Started by upstream project "BIOFORMATS-test-repo" build number 118 originally caused by: Started by upstream project "Trigger" build number 135 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins4580350222244956902.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_18496_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:48:58,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:48:58,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:48:58,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:48:58,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:48:58,906 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:48:58,906 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:48:58,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:48:58,906 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:48:58,907 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:48:58,907 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:48:58,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 422 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-12 02:48:58,917] [main] java.version = 1.8.0_342 [testng] 02:48:58,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:48:58,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:59,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-12_02-48-58.log] [testng] 02:48:59,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-12 02:48:59,004] [main] testng.directory = /data [testng] [2024-07-12 02:48:59,004] [main] testng.configDirectory = /config [testng] [2024-07-12 02:48:59,016] [main] testng.multiplier = 1.0 [testng] [2024-07-12 02:48:59,016] [main] testng.in-memory = false [testng] [2024-07-12 02:48:59,016] [main] testng.allow-missing = false [testng] [2024-07-12 02:48:59,016] [main] user.language = en [testng] [2024-07-12 02:48:59,017] [main] user.country = ${user.country} [testng] [2024-07-12 02:48:59,017] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-12 02:49:00,042] [main] ---------------------------------------- [testng] [2024-07-12 02:49:00,043] [main] Total files: 17 [testng] [2024-07-12 02:49:00,043] [main] Scan time: 1.025 s (60 ms/file) [testng] [2024-07-12 02:49:00,043] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-12 02:49:01,187] [pool-1-thread-1] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 02:49:01,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:49:01,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-12_02-49-01.log] [testng] 02:49:01,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e3512af - End of configuration. [testng] [2024-07-12 02:49:01,227] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 02:49:01,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:49:01,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-12_02-49-01.log] [testng] 02:49:01,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e0da4c - End of configuration. [testng] [2024-07-12 02:49:01,238] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 02:49:01,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:49:01,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-12_02-49-01.log] [testng] 02:49:01,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@628be459 - End of configuration. [testng] [2024-07-12 02:49:01,255] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 02:49:01,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:49:01,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,256 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-12_02-49-01.log] [testng] 02:49:01,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53ccd569 - End of configuration. [testng] [2024-07-12 02:49:01,266] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 02:49:01,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:49:01,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-12_02-49-01.log] [testng] 02:49:01,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d3244b - End of configuration. [testng] [2024-07-12 02:49:01,303] [pool-1-thread-8] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 02:49:01,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:49:01,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-12_02-49-01.log] [testng] 02:49:01,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e882c94 - End of configuration. [testng] [2024-07-12 02:49:01,315] [pool-1-thread-7] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 02:49:01,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:49:01,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-12_02-49-01.log] [testng] 02:49:01,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59838a9a - End of configuration. [testng] [2024-07-12 02:49:01,324] [pool-1-thread-6] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 02:49:01,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:49:01,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-12_02-49-01.log] [testng] 02:49:01,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ee1e4c - End of configuration. [testng] [2024-07-12 02:49:01,340] [pool-1-thread-5] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 02:49:01,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:49:01,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-12_02-49-01.log] [testng] 02:49:01,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f9603c5 - End of configuration. [testng] [2024-07-12 02:49:01,353] [pool-1-thread-4] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 02:49:01,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:49:01,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-12_02-49-01.log] [testng] 02:49:01,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@482bf30f - End of configuration. [testng] [2024-07-12 02:49:01,377] [pool-1-thread-3] Initializing /data/christopher/Color48 Copy.ipm: [testng] 02:49:01,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:49:01,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-12_02-49-01.log] [testng] 02:49:01,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff7bee9 - End of configuration. [testng] [2024-07-12 02:49:01,391] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 02:49:01,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:49:01,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:49:01,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-12_02-49-01.log] [testng] 02:49:01,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82e879f - End of configuration. [testng] [2024-07-12 02:49:03,113] [pool-1-thread-7] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2024-07-12 02:49:03,128] [pool-1-thread-8] Initializing /data/samples/24bit 300x200x3.ipm: [testng] [2024-07-12 02:49:03,139] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-07-12 02:49:03,166] [pool-1-thread-4] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2024-07-12 02:49:03,180] [pool-1-thread-6] Initializing /data/samples/16bit 320x256x1.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS