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Started by upstream project "BIOFORMATS-test-repo" build number 112 originally caused by: Started by upstream project "Trigger" build number 125 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13982415286410931498.sh + '[' sis = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_17439_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:55:30,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:55:30,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:55:30,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:55:30,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:55:30,452 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:55:30,452 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:55:30,453 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:55:30,453 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:55:30,453 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:55:30,454 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:55:30,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 490 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-05 01:55:30,478] [main] java.version = 1.8.0_342 [testng] 01:55:30,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:55:30,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:30,692 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-05_01-55-30.log] [testng] 01:55:30,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-05 01:55:30,697] [main] testng.directory = /data [testng] [2024-07-05 01:55:30,697] [main] testng.configDirectory = /config [testng] [2024-07-05 01:55:30,738] [main] testng.multiplier = 1.0 [testng] [2024-07-05 01:55:30,738] [main] testng.in-memory = false [testng] [2024-07-05 01:55:30,738] [main] testng.allow-missing = false [testng] [2024-07-05 01:55:30,739] [main] user.language = en [testng] [2024-07-05 01:55:30,739] [main] user.country = ${user.country} [testng] [2024-07-05 01:55:30,739] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-05 01:55:31,831] [main] ---------------------------------------- [testng] [2024-07-05 01:55:31,832] [main] Total files: 13 [testng] [2024-07-05 01:55:31,832] [main] Scan time: 1.092 s (84 ms/file) [testng] [2024-07-05 01:55:31,832] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-05 01:55:33,581] [pool-1-thread-1] Initializing /data/dimitri/ELN-ARM_00049_38.tif: [testng] 01:55:33,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:55:33,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:33,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-05_01-55-33.log] [testng] 01:55:33,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a479926 - End of configuration. [testng] [2024-07-05 01:55:33,638] [pool-1-thread-11] Initializing /data/glen/CG 3.31 10K.tif: [testng] 01:55:33,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:55:33,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:33,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-05_01-55-33.log] [testng] 01:55:33,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28541b46 - End of configuration. [testng] [2024-07-05 01:55:33,685] [pool-1-thread-10] Initializing /data/glen/L1468a-2_4_15000X.tif: [testng] 01:55:33,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:55:33,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:33,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-05_01-55-33.log] [testng] 01:55:33,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37447c4b - End of configuration. [testng] [2024-07-05 01:55:33,752] [pool-1-thread-9] Initializing /data/glen/L1500k P_3_7500X.tif: [testng] 01:55:33,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:55:33,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:33,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-05_01-55-33.log] [testng] 01:55:33,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@106c6a8a - End of configuration. [testng] [2024-07-05 01:55:33,814] [pool-1-thread-8] Initializing /data/glen/L1500k P_4_7500X.tif: [testng] 01:55:33,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:55:33,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:33,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-05_01-55-33.log] [testng] 01:55:33,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73ed80c8 - End of configuration. [testng] [2024-07-05 01:55:33,873] [pool-1-thread-7] Initializing /data/pki/Tv2.tif: [testng] 01:55:33,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:55:33,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:33,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-05_01-55-33.log] [testng] 01:55:33,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3df275b9 - End of configuration. [testng] [2024-07-05 01:55:33,938] [pool-1-thread-6] Initializing /data/strand/FS44-1-254.tif: [testng] 01:55:33,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:55:33,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:33,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-05_01-55-33.log] [testng] 01:55:33,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70350d25 - End of configuration. [testng] [2024-07-05 01:55:34,000] [pool-1-thread-5] Initializing /data/glen/CG 3.31 20K.tif: [testng] 01:55:34,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:55:34,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:34,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-05_01-55-34.log] [testng] 01:55:34,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7654d867 - End of configuration. [testng] [2024-07-05 01:55:34,061] [pool-1-thread-4] Initializing /data/glen/CG 3.31 15K.tif: [testng] 01:55:34,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:55:34,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:34,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-05_01-55-34.log] [testng] 01:55:34,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dfb2b5 - End of configuration. [testng] [2024-07-05 01:55:34,114] [pool-1-thread-3] Initializing /data/russell/Arbacia 2week ADL.tif: [testng] 01:55:34,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:55:34,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:34,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-05_01-55-34.log] [testng] 01:55:34,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f80843a - End of configuration. [testng] [2024-07-05 01:55:34,159] [pool-1-thread-2] Initializing /data/strand/MIA.tif: [testng] 01:55:34,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:55:34,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:55:34,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-05_01-55-34.log] [testng] 01:55:34,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6205bb4f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS