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Started by upstream project "BIOFORMATS-test-repo" build number 12 originally caused by: Started by upstream project "Trigger" build number 15 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5033251878323247081.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_1786_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:20:41,316 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:20:41,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 00:20:41,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:41,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:20:41,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:20:41,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:20:41,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:20:41,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:41,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:20:41,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:20:41,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:20:41,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:20:41,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:20:41,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:20:41,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:20:41,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:20:41,535 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:20:41,535 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:20:41,535 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:20:41,535 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:20:41,535 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 00:20:41,536 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 00:20:41,536 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 215 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-26 00:20:41,547] [main] java.version = 11.0.16 [testng] 00:20:41,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:20:41,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:20:41,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-26_00-20-41.log] [testng] 00:20:41,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-26 00:20:41,597] [main] testng.directory = /data [testng] [2024-03-26 00:20:41,597] [main] testng.configDirectory = /config [testng] [2024-03-26 00:20:41,606] [main] testng.multiplier = 1.0 [testng] [2024-03-26 00:20:41,607] [main] testng.in-memory = false [testng] [2024-03-26 00:20:41,608] [main] testng.allow-missing = false [testng] [2024-03-26 00:20:41,608] [main] user.language = en [testng] [2024-03-26 00:20:41,608] [main] user.country = ${user.country} [testng] [2024-03-26 00:20:41,608] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-26 00:21:03,037] [main] ---------------------------------------- [testng] [2024-03-26 00:21:03,038] [main] Total files: 4424 [testng] [2024-03-26 00:21:03,038] [main] Scan time: 21.429 s (4 ms/file) [testng] [2024-03-26 00:21:03,038] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-26 00:26:23,606] [pool-1-thread-1] Initializing /data/bene/3d-example-stack.tif: [testng] 00:26:23,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:26:23,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:23,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-26_00-26-23.log] [testng] 00:26:23,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e0c6b0a - End of configuration. [testng] [2024-03-26 00:26:23,815] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] 00:26:23,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:26:23,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:23,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-26_00-26-23.log] [testng] 00:26:23,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29a9aa1c - End of configuration. [testng] [2024-03-26 00:26:23,925] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] 00:26:23,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:26:23,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:23,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-26_00-26-23.log] [testng] 00:26:23,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18874d8f - End of configuration. [testng] [2024-03-26 00:26:24,041] [pool-1-thread-10] Initializing /data/josiah/cell-Z10.C1.tiff: [testng] 00:26:24,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:26:24,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:24,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-26_00-26-24.log] [testng] 00:26:24,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a824784 - End of configuration. [testng] [2024-03-26 00:26:24,172] [pool-1-thread-9] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] 00:26:24,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:26:24,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:24,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-26_00-26-24.log] [testng] 00:26:24,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10343757 - End of configuration. [testng] [2024-03-26 00:26:24,289] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 00:26:24,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:26:24,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:24,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-26_00-26-24.log] [testng] 00:26:24,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75704a88 - End of configuration. [testng] [2024-03-26 00:26:24,432] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] 00:26:24,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:26:24,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:24,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-26_00-26-24.log] [testng] 00:26:24,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6072fdd9 - End of configuration. [testng] [2024-03-26 00:26:24,555] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] 00:26:24,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:26:24,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:24,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-26_00-26-24.log] [testng] 00:26:24,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34b45d3c - End of configuration. [testng] [2024-03-26 00:26:24,740] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] 00:26:24,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:26:24,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:24,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-26_00-26-24.log] [testng] 00:26:24,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a712d9 - End of configuration. [testng] [2024-03-26 00:26:25,031] [pool-1-thread-4] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] 00:26:25,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:26:25,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:25,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-26_00-26-25.log] [testng] 