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Started by upstream project "BIOFORMATS-test-repo" build number 12 originally caused by: Started by upstream project "Trigger" build number 15 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins6377359580142110673.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1785_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:20:40,059 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:20:40,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 00:20:40,061 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:40,062 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:40,063 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:20:40,064 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:20:40,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:20:40,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:40,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:40,066 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:20:40,066 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:20:40,067 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:20:40,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:20:40,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:20:40,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:20:40,331 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:20:40,355 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:20:40,355 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:20:40,355 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:20:40,356 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:20:40,356 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 00:20:40,357 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 00:20:40,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 292 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-26 00:20:40,367] [main] java.version = 11.0.16 [testng] 00:20:40,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:20:40,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:20:40,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-26_00-20-40.log] [testng] 00:20:40,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-26 00:20:40,420] [main] testng.directory = /data [testng] [2024-03-26 00:20:40,421] [main] testng.configDirectory = /config [testng] [2024-03-26 00:20:40,432] [main] testng.multiplier = 1.0 [testng] [2024-03-26 00:20:40,433] [main] testng.in-memory = false [testng] [2024-03-26 00:20:40,434] [main] testng.allow-missing = false [testng] [2024-03-26 00:20:40,434] [main] user.language = en [testng] [2024-03-26 00:20:40,434] [main] user.country = ${user.country} [testng] [2024-03-26 00:20:40,434] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-26 00:20:57,145] [main] ---------------------------------------- [testng] [2024-03-26 00:20:57,145] [main] Total files: 283 [testng] [2024-03-26 00:20:57,145] [main] Scan time: 16.711 s (59 ms/file) [testng] [2024-03-26 00:20:57,145] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-26 00:30:00,001] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] 00:30:00,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:30:00,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:00,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-26_00-30-00.log] [testng] 00:30:00,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73ab517f - End of configuration. [testng] [2024-03-26 00:30:02,201] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] 00:30:02,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:30:02,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:02,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-26_00-30-02.log] [testng] 00:30:02,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c463e63 - End of configuration. [testng] [2024-03-26 00:30:02,715] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] 00:30:02,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:30:02,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:02,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-26_00-30-02.log] [testng] 00:30:02,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f1789ef - End of configuration. [testng] [2024-03-26 00:30:03,201] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] 00:30:03,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:30:03,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:03,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-26_00-30-03.log] [testng] 00:30:03,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65db0db3 - End of configuration. [testng] [2024-03-26 00:30:03,653] [pool-1-thread-9] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 00:30:03,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:30:03,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:03,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-26_00-30-03.log] [testng] 00:30:03,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ff7eb85 - End of configuration. [testng] [2024-03-26 00:30:03,739] [pool-1-thread-8] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] 00:30:03,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:30:03,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:03,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-26_00-30-03.log] [testng] 00:30:03,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa05bd9 - End of configuration. [testng] [2024-03-26 00:30:03,901] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] 00:30:03,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:30:03,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:03,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-26_00-30-03.log] [testng] 00:30:03,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89a04d1 - End of configuration. [testng] [2024-03-26 00:30:04,650] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif: [testng] 00:30:04,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:30:04,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:04,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-26_00-30-04.log] [testng] 00:30:04,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b06d3df - End of configuration. [testng] [2024-03-26 00:30:04,875] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 00:30:04,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:30:04,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:04,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-26_00-30-04.log] [testng] 00:30:04,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dfd2dda - End of configuration. [testng] [2024-03-26 00:30:05,101] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] 00:30:05,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:30:05,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:05,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-26_00-30-05.log] [testng] 00:30:05,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dbf1e1 - End of configuration. [testng] [2024-03-26 00:30:09,992] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] 00:30:09,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:30:09,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:09,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-26_00-30-09.log] [testng] 00:30:09,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aa896a0 - End of configuration. [testng] [2024-03-26 00:30:10,565] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] 00:30:10,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:30:10,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:10,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-26_00-30-10.log] [testng] 00:30:10,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c73d6d5 - End of configuration. [testng] [2024-03-26 00:30:16,538] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-03-26 00:30:16,825] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-03-26 00:30:18,268] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-03-26 00:30:18,524] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-03-26 00:30:19,042] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-03-26 00:30:20,195] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-03-26 00:30:20,916] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-03-26 00:30:21,243] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-03-26 00:30:21,392] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-03-26 00:30:21,666] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-03-26 00:30:22,172] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-03-26 00:30:24,636] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-03-26 00:30:25,651] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir: [testng] [2024-03-26 00:30:46,090] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-03-26 00:30:47,528] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-03-26 00:30:48,008] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-03-26 00:30:48,886] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-03-26 00:30:48,970] [pool-1-thread-5] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-03-26 00:30:49,661] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-03-26 00:30:51,045] [pool-1-thread-10] Initializing /data/olympus/XYZt.vsi: [testng] [2024-03-26 00:30:52,831] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 00:30:53,763] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-03-26 00:30:54,165] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-03-26 00:30:54,375] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-03-26 00:30:55,805] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-03-26 00:30:56,002] [pool-1-thread-8] Initializing /data/qa-17270/stack1.oir: [testng] [2024-03-26 00:30:58,266] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-03-26 00:30:58,480] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-03-26 00:31:00,909] [pool-1-thread-2] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-03-26 00:31:08,068] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-03-26 00:31:08,485] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-03-26 00:31:09,418] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-03-26 00:31:11,477] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-03-26 00:31:12,981] [pool-1-thread-7] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-03-26 00:31:13,640] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-03-26 00:31:14,119] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-03-26 00:31:14,619] [pool-1-thread-3] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-03-26 00:31:17,201] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-03-26 00:31:17,824] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-03-26 00:31:19,532] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-03-26 00:31:20,786] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-03-26 00:31:21,171] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-03-26 00:31:21,825] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-03-26 00:31:26,139] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-03-26 00:31:27,122] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-03-26 00:31:29,072] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-03-26 00:31:30,042] [pool-1-thread-1] Initializing /data/olympus/XYZt.oir: [testng] [2024-03-26 00:31:32,228] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-03-26 00:31:32,959] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-03-26 00:31:34,802] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-03-26 00:31:36,883] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-03-26 00:31:37,305] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-03-26 00:31:38,025] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-03-26 00:31:38,627] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-03-26 00:31:39,231] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-03-26 00:31:40,239] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-03-26 00:31:43,352] [pool-1-thread-7] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-03-26 00:31:43,590] [pool-1-thread-12] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-03-26 00:31:44,269] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-03-26 00:31:45,263] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-03-26 00:31:47,271] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-03-26 00:31:47,351] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-03-26 00:31:47,963] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-03-26 00:31:52,832] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-03-26 00:31:52,949] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-03-26 00:31:54,639] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-03-26 00:31:55,057] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-03-26 00:31:55,604] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-03-26 00:31:56,320] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-03-26 00:31:56,562] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-03-26 00:31:56,659] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-03-26 00:31:56,787] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-03-26 00:31:57,359] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-03-26 00:31:58,193] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-03-26 00:31:58,717] [pool-1-thread-1] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-03-26 00:31:58,867] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-03-26 00:31:59,650] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-03-26 00:32:00,096] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-03-26 00:32:00,594] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-03-26 00:32:04,047] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-03-26 00:32:04,534] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-03-26 00:32:05,996] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-03-26 00:32:07,577] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-03-26 00:32:16,827] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-03-26 00:32:16,981] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-03-26 00:32:17,499] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-03-26 00:32:17,640] [pool-1-thread-5] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-03-26 00:32:18,668] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-03-26 00:32:19,320] [pool-1-thread-12] Initializing /data/qa-17270/image1.oir: [testng] [2024-03-26 00:32:19,671] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-03-26 00:32:20,232] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-03-26 00:32:20,625] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-03-26 00:32:21,128] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-03-26 00:32:22,017] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-03-26 00:32:23,110] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-03-26 00:32:23,582] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-03-26 00:32:24,593] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-03-26 00:32:24,893] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-03-26 00:32:27,759] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-03-26 00:32:28,129] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-03-26 00:32:28,308] [pool-1-thread-2] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-03-26 00:34:23,307] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-03-26 00:34:24,595] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-03-26 00:34:25,448] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-03-26 00:34:26,113] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-03-26 00:34:26,536] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-03-26 00:34:53,939] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-03-26 00:34:54,088] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-03-26 00:34:54,627] [pool-1-thread-4] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-03-26 00:34:55,174] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-03-26 00:34:55,919] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-03-26 00:34:57,917] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-03-26 00:34:59,095] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-03-26 00:34:59,267] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-03-26 00:34:59,851] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-03-26 00:35:00,673] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-03-26 00:35:02,137] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-03-26 00:35:02,982] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-03-26 00:35:03,853] [pool-1-thread-12] Initializing /data/qa-17917/f10010.oir: [testng] [2024-03-26 00:35:33,031] [pool-1-thread-9] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-03-26 00:35:33,283] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-03-26 00:35:34,447] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-03-26 00:35:35,722] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-03-26 00:35:36,267] [pool-1-thread-3] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-03-26 00:35:37,114] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-03-26 00:35:37,784] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-03-26 00:35:38,648] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-03-26 00:35:38,956] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-03-26 00:35:39,168] [pool-1-thread-1] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-03-26 00:35:40,843] [pool-1-thread-3] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-03-26 00:35:41,246] [pool-1-thread-7] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-03-26 00:35:41,846] [pool-1-thread-8] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-03-26 00:35:44,330] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-03-26 00:35:44,766] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-03-26 00:35:45,984] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-03-26 00:35:46,463] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-03-26 00:35:46,897] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-03-26 00:35:47,107] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-03-26 00:35:48,365] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-03-26 00:35:48,832] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-03-26 00:35:49,675] [pool-1-thread-1] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-03-26 00:35:50,342] [pool-1-thread-7] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-03-26 00:36:02,701] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-03-26 00:36:03,096] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-03-26 00:36:04,156] [pool-1-thread-8] Initializing /data/qa-17335/1.oir: [testng] [2024-03-26 00:36:04,712] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-03-26 00:36:05,959] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-03-26 00:36:07,149] [pool-1-thread-3] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-03-26 00:36:07,715] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-03-26 00:36:07,950] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-03-26 00:36:08,229] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-03-26 00:36:09,180] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-03-26 00:36:09,525] [pool-1-thread-10] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-03-26 00:36:10,556] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-03-26 00:36:10,810] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-03-26 00:36:11,038] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-03-26 00:36:11,279] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-03-26 00:36:11,556] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-03-26 00:36:11,813] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-03-26 00:36:12,332] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-03-26 00:36:13,681] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-03-26 00:36:13,994] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-03-26 00:36:14,530] [pool-1-thread-9] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-03-26 00:36:14,695] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-03-26 00:36:15,369] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-03-26 00:36:15,806] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-03-26 00:36:16,540] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-03-26 00:36:16,697] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-03-26 00:36:17,717] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-03-26 00:36:18,124] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-03-26 00:36:18,842] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-03-26 00:36:19,182] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-03-26 00:37:09,262] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-03-26 00:37:09,526] [pool-1-thread-10] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-03-26 00:37:10,230] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-03-26 00:37:11,084] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 2, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 54 minutes 55 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE