-thread-12] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-05-27 02:09:09,777] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-05-27 02:09:10,410] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-05-27 02:09:10,960] [pool-1-thread-12] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-05-27 02:09:11,044] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-05-27 02:09:11,949] [pool-1-thread-3] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-05-27 02:09:15,280] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-05-27 02:09:15,304] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-27 02:09:15,386] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:09:15,713] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:09:16,277] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-05-27 02:09:16,620] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-05-27 02:09:16,695] [pool-1-thread-5] Used files list does not include base file [testng] [2024-05-27 02:09:16,753] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-05-27 02:09:17,362] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-05-27 02:09:17,902] [pool-1-thread-11] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-05-27 02:09:18,036] [pool-1-thread-4] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-05-27 02:09:18,131] [pool-1-thread-3] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-05-27 02:09:18,372] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-05-27 02:09:20,995] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:09:21,399] [pool-1-thread-11] Initializing /data/josh/2101to600e.stk: [testng] [2024-05-27 02:09:22,185] [pool-1-thread-1] Initializing /data/samples/zseries.stk: [testng] [2024-05-27 02:09:22,290] [pool-1-thread-4] Initializing 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[pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-05-27 02:09:25,712] [pool-1-thread-1] Initializing /data/qa-16915/m-01.tif: [testng] [2024-05-27 02:09:26,048] [pool-1-thread-12] Initializing /data/alex/Selected FITC.stk: [testng] [2024-05-27 02:09:26,812] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-05-27 02:09:26,897] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-05-27 02:09:27,262] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-05-27 02:09:27,343] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-27 02:09:27,396] [pool-1-thread-2] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-05-27 02:09:28,122] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-05-27 02:09:28,498] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:09:28,555] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-05-27 02:09:29,051] [pool-1-thread-3] Initializing /data/ascb/golgi marker.tif: [testng] [2024-05-27 02:09:29,232] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-05-27 02:09:29,616] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-05-27 02:09:30,185] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-05-27 02:09:30,256] [pool-1-thread-3] Used files list does not include base file [testng] [2024-05-27 02:09:30,400] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-05-27 02:09:30,478] [pool-1-thread-5] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-05-27 02:09:30,532] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-05-27 02:09:31,112] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-05-27 02:09:31,830] [pool-1-thread-9] Initializing /data/aaron/metamorph.stk: [testng] [2024-05-27 02:09:31,934] [pool-1-thread-11] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-05-27 02:09:31,981] [pool-1-thread-1] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-05-27 02:09:32,216] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-05-27 02:09:32,514] [pool-1-thread-12] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-05-27 02:09:33,051] [pool-1-thread-3] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-05-27 02:09:47,780] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:09:47,856] [pool-1-thread-2] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-05-27 02:09:49,688] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-05-27 02:09:49,783] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-05-27 02:09:51,054] [pool-1-thread-12] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-05-27 02:09:51,207] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-05-27 02:09:51,862] [pool-1-thread-3] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-05-27 02:09:51,916] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-05-27 02:09:52,178] [pool-1-thread-1] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-05-27 02:09:52,512] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-05-27 02:09:52,776] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-05-27 02:09:52,826] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-27 02:09:52,835] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-05-27 02:09:53,136] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-05-27 02:09:53,791] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-05-27 02:09:53,844] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-05-27 02:09:54,364] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-05-27 02:09:55,751] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-05-27 02:09:55,775] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-27 02:09:55,776] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-05-27 02:09:55,823] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-27 02:09:56,246] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-05-27 02:09:56,330] [pool-1-thread-4] Used files list does not include base file [testng] [2024-05-27 02:09:56,395] [pool-1-thread-9] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-05-27 02:09:57,180] [pool-1-thread-1] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-05-27 02:09:57,828] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-05-27 02:09:58,249] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-05-27 02:09:58,556] [pool-1-thread-9] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-05-27 02:09:59,346] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-27 02:09:59,413] [pool-1-thread-8] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-05-27 02:10:00,195] [pool-1-thread-4] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-05-27 02:10:00,519] [pool-1-thread-1] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-05-27 02:10:00,590] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-05-27 02:10:00,643] [pool-1-thread-6] Used files list does not include base file [testng] [2024-05-27 02:10:00,650] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-05-27 02:10:01,224] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-05-27 02:10:01,862] [pool-1-thread-1] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-05-27 02:10:04,162] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-05-27 02:10:05,119] [pool-1-thread-5] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-05-27 02:10:05,355] [pool-1-thread-5] Initializing /data/jerome/deconv.STK: [testng] [2024-05-27 02:10:05,970] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-05-27 02:10:06,261] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-05-27 02:10:06,451] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-05-27 02:10:06,584] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-05-27 02:10:07,055] [pool-1-thread-6] Initializing /data/jae/RGB_s34.tif: [testng] [2024-05-27 02:10:07,332] [pool-1-thread-5] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-05-27 02:10:07,707] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-05-27 02:10:07,787] [pool-1-thread-8] Used files list does not include base file [testng] [2024-05-27 02:10:08,243] [pool-1-thread-3] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-05-27 02:10:08,616] [pool-1-thread-9] Initializing /data/steve/Experiment2.tif: [testng] [2024-05-27 02:10:09,150] [pool-1-thread-6] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-05-27 02:10:09,355] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:10:09,827] [pool-1-thread-9] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-05-27 02:10:10,942] [pool-1-thread-6] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-05-27 02:10:11,626] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-05-27 02:10:12,450] [pool-1-thread-8] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-05-27 02:10:12,659] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:10:12,786] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-05-27 02:10:13,088] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-05-27 02:10:13,166] [pool-1-thread-5] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-05-27 02:10:13,647] [pool-1-thread-8] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-05-27 02:10:13,904] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-05-27 02:10:13,946] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-05-27 02:10:14,322] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-05-27 02:10:14,461] [pool-1-thread-8] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-05-27 02:10:14,537] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-05-27 02:10:14,697] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-05-27 02:10:15,015] [pool-1-thread-5] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-05-27 02:10:15,217] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-05-27 02:10:15,240] [pool-1-thread-8] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 37 seconds Finished: SUCCESS