00:26:25,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44600dec - End of configuration. [testng] [2024-03-26 00:26:25,165] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z004.tif: [testng] 00:26:25,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:26:25,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:25,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-26_00-26-25.log] [testng] 00:26:25,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e31e5c7 - End of configuration. [testng] [2024-03-26 00:26:25,310] [pool-1-thread-2] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] 00:26:25,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:26:25,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:25,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-26_00-26-25.log] [testng] 00:26:25,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a4a435a - End of configuration. [testng] [2024-03-26 00:26:30,912] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-03-26 00:26:31,898] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-03-26 00:26:32,004] [pool-1-thread-10] Initializing /data/ascb/FND-13_PorterFranziniTransverse_4800.tif: [testng] [2024-03-26 00:26:35,141] [pool-1-thread-4] Initializing /data/alexa/test4.tif: [testng] [2024-03-26 00:26:35,257] [pool-1-thread-7] Initializing /data/brian/MFGTMP_080902150001t001B02f73d2.TIF: [testng] [2024-03-26 00:26:35,509] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-03-26 00:26:35,709] [pool-1-thread-3] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-03-26 00:26:35,930] [pool-1-thread-6] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-03-26 00:26:36,188] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z048.tif: [testng] [2024-03-26 00:26:36,438] [pool-1-thread-8] Initializing /data/ascb/CYT-31_FriendOsmium_4800.tif: [testng] [2024-03-26 00:26:36,641] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z011.tif: [testng] [2024-03-26 00:26:38,236] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-03-26 00:26:38,909] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x32.tiff: [testng] [2024-03-26 00:26:39,083] [pool-1-thread-9] Initializing /data/jonathan/XSEC-02.TIF: [testng] [2024-03-26 00:26:39,259] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-03-26 00:26:39,527] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z054.tif: [testng] [2024-03-26 00:26:39,796] [pool-1-thread-5] Initializing /data/josiah/cell-Z2.C1.tiff: [testng] [2024-03-26 00:26:40,031] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-03-26 00:26:40,265] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-03-26 00:26:40,459] [pool-1-thread-7] Initializing /data/damian/21m.tiff: [testng] [2024-03-26 00:26:41,718] [pool-1-thread-11] Initializing /data/public/condensation/C4.pattern3.tif: [testng] [2024-03-26 00:26:42,134] [pool-1-thread-1] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-03-26 00:26:42,348] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z038.tif: [testng] [2024-03-26 00:26:42,640] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-03-26 00:26:43,755] [pool-1-thread-6] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-03-26 00:26:43,930] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z030.tif: [testng] [2024-03-26 00:26:44,368] [pool-1-thread-12] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-03-26 00:26:44,794] [pool-1-thread-7] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-03-26 00:26:45,034] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-03-26 00:26:45,198] [pool-1-thread-8] Initializing /data/ascb/bad/FND-19_FawcettPhillipsSuccessive_4800.tif: [testng] [2024-03-26 00:26:46,216] [pool-1-thread-9] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-03-26 00:26:46,490] [pool-1-thread-1] Initializing /data/public/libtiff/cramps.tif: [testng] [2024-03-26 00:26:46,680] [pool-1-thread-4] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-03-26 00:26:46,879] [pool-1-thread-11] Initializing /data/ascb/CYT-77_PasolliMouse2_4800.tif: [testng] [2024-03-26 00:26:47,960] [pool-1-thread-3] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-03-26 00:26:48,152] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0258.TIF: [testng] [2024-03-26 00:26:48,431] [pool-1-thread-5] Initializing 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Initializing /data/lzw/test.tif: [testng] [2024-03-26 00:30:31,576] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-60.tiff: [testng] [2024-03-26 00:30:31,842] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] [2024-03-26 00:30:32,060] [pool-1-thread-12] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-03-26 00:30:32,629] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-03-26 00:30:32,746] [pool-1-thread-5] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-03-26 00:30:37,544] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-03-26 00:30:37,843] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-03-26 00:30:38,032] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-03-26 00:30:38,578] [pool-1-thread-8] Initializing 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Initializing /data/tom-kazimiers/test_noexiftool.tiff: [testng] [2024-03-26 00:30:47,043] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] [2024-03-26 00:30:47,132] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-03-26 00:30:48,502] [pool-1-thread-10] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-03-26 00:30:48,970] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-03-26 00:30:49,998] [pool-1-thread-6] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-03-26 00:30:51,253] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-03-26 00:30:52,342] [pool-1-thread-12] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-03-26 00:30:52,834] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-03-26 00:30:53,088] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-03-26 00:30:53,468] [pool-1-thread-2] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-03-26 00:30:54,662] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-03-26 00:30:55,819] [pool-1-thread-12] Initializing /data/misc/ms-paint.png: [testng] [2024-03-26 00:30:55,901] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-03-26 00:30:55,987] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z015.tif: [testng] [2024-03-26 00:30:56,413] [pool-1-thread-8] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-03-26 00:30:56,533] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-03-26 00:30:57,186] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] [2024-03-26 00:30:57,632] [pool-1-thread-12] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-03-26 00:30:57,812] [pool-1-thread-3] Initializing /data/damian/18m.tiff: [testng] [2024-03-26 00:30:57,887] [pool-1-thread-11] Initializing /data/josiah/cell-Z5.C0.tiff: [testng] [2024-03-26 00:30:57,948] [pool-1-thread-9] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-03-26 00:30:59,372] [pool-1-thread-2] Initializing /data/big-images/2kx2k.tif: [testng] [2024-03-26 00:31:00,826] [pool-1-thread-7] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-03-26 00:31:01,777] [pool-1-thread-8] Initializing /data/jeff/test36b.tif: [testng] [2024-03-26 00:31:03,463] [pool-1-thread-11] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-03-26 00:31:03,849] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-03-26 00:31:04,482] [pool-1-thread-9] Initializing /data/stephane/P014.tif: [testng] [2024-03-26 00:31:05,606] [pool-1-thread-8] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-03-26 00:31:07,042] [pool-1-thread-3] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-03-26 00:31:07,374] [pool-1-thread-11] Initializing /data/curtis/test1.tiff: [testng] [2024-03-26 00:31:07,537] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-03-26 00:31:08,048] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-03-26 00:31:08,392] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-03-26 00:31:08,982] [pool-1-thread-9] Initializing /data/edward/TestDoc2.tif: [testng] [2024-03-26 00:31:10,662] [pool-1-thread-8] Initializing /data/public/condensation/C4.pattern8.tif: [testng] [2024-03-26 00:31:11,942] [pool-1-thread-11] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-03-26 00:31:12,320] [pool-1-thread-7] Initializing /data/martin/head.tif: [testng] [2024-03-26 00:31:13,017] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] [2024-03-26 00:31:13,345] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0229.TIF: [testng] [2024-03-26 00:31:14,229] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-03-26 00:31:14,651] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x48.tiff: [testng] [2024-03-26 00:31:17,640] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] [2024-03-26 00:31:18,066] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-03-26 00:31:18,628] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0214.TIF: [testng] [2024-03-26 00:31:19,502] [pool-1-thread-6] Initializing /data/public/condensation/A6.pattern3.tif: [testng] [2024-03-26 00:31:19,911] [pool-1-thread-3] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-03-26 00:31:20,429] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-60.tiff: [testng] [2024-03-26 00:31:20,636] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-03-26 00:31:20,855] [pool-1-thread-10] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-03-26 00:31:22,628] [pool-1-thread-8] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-03-26 00:31:22,724] [pool-1-thread-4] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-03-26 00:31:23,423] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-03-26 00:31:23,913] [pool-1-thread-2] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-03-26 00:31:23,991] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] [2024-03-26 00:31:24,466] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-03-26 00:31:24,516] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z047.tif: [testng] [2024-03-26 00:31:25,313] [pool-1-thread-12] Initializing /data/ascb/FND-25_PaladeGroup_4800.tif: [testng] [2024-03-26 00:31:27,039] [pool-1-thread-8] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-03-26 00:31:28,443] [pool-1-thread-7] Initializing /data/josiah/cell-Z26.C1.tiff: [testng] [2024-03-26 00:31:28,747] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-03-26 00:31:28,938] [pool-1-thread-11] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-03-26 00:31:29,605] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2024-03-26 00:31:30,049] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z042.tif: [testng] [2024-03-26 00:31:30,927] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2024-03-26 00:31:31,347] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-03-26 00:31:31,700] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-03-26 00:31:32,324] [pool-1-thread-4] Initializing /data/curtis/clown.tif: [testng] [2024-03-26 00:31:33,141] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-03-26 00:31:34,536] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z038.tif: [testng] [2024-03-26 00:31:35,436] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] [2024-03-26 00:31:35,516] [pool-1-thread-9] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-03-26 00:31:35,669] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z001.tif: [testng] [2024-03-26 00:31:35,720] [pool-1-thread-6] Initializing /data/misc/mri-stack.tif: [testng] [2024-03-26 00:31:36,506] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z060.tif: [testng] [2024-03-26 00:31:36,862] [pool-1-thread-5] Initializing /data/john/C100915-MA_AXIS_LEH_IMAGE_KIND_FLAT_ICE_3.tif: [testng] [2024-03-26 00:31:37,610] [pool-1-thread-4] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-03-26 00:31:38,238] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-03-26 00:31:39,720] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-03-26 00:31:40,949] [pool-1-thread-3] Initializing /data/ascb/CYT-149_Fader_Fusion.tif: [testng] [2024-03-26 00:31:41,930] [pool-1-thread-2] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-03-26 00:31:42,303] [pool-1-thread-8] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-03-26 00:31:42,650] [pool-1-thread-12] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-03-26 00:31:42,968] [pool-1-thread-9] Initializing /data/josiah/cell-Z12.C0.tiff: [testng] [2024-03-26 00:31:43,226] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-03-26 00:31:43,520] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-03-26 00:31:43,638] [pool-1-thread-11] Initializing /data/curtis/images24.tiff: [testng] [2024-03-26 00:31:44,277] [pool-1-thread-10] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-03-26 00:31:44,835] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-03-26 00:31:45,580] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z062.tif: [testng] [2024-03-26 00:31:46,073] [pool-1-thread-7] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-03-26 00:31:46,367] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-03-26 00:31:46,659] [pool-1-thread-6] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-03-26 00:31:47,050] [pool-1-thread-11] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-03-26 00:31:47,294] [pool-1-thread-1] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Red.tif: [testng] [2024-03-26 00:31:47,365] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-03-26 00:31:47,722] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 minutes 23 seconds Finished: SUCCESS