Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 118
originally caused by:
 Started by upstream project "Trigger" build number 135
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4580350222244956902.sh
+ '[' ivision = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_18496_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 02:48:58,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:48:58,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:48:58,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:48:58,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:48:58,906 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:48:58,906 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:48:58,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:48:58,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:48:58,907 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
   [testng] 02:48:58,907 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
   [testng] 02:48:58,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 422 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-12 02:48:58,917] [main] java.version = 1.8.0_342
   [testng] 02:48:58,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:48:58,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:48:59,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-48-58.log]
   [testng] 02:48:59,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-07-12 02:48:59,004] [main] testng.directory = /data
   [testng] [2024-07-12 02:48:59,004] [main] testng.configDirectory = /config
   [testng] [2024-07-12 02:48:59,016] [main] testng.multiplier = 1.0
   [testng] [2024-07-12 02:48:59,016] [main] testng.in-memory = false
   [testng] [2024-07-12 02:48:59,016] [main] testng.allow-missing = false
   [testng] [2024-07-12 02:48:59,016] [main] user.language = en
   [testng] [2024-07-12 02:48:59,017] [main] user.country = ${user.country}
   [testng] [2024-07-12 02:48:59,017] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-07-12 02:49:00,042] [main] ----------------------------------------
   [testng] [2024-07-12 02:49:00,043] [main] Total files: 17
   [testng] [2024-07-12 02:49:00,043] [main] Scan time: 1.025 s (60 ms/file)
   [testng] [2024-07-12 02:49:00,043] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-12 02:49:01,187] [pool-1-thread-1] Initializing /data/samples/16-bit 320x256x3.ipm: 
   [testng] 02:49:01,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:49:01,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-49-01.log]
   [testng] 02:49:01,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e3512af - End of configuration.
   [testng] [2024-07-12 02:49:01,227] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256xthree.ipm: 
   [testng] 02:49:01,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:49:01,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-49-01.log]
   [testng] 02:49:01,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e0da4c - End of configuration.
   [testng] [2024-07-12 02:49:01,238] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: 
   [testng] 02:49:01,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:49:01,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-49-01.log]
   [testng] 02:49:01,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@628be459 - End of configuration.
   [testng] [2024-07-12 02:49:01,255] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256x1.ipm: 
   [testng] 02:49:01,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:49:01,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-49-01.log]
   [testng] 02:49:01,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53ccd569 - End of configuration.
   [testng] [2024-07-12 02:49:01,266] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: 
   [testng] 02:49:01,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:49:01,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-49-01.log]
   [testng] 02:49:01,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d3244b - End of configuration.
   [testng] [2024-07-12 02:49:01,303] [pool-1-thread-8] Initializing /data/nigel/CD48_75_24hrColor.ipm: 
   [testng] 02:49:01,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:49:01,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-49-01.log]
   [testng] 02:49:01,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e882c94 - End of configuration.
   [testng] [2024-07-12 02:49:01,315] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm: 
   [testng] 02:49:01,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:49:01,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-49-01.log]
   [testng] 02:49:01,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59838a9a - End of configuration.
   [testng] [2024-07-12 02:49:01,324] [pool-1-thread-6] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: 
   [testng] 02:49:01,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:49:01,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-49-01.log]
   [testng] 02:49:01,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ee1e4c - End of configuration.
   [testng] [2024-07-12 02:49:01,340] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: 
   [testng] 02:49:01,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:49:01,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-49-01.log]
   [testng] 02:49:01,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f9603c5 - End of configuration.
   [testng] [2024-07-12 02:49:01,353] [pool-1-thread-4] Initializing /data/jcb/200810162/mut BA no bio.ipm: 
   [testng] 02:49:01,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:49:01,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-49-01.log]
   [testng] 02:49:01,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@482bf30f - End of configuration.
   [testng] [2024-07-12 02:49:01,377] [pool-1-thread-3] Initializing /data/christopher/Color48 Copy.ipm: 
   [testng] 02:49:01,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:49:01,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-49-01.log]
   [testng] 02:49:01,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff7bee9 - End of configuration.
   [testng] [2024-07-12 02:49:01,391] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm: 
   [testng] 02:49:01,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:49:01,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:49:01,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-49-01.log]
   [testng] 02:49:01,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82e879f - End of configuration.
   [testng] [2024-07-12 02:49:03,113] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm: 
   [testng] [2024-07-12 02:49:03,128] [pool-1-thread-8] Initializing /data/samples/24bit 300x200x3.ipm: 
   [testng] [2024-07-12 02:49:03,139] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: 
   [testng] [2024-07-12 02:49:03,166] [pool-1-thread-4] Initializing /data/jcb/200810162/wt ba no bio.ipm: 
   [testng] [2024-07-12 02:49:03,180] [pool-1-thread-6] Initializing /data/samples/16bit 320x256x1.ipm: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS