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Started by upstream project "BIOFORMATS-test-repo" build number 76 originally caused by: Started by upstream project "Trigger" build number 84 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins11435272983103532458.sh + '[' avi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_11539_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:02:59,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:02:59,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:02:59,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:59,225 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:59,225 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:02:59,225 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:02:59,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:02:59,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:59,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:59,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:02:59,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:02:59,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:02:59,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:59,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:02:59,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:02:59,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:02:59,582 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:02:59,583 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:02:59,583 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:02:59,583 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:02:59,583 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:02:59,584 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:02:59,585 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 359 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-27 02:02:59,597] [main] java.version = 1.8.0_342 [testng] 02:02:59,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:02:59,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:59,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-27_02-02-59.log] [testng] 02:02:59,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-27 02:02:59,702] [main] testng.directory = /data [testng] [2024-05-27 02:02:59,702] [main] testng.configDirectory = /config [testng] [2024-05-27 02:02:59,716] [main] testng.multiplier = 1.0 [testng] [2024-05-27 02:02:59,717] [main] testng.in-memory = false [testng] [2024-05-27 02:02:59,717] [main] testng.allow-missing = false [testng] [2024-05-27 02:02:59,717] [main] user.language = fr [testng] [2024-05-27 02:02:59,717] [main] user.country = FR [testng] [2024-05-27 02:02:59,717] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-27 02:03:01,067] [main] ---------------------------------------- [testng] [2024-05-27 02:03:01,067] [main] Total files: 40 [testng] [2024-05-27 02:03:01,067] [main] Scan time: 1.35 s (33 ms/file) [testng] [2024-05-27 02:03:01,067] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-27 02:07:17,488] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi: [testng] 02:07:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:07:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-27_02-07-17.log] [testng] 02:07:17,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e9276dd - End of configuration. [testng] [2024-05-27 02:07:17,539] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 02:07:17,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:07:17,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-27_02-07-17.log] [testng] 02:07:17,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f1986aa - End of configuration. [testng] [2024-05-27 02:07:17,573] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 02:07:17,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:07:17,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-27_02-07-17.log] [testng] 02:07:17,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e7a5734 - End of configuration. [testng] [2024-05-27 02:07:17,607] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 02:07:17,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:07:17,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-27_02-07-17.log] [testng] 02:07:17,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66640e31 - End of configuration. [testng] [2024-05-27 02:07:17,641] [pool-1-thread-9] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:07:17,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:07:17,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-27_02-07-17.log] [testng] 02:07:17,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ac48033 - End of configuration. [testng] [2024-05-27 02:07:17,657] [pool-1-thread-8] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:07:17,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:07:17,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-27_02-07-17.log] [testng] 02:07:17,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ad2468 - End of configuration. [testng] [2024-05-27 02:07:17,738] [pool-1-thread-7] Initializing /data/william/worm.avi: [testng] 02:07:17,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:07:17,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-27_02-07-17.log] [testng] 02:07:17,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7574fa6f - End of configuration. [testng] [2024-05-27 02:07:17,752] [pool-1-thread-6] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 02:07:17,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:07:17,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-27_02-07-17.log] [testng] 02:07:17,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47d42352 - End of configuration. [testng] [2024-05-27 02:07:17,812] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] 02:07:17,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:07:17,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-27_02-07-17.log] [testng] 02:07:17,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3642d3e7 - End of configuration. [testng] [2024-05-27 02:07:17,842] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 02:07:17,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:07:17,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-27_02-07-17.log] [testng] 02:07:17,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c7052db - End of configuration. [testng] [2024-05-27 02:07:17,884] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 02:07:17,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:07:17,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:17,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-27_02-07-17.log] [testng] 02:07:17,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc5b7e0 - End of configuration. [testng] [2024-05-27 02:07:46,438] [pool-1-thread-2] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 02:07:46,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:07:46,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:07:46,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-27_02-07-46.log] [testng] 02:07:46,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e539a6 - End of configuration. [testng] [2024-05-27 02:07:47,646] [pool-1-thread-2] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-05-27 02:07:47,689] [pool-1-thread-10] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-05-27 02:07:47,746] [pool-1-thread-7] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-05-27 02:07:48,105] [pool-1-thread-9] Initializing /data/kurt/40x_6um.avi: [testng] [2024-05-27 02:07:48,146] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-05-27 02:07:48,192] [pool-1-thread-4] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-05-27 02:07:48,605] [pool-1-thread-12] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-05-27 02:07:48,652] [pool-1-thread-5] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-05-27 02:07:49,575] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-05-27 02:07:49,718] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-05-27 02:07:49,747] [pool-1-thread-2] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-05-27 02:07:49,758] [pool-1-thread-8] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-05-27 02:07:49,812] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-05-27 02:07:49,910] [pool-1-thread-4] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-05-27 02:07:50,113] [pool-1-thread-1] Initializing /data/chris/APZ04_009.avi: [testng] [2024-05-27 02:07:57,357] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-05-27 02:07:57,428] [pool-1-thread-10] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-05-27 02:07:57,820] [pool-1-thread-6] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-05-27 02:07:58,134] [pool-1-thread-12] Initializing /data/kurt/63x_6um.avi: [testng] [2024-05-27 02:07:58,238] [pool-1-thread-8] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-05-27 02:07:58,323] [pool-1-thread-2] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-05-27 02:07:58,347] [pool-1-thread-9] Initializing /data/ascb/TIRF.avi: [testng] [2024-05-27 02:07:58,754] [pool-1-thread-10] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-05-27 02:07:58,963] [pool-1-thread-11] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-05-27 02:07:59,180] [pool-1-thread-7] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-05-27 02:07:59,444] [pool-1-thread-7] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 18 seconds Finished: SUCCESS