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Started by upstream project "BIOFORMATS-test-repo" build number 85 originally caused by: Started by upstream project "Trigger" build number 96 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins6193586029920176184.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_12945_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:22:23,561 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:23,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:22:23,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:23,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:23,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:23,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:23,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:23,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:23,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:23,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:23,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:23,566 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:23,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:23,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:23,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:23,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:23,862 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:23,863 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:23,863 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:23,863 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:23,863 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:22:23,864 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:22:23,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 298 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-07 01:22:23,875] [main] java.version = 1.8.0_342 [testng] 01:22:23,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:23,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:23,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-07_01-22-23.log] [testng] 01:22:23,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-07 01:22:23,931] [main] testng.directory = /data [testng] [2024-06-07 01:22:23,932] [main] testng.configDirectory = /config [testng] [2024-06-07 01:22:23,946] [main] testng.multiplier = 1.0 [testng] [2024-06-07 01:22:23,946] [main] testng.in-memory = false [testng] [2024-06-07 01:22:23,947] [main] testng.allow-missing = false [testng] [2024-06-07 01:22:23,947] [main] user.language = en [testng] [2024-06-07 01:22:23,947] [main] user.country = ${user.country} [testng] [2024-06-07 01:22:23,947] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-07 01:22:24,941] [main] ---------------------------------------- [testng] [2024-06-07 01:22:24,942] [main] Total files: 21 [testng] [2024-06-07 01:22:24,942] [main] Scan time: 0.994 s (47 ms/file) [testng] [2024-06-07 01:22:24,942] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-07 01:22:27,193] [pool-1-thread-1] Initializing /data/stefan/001_q01.txt: [testng] 01:22:27,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:27,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-07_01-22-27.log] [testng] 01:22:27,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21b433ca - End of configuration. [testng] [2024-06-07 01:22:27,230] [pool-1-thread-12] Initializing /data/stefan/001_q12.txt: [testng] 01:22:27,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:27,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-07_01-22-27.log] [testng] 01:22:27,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@660a755f - End of configuration. [testng] [2024-06-07 01:22:27,290] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] 01:22:27,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:27,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-07_01-22-27.log] [testng] 01:22:27,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d006b9a - End of configuration. [testng] [2024-06-07 01:22:27,318] [pool-1-thread-10] Initializing /data/stefan/001_q08.txt: [testng] 01:22:27,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:27,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-07_01-22-27.log] [testng] 01:22:27,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22da2784 - End of configuration. [testng] [2024-06-07 01:22:27,381] [pool-1-thread-9] Initializing /data/stefan/001_q14.txt: [testng] 01:22:27,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:27,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-07_01-22-27.log] [testng] 01:22:27,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@550e00 - End of configuration. [testng] [2024-06-07 01:22:27,419] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] 01:22:27,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:27,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-07_01-22-27.log] [testng] 01:22:27,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53e7fb7c - End of configuration. [testng] [2024-06-07 01:22:27,446] [pool-1-thread-7] Initializing /data/stefan/001_q16.txt: [testng] 01:22:27,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:27,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-07_01-22-27.log] [testng] 01:22:27,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bcf68a4 - End of configuration. [testng] [2024-06-07 01:22:27,484] [pool-1-thread-6] Initializing /data/stefan/001_q11.txt: [testng] 01:22:27,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:27,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-07_01-22-27.log] [testng] 01:22:27,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1870cf6 - End of configuration. [testng] [2024-06-07 01:22:27,543] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt: [testng] 01:22:27,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:27,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-07_01-22-27.log] [testng] 01:22:27,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bce9e9 - End of configuration. [testng] [2024-06-07 01:22:27,567] [pool-1-thread-4] Initializing /data/stefan/001_q10.txt: [testng] 01:22:27,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:27,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-07_01-22-27.log] [testng] 01:22:27,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f6a9429 - End of configuration. [testng] [2024-06-07 01:22:27,626] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt: [testng] 01:22:27,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:27,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-07_01-22-27.log] [testng] 01:22:27,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a4f1d3d - End of configuration. [testng] [2024-06-07 01:22:27,697] [pool-1-thread-2] Initializing /data/stefan/001_q05.txt: [testng] 01:22:27,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:27,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:27,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-07_01-22-27.log] [testng] 01:22:27,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bc9bce2 - End of configuration. [testng] [2024-06-07 01:22:29,839] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt: [testng] [2024-06-07 01:22:29,897] [pool-1-thread-1] Initializing /data/stefan/001_q13.txt: [testng] [2024-06-07 01:22:29,943] [pool-1-thread-8] Initializing /data/stefan/001_q03.txt: [testng] [2024-06-07 01:22:29,985] [pool-1-thread-3] Initializing /data/stefan/001_q18.txt: [testng] [2024-06-07 01:22:30,080] [pool-1-thread-10] Initializing /data/stefan/001_q17.txt: [testng] [2024-06-07 01:22:30,169] [pool-1-thread-4] Initializing /data/stefan/001_q09.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS