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Started by upstream project "BIOFORMATS-test-repo" build number 102 originally caused by: Started by upstream project "Trigger" build number 113 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14172855641931870181.sh + '[' lim = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_15732_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:20:52,522 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:52,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:20:52,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:52,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:52,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:52,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:52,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:52,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:52,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:52,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:52,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:52,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:52,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:52,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:52,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:52,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:52,824 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:52,825 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:52,825 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:52,825 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:52,826 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:20:52,827 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:20:52,827 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 299 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-24 01:20:52,839] [main] java.version = 1.8.0_342 [testng] 01:20:52,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:52,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:52,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-24_01-20-52.log] [testng] 01:20:52,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-06-24 01:20:52,892] [main] testng.directory = /data [testng] [2024-06-24 01:20:52,893] [main] testng.configDirectory = /config [testng] [2024-06-24 01:20:52,905] [main] testng.multiplier = 1.0 [testng] [2024-06-24 01:20:52,905] [main] testng.in-memory = false [testng] [2024-06-24 01:20:52,905] [main] testng.allow-missing = false [testng] [2024-06-24 01:20:52,905] [main] user.language = fr [testng] [2024-06-24 01:20:52,905] [main] user.country = FR [testng] [2024-06-24 01:20:52,905] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-06-24 01:20:53,322] [main] ---------------------------------------- [testng] [2024-06-24 01:20:53,323] [main] Total files: 21 [testng] [2024-06-24 01:20:53,323] [main] Scan time: 0.417 s (19 ms/file) [testng] [2024-06-24 01:20:53,323] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-24 01:20:54,648] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 01:20:54,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:20:54,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-24_01-20-54.log] [testng] 01:20:54,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@539ff220 - End of configuration. [testng] [2024-06-24 01:20:54,721] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 01:20:54,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:20:54,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-24_01-20-54.log] [testng] 01:20:54,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d4e78c3 - End of configuration. [testng] [2024-06-24 01:20:54,756] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 01:20:54,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:20:54,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-24_01-20-54.log] [testng] 01:20:54,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c71cf63 - End of configuration. [testng] [2024-06-24 01:20:54,771] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 01:20:54,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:20:54,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-24_01-20-54.log] [testng] 01:20:54,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b9a39ef - End of configuration. [testng] [2024-06-24 01:20:54,788] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:20:54,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:20:54,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-24_01-20-54.log] [testng] 01:20:54,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26a0f652 - End of configuration. [testng] [2024-06-24 01:20:54,803] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 01:20:54,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:20:54,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-24_01-20-54.log] [testng] 01:20:54,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33b6428e - End of configuration. [testng] [2024-06-24 01:20:54,819] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 01:20:54,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:20:54,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-24_01-20-54.log] [testng] 01:20:54,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3559699d - End of configuration. [testng] [2024-06-24 01:20:54,836] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 01:20:54,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:20:54,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-24_01-20-54.log] [testng] 01:20:54,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78dd0626 - End of configuration. [testng] [2024-06-24 01:20:54,849] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:20:54,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:20:54,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-24_01-20-54.log] [testng] 01:20:54,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b4c15c9 - End of configuration. [testng] [2024-06-24 01:20:54,862] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:20:54,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:20:54,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-24_01-20-54.log] [testng] 01:20:54,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a246496 - End of configuration. [testng] [2024-06-24 01:20:54,877] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 01:20:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:20:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-24_01-20-54.log] [testng] 01:20:54,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51386736 - End of configuration. [testng] [2024-06-24 01:20:54,893] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:20:54,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:20:54,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:54,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-24_01-20-54.log] [testng] 01:20:54,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d96c356 - End of configuration. [testng] [2024-06-24 01:20:57,540] [pool-1-thread-12] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-06-24 01:20:57,551] [pool-1-thread-9] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-06-24 01:20:57,561] [pool-1-thread-1] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-06-24 01:20:57,573] [pool-1-thread-8] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-06-24 01:20:57,585] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-06-24 01:20:57,599] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-06-24 01:20:57,611] [pool-1-thread-6] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-06-24 01:20:57,623] [pool-1-thread-10] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 seconds Finished: SUCCESS