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Started by upstream project "BIOFORMATS-test-repo" build number 112 originally caused by: Started by upstream project "Trigger" build number 125 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13023194389166749962.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17408_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:32:24,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:32:24,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:32:24,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:32:24,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:32:24,224 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:32:24,225 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:32:24,225 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:32:24,225 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:32:24,225 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:32:24,256 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:32:24,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 512 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-05 01:32:24,285] [main] java.version = 1.8.0_342 [testng] 01:32:24,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:32:24,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:24,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_01-32-24.log] [testng] 01:32:24,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-05 01:32:24,576] [main] testng.directory = /data [testng] [2024-07-05 01:32:24,577] [main] testng.configDirectory = /config [testng] [2024-07-05 01:32:24,623] [main] testng.multiplier = 1.0 [testng] [2024-07-05 01:32:24,623] [main] testng.in-memory = false [testng] [2024-07-05 01:32:24,624] [main] testng.allow-missing = false [testng] [2024-07-05 01:32:24,624] [main] user.language = en [testng] [2024-07-05 01:32:24,624] [main] user.country = ${user.country} [testng] [2024-07-05 01:32:24,624] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-05 01:32:25,685] [main] ---------------------------------------- [testng] [2024-07-05 01:32:25,686] [main] Total files: 25 [testng] [2024-07-05 01:32:25,686] [main] Scan time: 1.061 s (42 ms/file) [testng] [2024-07-05 01:32:25,686] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-05 01:32:27,654] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] 01:32:27,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:27,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_01-32-27.log] [testng] 01:32:27,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3072eb2 - End of configuration. [testng] [2024-07-05 01:32:27,678] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] 01:32:27,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:27,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-05_01-32-27.log] [testng] 01:32:27,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21185521 - End of configuration. [testng] [2024-07-05 01:32:27,691] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:32:27,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:27,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_01-32-27.log] [testng] 01:32:27,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4775441e - End of configuration. [testng] [2024-07-05 01:32:27,700] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:32:27,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:27,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_01-32-27.log] [testng] 01:32:27,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ce6dcd4 - End of configuration. [testng] [2024-07-05 01:32:27,716] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:32:27,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:27,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_01-32-27.log] [testng] 01:32:27,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5139f4 - End of configuration. [testng] [2024-07-05 01:32:27,848] [pool-1-thread-8] Initializing /data/jqd/sixteenBit.pict: [testng] 01:32:27,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:27,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_01-32-27.log] [testng] 01:32:27,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17a4dafa - End of configuration. [testng] [2024-07-05 01:32:27,858] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] 01:32:27,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:27,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_01-32-27.log] [testng] 01:32:27,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d08340f - End of configuration. [testng] [2024-07-05 01:32:27,875] [pool-1-thread-6] Initializing /data/jqd/mireSixteen.pict: [testng] 01:32:27,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:27,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_01-32-27.log] [testng] 01:32:27,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10138055 - End of configuration. [testng] [2024-07-05 01:32:27,883] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:32:27,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:32:27,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_01-32-27.log] [testng] 01:32:27,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19391d58 - End of configuration. [testng] [2024-07-05 01:32:27,953] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] 01:32:27,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:32:27,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_01-32-27.log] [testng] 01:32:27,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24c1092 - End of configuration. [testng] [2024-07-05 01:32:27,972] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT: [testng] 01:32:27,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:32:27,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:27,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_01-32-27.log] [testng] 01:32:27,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@477f3814 - End of configuration. [testng] [2024-07-05 01:32:28,003] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 01:32:28,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:32:28,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:28,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_01-32-28.log] [testng] 01:32:28,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b752e4 - End of configuration. [testng] [2024-07-05 01:32:29,471] [pool-1-thread-10] Initializing /data/jqd/32bit.pict: [testng] [2024-07-05 01:32:29,530] [pool-1-thread-11] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-07-05 01:32:29,536] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-07-05 01:32:29,547] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-07-05 01:32:29,560] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-07-05 01:32:29,598] [pool-1-thread-8] Initializing /data/brian/images/VENUS.pct: [testng] [2024-07-05 01:32:29,623] [pool-1-thread-3] Initializing /data/misc/planet.png: [testng] [2024-07-05 01:32:29,626] [pool-1-thread-2] Initializing /data/misc/swlogo.pict: [testng] [2024-07-05 01:32:29,641] [pool-1-thread-1] Initializing /data/misc/planet2.pict: [testng] [2024-07-05 01:32:29,669] [pool-1-thread-4] Initializing /data/misc/planet.pict: [testng] [2024-07-05 01:32:29,736] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] [2024-07-05 01:32:30,080] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-07-05 01:32:30,356] [pool-1-thread-3] Initializing /data/brian/images/WHT.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS