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Started by upstream project "BIOFORMATS-test-repo" build number 104 originally caused by: Started by upstream project "Trigger" build number 116 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14626406773596829615.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_16057_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:56,247 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:56,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:21:56,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:56,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:56,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:56,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:56,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:56,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:56,254 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:56,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:56,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:56,255 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:56,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:56,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:56,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:56,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:56,542 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:56,542 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:56,543 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:56,544 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:56,544 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:21:56,545 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:21:56,545 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-06-27 01:21:56,559] [main] java.version = 21 [testng] 01:21:56,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:56,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:56,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-27_01-21-56.log] [testng] 01:21:56,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-06-27 01:21:56,641] [main] testng.directory = /data [testng] [2024-06-27 01:21:56,641] [main] testng.configDirectory = /config [testng] [2024-06-27 01:21:56,656] [main] testng.multiplier = 1.0 [testng] [2024-06-27 01:21:56,657] [main] testng.in-memory = false [testng] [2024-06-27 01:21:56,658] [main] testng.allow-missing = false [testng] [2024-06-27 01:21:56,658] [main] user.language = en [testng] [2024-06-27 01:21:56,658] [main] user.country = ${user.country} [testng] [2024-06-27 01:21:56,658] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-06-27 01:22:11,313] [main] ---------------------------------------- [testng] [2024-06-27 01:22:11,313] [main] Total files: 4424 [testng] [2024-06-27 01:22:11,313] [main] Scan time: 14.655 s (3 ms/file) [testng] [2024-06-27 01:22:11,314] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-06-27 01:23:59,593] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] 01:23:59,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:59,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-27_01-23-59.log] [testng] 01:23:59,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f1461f0 - End of configuration. [testng] [2024-06-27 01:23:59,626] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] 01:23:59,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:59,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-27_01-23-59.log] [testng] 01:23:59,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fde55a8 - End of configuration. [testng] [2024-06-27 01:23:59,654] [pool-1-thread-11] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] 01:23:59,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:59,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-27_01-23-59.log] [testng] 01:23:59,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126e8b02 - End of configuration. [testng] [2024-06-27 01:23:59,673] [pool-1-thread-10] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] 01:23:59,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:59,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-27_01-23-59.log] [testng] 01:23:59,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e5733a1 - End of configuration. [testng] [2024-06-27 01:23:59,716] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] 01:23:59,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:59,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-27_01-23-59.log] [testng] 01:23:59,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62b3f11a - End of configuration. [testng] [2024-06-27 01:23:59,739] [pool-1-thread-8] Initializing /data/misc/mri.eps: [testng] 01:23:59,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:59,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-27_01-23-59.log] [testng] 01:23:59,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24088d66 - End of configuration. [testng] [2024-06-27 01:23:59,753] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] 01:23:59,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:59,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-27_01-23-59.log] [testng] 01:23:59,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@301ed043 - End of configuration. [testng] [2024-06-27 01:23:59,793] [pool-1-thread-6] Initializing /data/josiah/cell-Z27.C1.tiff: [testng] 01:23:59,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:59,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-27_01-23-59.log] [testng] 01:23:59,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c16dba9 - End of configuration. [testng] [2024-06-27 01:23:59,832] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] 01:23:59,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:59,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-27_01-23-59.log] [testng] 01:23:59,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a13239d - End of configuration. [testng] [2024-06-27 01:23:59,856] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] 01:23:59,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:59,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-27_01-23-59.log] [testng] 01:23:59,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4053287e - End of configuration. [testng] [2024-06-27 01:23:59,882] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z036.tif: [testng] 01:23:59,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:59,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-27_01-23-59.log] [testng] 01:23:59,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437f807a - End of configuration. [testng] [2024-06-27 01:23:59,904] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] 01:23:59,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:59,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:59,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-27_01-23-59.log] [testng] 01:23:59,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60334e7 - End of configuration. [testng] [2024-06-27 01:24:01,592] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2024-06-27 01:24:01,639] [pool-1-thread-6] Initializing /data/curtis/map/jumps-over: [testng] [2024-06-27 01:24:01,660] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z062.tif: [testng] [2024-06-27 01:24:01,680] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z015.tif: [testng] [2024-06-27 01:24:01,702] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-06-27 01:24:01,724] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-06-27 01:24:01,779] [pool-1-thread-4] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-06-27 01:24:01,805] [pool-1-thread-11] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-06-27 01:24:01,829] [pool-1-thread-8] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-06-27 01:24:03,880] [pool-1-thread-2] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-06-27 01:24:03,978] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0253.TIF: [testng] [2024-06-27 01:24:04,754] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-06-27 01:24:04,807] [pool-1-thread-3] Initializing /data/damian/06m.tiff: [testng] [2024-06-27 01:24:04,937] [pool-1-thread-12] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-06-27 01:24:05,254] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-06-27 01:24:05,309] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-06-27 01:24:05,342] [pool-1-thread-11] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-06-27 01:24:05,708] [pool-1-thread-6] Initializing /data/damian/21m.tiff: [testng] [2024-06-27 01:24:05,739] [pool-1-thread-5] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-06-27 01:24:05,793] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-06-27 01:24:05,820] [pool-1-thread-3] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-06-27 01:24:06,080] [pool-1-thread-1] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-06-27 01:24:06,381] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0202.TIF: [testng] [2024-06-27 01:24:06,450] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-06-27 01:24:06,646] [pool-1-thread-9] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-06-27 01:24:06,805] [pool-1-thread-6] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-06-27 01:24:06,859] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-06-27 01:24:06,912] [pool-1-thread-1] Initializing /data/damian/33m.tiff: [testng] [2024-06-27 01:24:07,509] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2024-06-27 01:24:07,563] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z059.tif: [testng] [2024-06-27 01:24:07,717] [pool-1-thread-6] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] [2024-06-27 01:24:07,816] [pool-1-thread-12] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-06-27 01:24:07,868] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-06-27 01:24:08,178] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-06-27 01:24:08,256] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-06-27 01:24:08,348] [pool-1-thread-4] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-06-27 01:24:08,498] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-06-27 01:24:08,699] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-06-27 01:24:08,808] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] [2024-06-27 01:24:08,835] [pool-1-thread-3] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-06-27 01:24:08,945] [pool-1-thread-11] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-06-27 01:24:09,252] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-06-27 01:24:09,421] [pool-1-thread-10] Initializing /data/julien/baldindq-OVA.TIF: [testng] [2024-06-27 01:24:09,526] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z025.tif: [testng] [2024-06-27 01:24:09,680] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0227.TIF: [testng] [2024-06-27 01:24:09,778] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-06-27 01:24:09,891] [pool-1-thread-7] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-06-27 01:24:09,967] 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[testng] [2024-06-27 01:24:33,261] [pool-1-thread-8] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-06-27 01:24:33,290] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-06-27 01:24:33,325] [pool-1-thread-11] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-06-27 01:24:33,719] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-06-27 01:24:33,929] [pool-1-thread-5] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-06-27 01:24:34,162] [pool-1-thread-7] Initializing /data/josiah/cell-Z19.C1.tiff: [testng] [2024-06-27 01:24:34,231] [pool-1-thread-12] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-06-27 01:24:34,274] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-06-27 01:24:34,308] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z013.tif: [testng] [2024-06-27 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01:25:26,231] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0216.TIF: [testng] [2024-06-27 01:25:26,323] [pool-1-thread-12] Initializing /data/public/libtiff/jim___ah.tif: [testng] [2024-06-27 01:25:26,575] [pool-1-thread-1] Initializing /data/damian/30m.tiff: [testng] [2024-06-27 01:25:26,686] [pool-1-thread-2] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2024-06-27 01:25:27,097] [pool-1-thread-1] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-06-27 01:25:27,224] [pool-1-thread-8] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-06-27 01:25:27,410] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z028.tif: [testng] [2024-06-27 01:25:27,595] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-06-27 01:25:27,711] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z056.tif: [testng] [2024-06-27 01:25:27,786] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z013.tif: 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[testng] [2024-06-27 01:25:28,966] [pool-1-thread-5] Initializing /data/misc/mri-new.mov: [testng] [2024-06-27 01:25:29,032] [pool-1-thread-12] Initializing /data/damian/24m.tiff: [testng] [2024-06-27 01:25:29,172] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-06-27 01:25:29,228] [pool-1-thread-8] Initializing /data/carolyn/tumor_1.tif: [testng] [2024-06-27 01:25:29,259] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z039.tif: [testng] [2024-06-27 01:25:29,290] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0235.TIF: [testng] [2024-06-27 01:25:29,522] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z024.tif: [testng] [2024-06-27 01:25:29,605] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-06-27 01:25:29,636] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-06-27 01:25:29,673] [pool-1-thread-8] Initializing 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01:25:57,498] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z008.tif: [testng] [2024-06-27 01:25:57,759] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-06-27 01:25:57,853] [pool-1-thread-5] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-06-27 01:26:00,043] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-06-27 01:26:00,079] [pool-1-thread-4] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2024-06-27 01:26:00,129] [pool-1-thread-12] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2024-06-27 01:26:00,459] [pool-1-thread-2] Initializing /data/michael/MFISH.tiff: [testng] [2024-06-27 01:26:00,619] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-06-27 01:26:00,656] [pool-1-thread-1] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-06-27 01:26:00,762] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z063.tif: [testng] [2024-06-27 01:26:00,848] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-06-27 01:26:00,983] [pool-1-thread-12] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-06-27 01:26:01,108] [pool-1-thread-3] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-06-27 01:26:01,158] [pool-1-thread-2] Initializing /data/josh/stack.tif: [testng] [2024-06-27 01:26:01,309] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] [2024-06-27 01:26:01,577] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-06-27 01:26:01,661] [pool-1-thread-6] Initializing /data/curtis/map/the-quick: [testng] [2024-06-27 01:26:01,704] [pool-1-thread-3] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-06-27 01:26:01,979] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z010.tif: [testng] [2024-06-27 01:26:02,219] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-06-27 01:26:02,257] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-06-27 01:26:02,387] [pool-1-thread-12] Initializing /data/lzw/DendriteForks.tif: [testng] [2024-06-27 01:26:02,533] [pool-1-thread-2] Initializing /data/qa-7589/CalGrid2.tif: [testng] [2024-06-27 01:26:02,609] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z037.tif: [testng] [2024-06-27 01:26:02,944] [pool-1-thread-4] Initializing /data/tamjid/Image_843.tif: [testng] [2024-06-27 01:26:02,978] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z016.tif: [testng] [2024-06-27 01:26:03,014] [pool-1-thread-2] Initializing /data/curtis/images24.tiff: [testng] [2024-06-27 01:26:03,428] [pool-1-thread-3] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-06-27 01:26:03,484] [pool-1-thread-2] Initializing 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01:26:05,724] [pool-1-thread-8] Initializing /data/jeff/erdas_spnad83.tif: [testng] [2024-06-27 01:26:05,932] [pool-1-thread-3] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-06-27 01:26:06,017] [pool-1-thread-12] Initializing /data/curtis/test2.tiff: [testng] [2024-06-27 01:26:06,176] [pool-1-thread-8] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-06-27 01:26:06,278] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-06-27 01:26:06,480] [pool-1-thread-3] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-06-27 01:26:06,994] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-06-27 01:26:07,179] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-06-27 01:26:07,266] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-06-27 01:26:07,340] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-06-27 01:26:07,535] [pool-1-thread-8] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-06-27 01:26:07,598] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-06-27 01:26:07,683] [pool-1-thread-3] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-06-27 01:26:07,724] [pool-1-thread-12] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-06-27 01:26:07,981] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x48.tiff: [testng] [2024-06-27 01:26:08,113] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-06-27 01:26:08,155] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-06-27 01:26:08,183] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z019.tif: [testng] [2024-06-27 01:26:08,385] [pool-1-thread-10] Initializing /data/martin/head.tif: [testng] [2024-06-27 01:26:08,519] [pool-1-thread-2] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-06-27 01:26:08,699] [pool-1-thread-3] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-06-27 01:26:08,968] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-64.tiff: [testng] [2024-06-27 01:26:09,080] [pool-1-thread-9] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-06-27 01:26:09,129] [pool-1-thread-11] Initializing /data/josiah/cell-Z3.C1.tiff: [testng] [2024-06-27 01:26:09,171] [pool-1-thread-12] Initializing /data/josiah/cell-Z32.C0.tiff: [testng] [2024-06-27 01:26:09,240] [pool-1-thread-10] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-06-27 01:26:09,291] [pool-1-thread-3] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-06-27 01:26:09,543] [pool-1-thread-6] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-06-27 01:26:11,413] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-06-27 01:26:11,464] [pool-1-thread-11] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-06-27 01:26:11,539] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-06-27 01:26:11,857] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z053.tif: [testng] [2024-06-27 01:26:12,020] [pool-1-thread-11] Initializing /data/wayne/m51-16bit.tif: [testng] [2024-06-27 01:26:12,159] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z012.tif: [testng] [2024-06-27 01:26:12,207] [pool-1-thread-9] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-06-27 01:26:12,255] [pool-1-thread-10] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-06-27 01:26:12,538] [pool-1-thread-1] Initializing /data/bene/3d-example-stack.tif: [testng] [2024-06-27 01:26:12,630] [pool-1-thread-12] Initializing /data/damian/12m.tiff: [testng] [2024-06-27 01:26:12,712] [pool-1-thread-11] Initializing /data/public/condensation/A6.pattern2.tif: [testng] [2024-06-27 01:26:12,775] [pool-1-thread-9] Initializing /data/paulh/quickpollen4_w1_t1.tif: [testng] [2024-06-27 01:26:12,868] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-06-27 01:26:13,059] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0256.TIF: [testng] [2024-06-27 01:26:13,170] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-06-27 01:26:13,197] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-06-27 01:26:13,253] [pool-1-thread-11] Initializing /data/josiah/cell-Z9.C1.tiff: [testng] [2024-06-27 01:26:13,336] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-06-27 01:26:13,402] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-06-27 01:26:13,544] [pool-1-thread-10] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-06-27 01:26:13,578] [pool-1-thread-1] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-06-27 01:26:13,732] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-06-27 01:26:13,769] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] [2024-06-27 01:26:13,791] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-06-27 01:26:13,814] [pool-1-thread-12] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-06-27 01:26:14,523] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-06-27 01:26:14,573] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-06-27 01:26:14,649] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] [2024-06-27 01:26:14,676] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z005.tif: [testng] [2024-06-27 01:26:14,700] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-06-27 01:26:14,719] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-06-27 01:26:14,996] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-06-27 01:26:15,112] [pool-1-thread-10] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-06-27 01:26:15,188] [pool-1-thread-4] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-06-27 01:26:15,425] [pool-1-thread-9] Initializing /data/big-images/4kx4k.tif: [testng] [2024-06-27 01:26:15,469] [pool-1-thread-3] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-06-27 01:26:15,532] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] [2024-06-27 01:26:15,561] [pool-1-thread-2] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-06-27 01:26:15,736] [pool-1-thread-10] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-06-27 01:26:15,846] [pool-1-thread-11] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-06-27 01:26:15,869] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-06-27 01:26:15,919] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-06-27 01:26:16,250] [pool-1-thread-4] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-06-27 01:26:16,384] [pool-1-thread-2] Initializing /data/qa-4968/twocars2.tif: [testng] [2024-06-27 01:26:16,611] [pool-1-thread-11] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-06-27 01:26:16,867] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z012.tif: [testng] [2024-06-27 01:26:17,099] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z039.tif: [testng] [2024-06-27 01:26:17,168] [pool-1-thread-4] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-06-27 01:26:17,196] [pool-1-thread-10] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-06-27 01:26:17,253] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-06-27 01:26:17,402] [pool-1-thread-11] Initializing /data/misc/mri-old.mov: [testng] [2024-06-27 01:26:17,589] [pool-1-thread-1] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-06-27 01:26:17,710] [pool-1-thread-11] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-06-27 01:26:17,777] [pool-1-thread-4] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-06-27 01:26:18,091] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-06-27 01:26:18,131] [pool-1-thread-1] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-06-27 01:26:18,255] [pool-1-thread-4] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-06-27 01:26:18,527] [pool-1-thread-11] Initializing /data/misc/wtembryo.tiff: [testng] [2024-06-27 01:26:18,738] [pool-1-thread-1] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-06-27 01:26:19,196] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-06-27 01:26:19,250] [pool-1-thread-1] Initializing /data/jcb/SuppFig5D.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 48 seconds Finished: SUCCESS