Started by upstream project "BIOFORMATS-test-repo" build number 93 originally caused by: Started by upstream project "Trigger" build number 104 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14446819660417392405.sh + '[' lim = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_14256_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:21:32,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:32,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:32,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:32,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:32,562 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:32,563 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:32,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:32,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:32,564 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 01:21:32,565 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 01:21:32,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 508 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-15 01:21:32,587] [main] java.version = 11.0.16 [testng] 01:21:32,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:32,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:32,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-15_01-21-32.log] [testng] 01:21:32,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-06-15 01:21:32,680] [main] testng.directory = /data [testng] [2024-06-15 01:21:32,680] [main] testng.configDirectory = /config [testng] [2024-06-15 01:21:32,711] [main] testng.multiplier = 1.0 [testng] [2024-06-15 01:21:32,714] [main] testng.in-memory = false [testng] [2024-06-15 01:21:32,715] [main] testng.allow-missing = false [testng] [2024-06-15 01:21:32,715] [main] user.language = en [testng] [2024-06-15 01:21:32,715] [main] user.country = ${user.country} [testng] [2024-06-15 01:21:32,715] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-15 01:21:33,260] [main] ---------------------------------------- [testng] [2024-06-15 01:21:33,261] [main] Total files: 21 [testng] [2024-06-15 01:21:33,261] [main] Scan time: 0.544 s (25 ms/file) [testng] [2024-06-15 01:21:33,261] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-15 01:21:34,896] [pool-1-thread-1] Initializing /data/venu/Kontrolle0010.lim: [testng] 01:21:34,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:34,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:34,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-15_01-21-34.log] [testng] 01:21:34,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@712766b1 - End of configuration. [testng] [2024-06-15 01:21:34,959] [pool-1-thread-12] Initializing /data/venu/Kontrolle0018.lim: [testng] 01:21:34,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:34,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:34,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-15_01-21-34.log] [testng] 01:21:34,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ea2ac - End of configuration. [testng] [2024-06-15 01:21:34,983] [pool-1-thread-11] Initializing /data/venu/Kontrolle0008.lim: [testng] 01:21:34,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:34,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:34,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-15_01-21-34.log] [testng] 01:21:34,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f182c70 - End of configuration. [testng] [2024-06-15 01:21:35,011] [pool-1-thread-10] Initializing /data/venu/Kontrolle0021.lim: [testng] 01:21:35,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:35,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-15_01-21-35.log] [testng] 01:21:35,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e94be3b - End of configuration. [testng] [2024-06-15 01:21:35,035] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 01:21:35,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:35,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-15_01-21-35.log] [testng] 01:21:35,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57c2aff5 - End of configuration. [testng] [2024-06-15 01:21:35,052] [pool-1-thread-8] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:21:35,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:35,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-15_01-21-35.log] [testng] 01:21:35,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fc0cc35 - End of configuration. [testng] [2024-06-15 01:21:35,071] [pool-1-thread-7] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:21:35,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:35,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-15_01-21-35.log] [testng] 01:21:35,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec5bb88 - End of configuration. [testng] [2024-06-15 01:21:35,091] [pool-1-thread-6] Initializing /data/venu/Kontrolle0004.lim: [testng] 01:21:35,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:35,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-15_01-21-35.log] [testng] 01:21:35,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55acabcf - End of configuration. [testng] [2024-06-15 01:21:35,114] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim: [testng] 01:21:35,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:35,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-15_01-21-35.log] [testng] 01:21:35,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40fca5fe - End of configuration. [testng] [2024-06-15 01:21:35,139] [pool-1-thread-4] Initializing /data/venu/Kontrolle0015.lim: [testng] 01:21:35,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:35,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-15_01-21-35.log] [testng] 01:21:35,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62eead63 - End of configuration. [testng] [2024-06-15 01:21:35,172] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 01:21:35,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:35,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-15_01-21-35.log] [testng] 01:21:35,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f67eeb3 - End of configuration. [testng] [2024-06-15 01:21:35,196] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim: [testng] 01:21:35,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:35,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-15_01-21-35.log] [testng] 01:21:35,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1532cc28 - End of configuration. [testng] [2024-06-15 01:21:37,826] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] [2024-06-15 01:21:37,839] [pool-1-thread-6] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-06-15 01:21:37,852] [pool-1-thread-9] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-06-15 01:21:37,866] [pool-1-thread-11] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-06-15 01:21:37,881] [pool-1-thread-8] Initializing /data/venu/Kontrolle0009.lim: [testng] [2024-06-15 01:21:37,892] [pool-1-thread-12] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-06-15 01:21:37,903] [pool-1-thread-4] Initializing /data/venu/Kontrolle0003.lim: [testng] [2024-06-15 01:21:37,916] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS