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Started by upstream project "BIOFORMATS-test-repo" build number 112 originally caused by: Started by upstream project "Trigger" build number 125 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6449018518785945172.sh + '[' afi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17438_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:53:27,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:53:27,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:53:27,524 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:53:27,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:53:27,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:53:27,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:53:27,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:53:27,526 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:53:27,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:53:27,527 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:53:27,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:53:27,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:53:27,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:53:27,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:53:27,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:53:27,900 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:53:27,909 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:53:27,910 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:53:27,910 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:53:27,910 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:53:27,910 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:53:27,911 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:53:27,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 384 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-05 01:53:27,922] [main] java.version = 1.8.0_342 [testng] 01:53:27,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:53:27,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:27,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_01-53-27.log] [testng] 01:53:27,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-05 01:53:27,983] [main] testng.directory = /data [testng] [2024-07-05 01:53:27,983] [main] testng.configDirectory = /config [testng] [2024-07-05 01:53:27,996] [main] testng.multiplier = 1.0 [testng] [2024-07-05 01:53:27,997] [main] testng.in-memory = false [testng] [2024-07-05 01:53:27,997] [main] testng.allow-missing = false [testng] [2024-07-05 01:53:27,997] [main] user.language = en [testng] [2024-07-05 01:53:27,997] [main] user.country = ${user.country} [testng] [2024-07-05 01:53:27,997] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-05 01:53:28,775] [main] ---------------------------------------- [testng] [2024-07-05 01:53:28,775] [main] Total files: 16 [testng] [2024-07-05 01:53:28,776] [main] Scan time: 0.778 s (48 ms/file) [testng] [2024-07-05 01:53:28,776] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-05 01:53:39,402] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 01:53:39,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:53:39,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:39,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_01-53-39.log] [testng] 01:53:39,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20118a19 - End of configuration. [testng] [2024-07-05 01:53:39,487] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 01:53:39,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:53:39,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:39,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-05_01-53-39.log] [testng] 01:53:39,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f4867b7 - End of configuration. [testng] [2024-07-05 01:53:39,711] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 01:53:39,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:53:39,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:39,712 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_01-53-39.log] [testng] 01:53:39,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ddf635c - End of configuration. [testng] [2024-07-05 01:53:39,793] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 01:53:39,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:53:39,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:39,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_01-53-39.log] [testng] 01:53:39,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a0653a - End of configuration. [testng] [2024-07-05 01:53:39,868] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 01:53:39,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:53:39,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:39,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_01-53-39.log] [testng] 01:53:39,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c9cec67 - End of configuration. [testng] [2024-07-05 01:53:39,996] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 01:53:39,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:53:39,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:39,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_01-53-39.log] [testng] 01:53:39,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7548d909 - End of configuration. [testng] [2024-07-05 01:53:40,088] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 01:53:40,088 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:53:40,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:40,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_01-53-40.log] [testng] 01:53:40,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@125b081a - End of configuration. [testng] [2024-07-05 01:53:40,288] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 01:53:40,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:53:40,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:40,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_01-53-40.log] [testng] 01:53:40,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6861e4b8 - End of configuration. [testng] [2024-07-05 01:53:40,359] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 01:53:40,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:53:40,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:40,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_01-53-40.log] [testng] 01:53:40,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@376169a3 - End of configuration. [testng] [2024-07-05 01:53:40,461] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 01:53:40,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:53:40,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:40,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_01-53-40.log] [testng] 01:53:40,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bfa2657 - End of configuration. [testng] [2024-07-05 01:53:40,531] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 01:53:40,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:53:40,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:40,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_01-53-40.log] [testng] 01:53:40,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d7e4d8e - End of configuration. [testng] [2024-07-05 01:53:40,610] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 01:53:40,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:53:40,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:40,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_01-53-40.log] [testng] 01:53:40,612 |-INFO in ch.qos.logback.core.sift.SiftProcessor@478c4d90 - End of configuration. [testng] [2024-07-05 01:54:31,184] [pool-1-thread-1] Initializing /data/samples/5414.afi: [testng] [2024-07-05 01:54:32,292] [pool-1-thread-8] Initializing /data/samples/5343.afi: [testng] [2024-07-05 01:54:32,764] [pool-1-thread-3] Initializing /data/samples/5371.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 58 seconds Finished: SUCCESS