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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15177586581464057429.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12944_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:22:14,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:14,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:22:14,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:14,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:14,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:14,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:14,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:14,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:14,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:14,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:14,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:14,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:14,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:14,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:14,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:14,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:14,957 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:14,957 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:14,957 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:14,958 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:14,958 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:22:14,960 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:22:14,960 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 352 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 01:22:14,976] [main] java.version = 1.8.0_342 [testng] 01:22:14,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:14,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:15,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_01-22-15.log] [testng] 01:22:15,044 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 01:22:15,047] [main] testng.directory = /data [testng] [2024-06-07 01:22:15,047] [main] testng.configDirectory = /config [testng] [2024-06-07 01:22:15,065] [main] testng.multiplier = 1.0 [testng] [2024-06-07 01:22:15,065] [main] testng.in-memory = false [testng] [2024-06-07 01:22:15,065] [main] testng.allow-missing = false [testng] [2024-06-07 01:22:15,065] [main] user.language = en [testng] [2024-06-07 01:22:15,066] [main] user.country = ${user.country} [testng] [2024-06-07 01:22:15,066] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 01:22:15,586] [main] ---------------------------------------- [testng] [2024-06-07 01:22:15,586] [main] Total files: 21 [testng] [2024-06-07 01:22:15,586] [main] Scan time: 0.52 s (24 ms/file) [testng] [2024-06-07 01:22:15,586] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 01:22:17,069] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 01:22:17,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:17,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_01-22-17.log] [testng] 01:22:17,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35e1bf8c - End of configuration. [testng] [2024-06-07 01:22:17,125] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 01:22:17,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:17,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_01-22-17.log] [testng] 01:22:17,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d8cdc1e - End of configuration. [testng] [2024-06-07 01:22:17,147] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 01:22:17,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:17,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_01-22-17.log] [testng] 01:22:17,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3bb7ee - End of configuration. [testng] [2024-06-07 01:22:17,164] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 01:22:17,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:17,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_01-22-17.log] [testng] 01:22:17,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b4c15c9 - End of configuration. [testng] [2024-06-07 01:22:17,183] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:22:17,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:17,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_01-22-17.log] [testng] 01:22:17,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a246496 - End of configuration. [testng] [2024-06-07 01:22:17,201] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 01:22:17,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:17,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_01-22-17.log] [testng] 01:22:17,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143ae375 - End of configuration. [testng] [2024-06-07 01:22:17,221] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 01:22:17,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:17,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_01-22-17.log] [testng] 01:22:17,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d96c356 - End of configuration. [testng] [2024-06-07 01:22:17,241] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 01:22:17,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:17,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_01-22-17.log] [testng] 01:22:17,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f439355 - End of configuration. [testng] [2024-06-07 01:22:17,258] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:22:17,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:17,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_01-22-17.log] [testng] 01:22:17,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b7af3b5 - End of configuration. [testng] [2024-06-07 01:22:17,277] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:22:17,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:17,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_01-22-17.log] [testng] 01:22:17,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a0e4b8 - End of configuration. [testng] [2024-06-07 01:22:17,292] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 01:22:17,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:17,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_01-22-17.log] [testng] 01:22:17,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@689e84a8 - End of configuration. [testng] [2024-06-07 01:22:17,309] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:22:17,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:17,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_01-22-17.log] [testng] 01:22:17,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191f95f - End of configuration. [testng] [2024-06-07 01:22:19,915] [pool-1-thread-5] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-06-07 01:22:19,929] [pool-1-thread-2] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-06-07 01:22:19,951] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-06-07 01:22:19,966] [pool-1-thread-6] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-06-07 01:22:19,983] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-06-07 01:22:20,007] [pool-1-thread-3] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-06-07 01:22:20,026] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-06-07 01:22:20,046] [pool-1-thread-7] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS