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Started by upstream project "BIOFORMATS-test-repo" build number 112 originally caused by: Started by upstream project "Trigger" build number 125 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins15573761871835504442.sh + '[' ariol = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17409_merge_ci -v /uod/idr/repos/curated/ariol:/data -v /uod/idr-scratch/merge-ci/curated/ariol:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:32:37,188 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:32:37,190 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:32:37,190 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:32:37,191 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:32:37,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:32:37,191 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:32:37,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:32:37,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:32:37,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:32:37,192 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:32:37,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:32:37,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:32:37,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:32:37,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:32:37,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:32:37,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:32:37,460 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:32:37,461 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:32:37,461 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:32:37,461 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:32:37,461 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:32:37,462 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:32:37,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-05 01:32:37,472] [main] java.version = 1.8.0_342 [testng] 01:32:37,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:32:37,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:37,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_01-32-37.log] [testng] 01:32:37,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-05 01:32:37,525] [main] testng.directory = /data [testng] [2024-07-05 01:32:37,525] [main] testng.configDirectory = /config [testng] [2024-07-05 01:32:37,537] [main] testng.multiplier = 1.0 [testng] [2024-07-05 01:32:37,538] [main] testng.in-memory = false [testng] [2024-07-05 01:32:37,538] [main] testng.allow-missing = false [testng] [2024-07-05 01:32:37,538] [main] user.language = en [testng] [2024-07-05 01:32:37,538] [main] user.country = ${user.country} [testng] [2024-07-05 01:32:37,538] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-05 01:32:39,107] [main] ---------------------------------------- [testng] [2024-07-05 01:32:39,107] [main] Total files: 33 [testng] [2024-07-05 01:32:39,107] [main] Scan time: 1.569 s (47 ms/file) [testng] [2024-07-05 01:32:39,108] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 26 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-05 01:32:42,703] [pool-1-thread-1] Initializing /data/karen/CBC73B29-94B4-44E8-BFCD-FC7CE4CF8109.jpg: [testng] 01:32:42,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:42,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:42,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_01-32-42.log] [testng] 01:32:42,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673d8af3 - End of configuration. [testng] [2024-07-05 01:32:42,810] [pool-1-thread-12] Initializing /data/karen/6FC2A99A-C50C-4DD0-B379-FA5595AFD2D6.jpg: [testng] 01:32:42,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:42,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:42,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-05_01-32-42.log] [testng] 01:32:42,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7704ba5 - End of configuration. [testng] [2024-07-05 01:32:42,872] [pool-1-thread-11] Initializing /data/karen/025B2189-8F22-49E7-A23A-93FAC9BABE18.jpg: [testng] 01:32:42,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:42,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:42,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_01-32-42.log] [testng] 01:32:42,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7337f382 - End of configuration. [testng] [2024-07-05 01:32:42,956] [pool-1-thread-10] Initializing /data/karen/FE241E3F-2DA8-4BA9-99CB-635663EDE04F.jpg: [testng] 01:32:42,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:42,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:42,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_01-32-42.log] [testng] 01:32:42,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@199377f4 - End of configuration. [testng] [2024-07-05 01:32:43,206] [pool-1-thread-9] Initializing /data/karen/FFB1E060-F4A7-431B-AB93-655CE861D238.jpg: [testng] 01:32:43,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:43,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_01-32-43.log] [testng] 01:32:43,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b5d6264 - End of configuration. [testng] [2024-07-05 01:32:43,262] [pool-1-thread-8] Initializing /data/karen/DFCC500D-A2DA-4166-909B-87EA112049A3.jpg: [testng] 01:32:43,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:43,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_01-32-43.log] [testng] 01:32:43,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d72609 - End of configuration. [testng] [2024-07-05 01:32:43,326] [pool-1-thread-7] Initializing /data/karen/C8026BD0-CBB2-4C73-B69F-9E505B47D46D.jpg: [testng] 01:32:43,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:43,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_01-32-43.log] [testng] 01:32:43,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f210a68 - End of configuration. [testng] [2024-07-05 01:32:43,392] [pool-1-thread-6] Initializing /data/karen/76336D87-715F-4F65-B069-3D3C548625D5.jpg: [testng] 01:32:43,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:43,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_01-32-43.log] [testng] 01:32:43,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3baaabc - End of configuration. [testng] [2024-07-05 01:32:43,522] [pool-1-thread-5] Initializing /data/karen/26D1C9F6-07D0-4D5F-BD3F-1B7ECB1CB011.jpg: [testng] 01:32:43,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:32:43,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_01-32-43.log] [testng] 01:32:43,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40fa70c1 - End of configuration. [testng] [2024-07-05 01:32:43,587] [pool-1-thread-4] Initializing /data/karen/AEC8E959-A1A7-4FCA-A755-F3D9DA44C118.jpg: [testng] 01:32:43,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:32:43,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_01-32-43.log] [testng] 01:32:43,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d80cbf - End of configuration. [testng] [2024-07-05 01:32:43,686] [pool-1-thread-3] Initializing /data/karen/0017007C-2559-4778-962F-8C4951E89A35.jpg: [testng] 01:32:43,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:32:43,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_01-32-43.log] [testng] 01:32:43,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6fca9b - End of configuration. [testng] [2024-07-05 01:32:43,750] [pool-1-thread-2] Initializing /data/karen/885FB907-C91D-4E8E-87AB-611D8A61402C.jpg: [testng] 01:32:43,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:32:43,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:43,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_01-32-43.log] [testng] 01:32:43,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2039c531 - End of configuration. [testng] [2024-07-05 01:32:49,337] [pool-1-thread-4] Initializing /data/karen/BB1976B8-C06C-4CFC-8C94-7AEF45E3E191.jpg: [testng] [2024-07-05 01:32:49,389] [pool-1-thread-2] Initializing /data/karen/04CBE9A7-FA1B-4556-9900-6D869E85FFC7.jpg: [testng] [2024-07-05 01:32:49,540] [pool-1-thread-8] Initializing /data/karen/94227E77-1CEA-4531-BAD7-1B9152596BC1.jpg: [testng] [2024-07-05 01:32:49,647] [pool-1-thread-9] Initializing /data/karen/425C6157-4CFF-434F-8CDC-5D10CE65F168.jpg: [testng] [2024-07-05 01:32:49,705] [pool-1-thread-11] Initializing /data/karen/C6492D1B-CEB2-4CBB-B4E8-88B8828E763D.jpg: [testng] [2024-07-05 01:32:50,104] [pool-1-thread-5] Initializing /data/karen/6F685C73-2CD1-421E-B85B-FC1FA4F3F155.jpg: [testng] [2024-07-05 01:32:50,264] [pool-1-thread-7] Initializing /data/karen/612E1340-B118-425D-9B59-FD7860AA2B8F.jpg: [testng] [2024-07-05 01:32:50,425] [pool-1-thread-10] Initializing /data/karen/E8E773C3-C86B-4457-9D2E-2DFB91EF1714.jpg: [testng] [2024-07-05 01:32:50,481] [pool-1-thread-3] Initializing /data/karen/6F44F067-6003-458E-871B-1F9AE1F7C928.jpg: [testng] [2024-07-05 01:32:50,541] [pool-1-thread-12] Initializing /data/karen/07AEF934-D3B2-4558-AB51-4BD744DF2DFF.jpg: [testng] [2024-07-05 01:32:50,791] [pool-1-thread-1] Initializing /data/karen/FD96C1D1-ABE6-4478-A673-652AA63435F2.jpg: [testng] [2024-07-05 01:32:50,967] [pool-1-thread-6] Initializing /data/karen/3AF38F06-D489-4DDA-9806-14A3E12FCE7B.jpg: [testng] [2024-07-05 01:32:54,213] [pool-1-thread-8] Initializing /data/karen/9C2E458B-73C5-4D03-84F7-060F83B4D95A.jpg: [testng] [2024-07-05 01:32:54,476] [pool-1-thread-4] Initializing /data/karen/E1445030-57F3-4E15-8BF5-763E0F691B0C.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1378, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 25 seconds Finished: SUCCESS