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Started by upstream project "BIOFORMATS-test-repo" build number 121 originally caused by: Started by upstream project "Trigger" build number 138 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins15053301763583806323.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_18918_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:50:52,551 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:50:52,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:50:52,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:50:52,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:50:52,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:50:52,555 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:50:52,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:50:52,555 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:50:52,556 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:50:52,556 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:50:52,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:50:52,557 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:50:52,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:50:52,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:50:52,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:50:52,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:50:52,929 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:50:52,929 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:50:52,930 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:50:52,930 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:50:52,930 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:50:52,932 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:50:52,932 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 376 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-15 01:50:52,947] [main] java.version = 1.8.0_342 [testng] 01:50:52,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:50:52,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:53,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-15_01-50-52.log] [testng] 01:50:53,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-15 01:50:53,016] [main] testng.directory = /data [testng] [2024-07-15 01:50:53,016] [main] testng.configDirectory = /config [testng] [2024-07-15 01:50:53,036] [main] testng.multiplier = 1.0 [testng] [2024-07-15 01:50:53,036] [main] testng.in-memory = false [testng] [2024-07-15 01:50:53,037] [main] testng.allow-missing = false [testng] [2024-07-15 01:50:53,037] [main] user.language = fr [testng] [2024-07-15 01:50:53,037] [main] user.country = FR [testng] [2024-07-15 01:50:53,037] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-15 01:58:34,556] [main] ---------------------------------------- [testng] [2024-07-15 01:58:34,557] [main] Total files: 7329 [testng] [2024-07-15 01:58:34,557] [main] Scan time: 461.519 s (62 ms/file) [testng] [2024-07-15 01:58:34,557] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-15 02:01:37,494] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 02:01:37,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:01:37,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-15_02-01-37.log] [testng] 02:01:37,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b22fc9 - End of configuration. [testng] [2024-07-15 02:01:37,590] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 02:01:37,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:01:37,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-15_02-01-37.log] [testng] 02:01:37,592 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59d300a - End of configuration. [testng] [2024-07-15 02:01:37,623] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 02:01:37,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:01:37,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-15_02-01-37.log] [testng] 02:01:37,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32c9af82 - End of configuration. [testng] [2024-07-15 02:01:37,651] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 02:01:37,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:01:37,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-15_02-01-37.log] [testng] 02:01:37,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18edffcf - End of configuration. [testng] [2024-07-15 02:01:37,753] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:01:37,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:01:37,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-15_02-01-37.log] [testng] 02:01:37,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a0df297 - End of configuration. [testng] [2024-07-15 02:01:37,817] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 02:01:37,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:01:37,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-15_02-01-37.log] [testng] 02:01:37,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@778d0fc6 - End of configuration. [testng] [2024-07-15 02:01:37,840] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 02:01:37,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:01:37,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-15_02-01-37.log] [testng] 02:01:37,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a0075fb - End of configuration. [testng] [2024-07-15 02:01:37,917] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 02:01:37,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:01:37,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:37,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-15_02-01-37.log] [testng] 02:01:37,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9011841 - End of configuration. [testng] [2024-07-15 02:01:38,002] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 02:01:38,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:01:38,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:38,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-15_02-01-38.log] [testng] 02:01:38,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7621c8f0 - End of configuration. [testng] [2024-07-15 02:01:38,078] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 02:01:38,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:01:38,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:38,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-15_02-01-38.log] [testng] 02:01:38,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48becb4a - End of configuration. [testng] [2024-07-15 02:01:38,125] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 02:01:38,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:01:38,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:38,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-15_02-01-38.log] [testng] 02:01:38,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a0dd669 - End of configuration. [testng] [2024-07-15 02:01:38,804] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 02:01:38,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:01:38,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:01:38,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-15_02-01-38.log] [testng] 02:01:38,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497d8bff - End of configuration. [testng] [2024-07-15 02:01:41,814] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-07-15 02:01:44,679] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-07-15 02:01:44,769] [pool-1-thread-12] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-07-15 02:01:44,905] [pool-1-thread-11] Initializing /data/josh/2101to600astk.stk: [testng] [2024-07-15 02:01:54,111] [pool-1-thread-6] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-07-15 02:01:54,352] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-07-15 02:01:54,398] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-07-15 02:01:54,515] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:01:54,566] [pool-1-thread-10] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-07-15 02:01:54,797] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-07-15 02:01:54,942] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-07-15 02:01:56,028] [pool-1-thread-8] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-07-15 02:01:57,489] [pool-1-thread-6] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-07-15 02:01:57,532] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-07-15 02:01:57,721] [pool-1-thread-9] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-07-15 02:01:57,764] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-07-15 02:01:58,072] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-07-15 02:01:58,138] [pool-1-thread-7] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-07-15 02:01:58,183] [pool-1-thread-2] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-07-15 02:01:58,335] [pool-1-thread-3] Initializing /data/steve/Experiment2.stk: [testng] [2024-07-15 02:01:58,396] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-07-15 02:01:58,529] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-07-15 02:01:58,570] [pool-1-thread-10] Used files list does not include base file [testng] [2024-07-15 02:01:58,581] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-07-15 02:01:58,702] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-15 02:01:58,744] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-15 02:01:58,958] [pool-1-thread-3] Initializing /data/cumol-test-series/23.001: [testng] [2024-07-15 02:01:59,200] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-07-15 02:01:59,271] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-15 02:01:59,561] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-07-15 02:01:59,638] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-15 02:01:59,646] [pool-1-thread-6] Initializing /data/thomas/test.tif: [testng] [2024-07-15 02:01:59,824] [pool-1-thread-7] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-07-15 02:01:59,972] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-07-15 02:02:00,033] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-15 02:02:00,536] [pool-1-thread-6] Initializing /data/qa-16915/m-04.tif: [testng] [2024-07-15 02:02:01,078] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-15 02:02:01,331] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-15 02:02:01,432] [pool-1-thread-3] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-07-15 02:02:01,687] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-15 02:02:01,725] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-15 02:02:01,903] [pool-1-thread-2] Initializing /data/josh/2101to400astk.stk: [testng] [2024-07-15 02:02:04,187] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-07-15 02:02:04,241] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-15 02:02:04,331] [pool-1-thread-7] Initializing /data/ascb/mt aim.tif: [testng] [2024-07-15 02:02:04,449] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-07-15 02:02:04,575] [pool-1-thread-12] Initializing /data/qa-16915/m-02.tif: [testng] [2024-07-15 02:02:05,523] [pool-1-thread-5] Initializing /data/samples/zserSixteen.stk: [testng] [2024-07-15 02:02:05,678] [pool-1-thread-4] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-15 02:02:05,825] [pool-1-thread-6] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-07-15 02:02:05,936] [pool-1-thread-7] Initializing /data/josh/2101to600f.stk: [testng] [2024-07-15 02:02:08,615] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-15 02:02:08,780] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-07-15 02:02:09,184] [pool-1-thread-9] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-07-15 02:02:10,075] [pool-1-thread-4] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-07-15 02:02:10,555] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-15 02:02:10,610] [pool-1-thread-10] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-07-15 02:02:10,661] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-07-15 02:02:11,391] [pool-1-thread-9] Initializing /data/dave/Z Series.stk: [testng] [2024-07-15 02:02:11,971] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-15 02:02:12,024] [pool-1-thread-4] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-07-15 02:02:13,008] [pool-1-thread-10] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-07-15 02:02:13,143] [pool-1-thread-5] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-07-15 02:02:13,875] [pool-1-thread-1] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-07-15 02:02:14,068] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-07-15 02:02:14,331] [pool-1-thread-10] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-07-15 02:02:14,751] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-07-15 02:02:15,060] [pool-1-thread-10] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-07-15 02:02:18,788] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-15 02:02:18,848] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-15 02:02:18,934] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:02:19,617] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:02:19,722] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-15 02:02:19,947] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-07-15 02:02:20,144] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-15 02:02:21,206] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-07-15 02:02:22,239] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-07-15 02:02:22,564] [pool-1-thread-5] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-07-15 02:02:22,858] [pool-1-thread-4] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-07-15 02:02:23,017] [pool-1-thread-1] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-07-15 02:02:23,512] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-07-15 02:02:26,604] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:02:26,677] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] [2024-07-15 02:02:27,754] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2024-07-15 02:02:28,713] [pool-1-thread-4] Initializing 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[pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-07-15 02:02:33,806] [pool-1-thread-12] Initializing /data/qa-16915/m-01.tif: [testng] [2024-07-15 02:02:34,336] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-07-15 02:02:34,428] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-07-15 02:02:35,738] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-07-15 02:02:35,822] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-07-15 02:02:36,239] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-15 02:02:36,418] [pool-1-thread-8] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-07-15 02:02:37,104] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-07-15 02:02:38,834] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:02:38,980] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-07-15 02:02:39,117] [pool-1-thread-5] Initializing /data/ascb/golgi marker.tif: [testng] [2024-07-15 02:02:39,825] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-07-15 02:02:40,009] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-07-15 02:02:40,914] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-07-15 02:02:41,026] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-15 02:02:41,339] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-07-15 02:02:41,602] [pool-1-thread-9] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-07-15 02:02:41,768] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-07-15 02:02:42,033] [pool-1-thread-1] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-07-15 02:02:42,231] [pool-1-thread-4] Initializing /data/aaron/metamorph.stk: [testng] [2024-07-15 02:02:43,072] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-07-15 02:02:43,527] [pool-1-thread-5] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-07-15 02:02:44,186] [pool-1-thread-6] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-07-15 02:02:44,289] [pool-1-thread-1] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-07-15 02:02:44,364] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-07-15 02:02:44,518] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-07-15 02:02:45,183] [pool-1-thread-9] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-07-15 02:02:53,685] [pool-1-thread-2] Initializing /data/qa-16887/m-01.tif: [testng] [2024-07-15 02:02:54,601] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-07-15 02:02:55,047] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2024-07-15 02:02:55,119] [pool-1-thread-4] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-07-15 02:02:59,170] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-07-15 02:02:59,212] [pool-1-thread-8] Initializing /data/samples/10xcalib.stk: [testng] [2024-07-15 02:02:59,247] [pool-1-thread-5] Initializing 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Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-07-15 02:03:02,893] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:03:02,993] [pool-1-thread-1] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-07-15 02:03:05,233] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-15 02:03:05,380] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-07-15 02:03:06,860] [pool-1-thread-3] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-07-15 02:03:07,489] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-07-15 02:03:07,982] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-07-15 02:03:08,512] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-15 02:03:08,580] [pool-1-thread-7] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-07-15 02:03:08,694] [pool-1-thread-11] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-07-15 02:03:09,020] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-07-15 02:03:09,117] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-15 02:03:09,242] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-15 02:03:09,968] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-07-15 02:03:10,431] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-07-15 02:03:10,486] [pool-1-thread-6] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-07-15 02:03:10,966] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-07-15 02:03:12,467] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-15 02:03:12,485] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-15 02:03:12,640] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-07-15 02:03:12,695] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-15 02:03:12,918] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-07-15 02:03:12,983] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-15 02:03:13,570] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-07-15 02:03:14,174] [pool-1-thread-6] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-07-15 02:03:15,019] [pool-1-thread-6] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-07-15 02:03:15,804] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-07-15 02:03:15,992] [pool-1-thread-5] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-07-15 02:03:16,838] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-15 02:03:17,057] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-07-15 02:03:17,385] [pool-1-thread-7] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-07-15 02:03:18,719] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-07-15 02:03:18,803] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-07-15 02:03:18,884] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-15 02:03:18,897] [pool-1-thread-8] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-07-15 02:03:18,970] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-07-15 02:03:20,448] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-07-15 02:03:22,688] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-07-15 02:03:23,005] [pool-1-thread-12] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-07-15 02:03:23,270] [pool-1-thread-12] Initializing /data/jerome/deconv.STK: [testng] [2024-07-15 02:03:24,138] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-07-15 02:03:25,308] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-07-15 02:03:25,762] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-07-15 02:03:26,043] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-07-15 02:03:26,118] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] [2024-07-15 02:03:26,194] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-07-15 02:03:27,459] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-07-15 02:03:27,520] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-15 02:03:27,698] [pool-1-thread-5] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-07-15 02:03:28,572] [pool-1-thread-11] Initializing /data/steve/Experiment2.tif: [testng] [2024-07-15 02:03:28,830] [pool-1-thread-5] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-07-15 02:03:29,001] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:03:29,757] [pool-1-thread-11] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-07-15 02:03:33,107] [pool-1-thread-7] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-07-15 02:03:34,432] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-07-15 02:03:35,320] [pool-1-thread-2] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-07-15 02:03:35,428] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:03:35,726] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-15 02:03:36,143] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-15 02:03:36,771] [pool-1-thread-11] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-07-15 02:03:36,979] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-07-15 02:03:37,174] [pool-1-thread-8] Initializing /data/thomas/t_test2001.tif: [testng] [2024-07-15 02:03:37,495] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-07-15 02:03:37,568] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-07-15 02:03:37,863] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-07-15 02:03:37,923] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-07-15 02:03:37,990] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-07-15 02:03:38,506] [pool-1-thread-3] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-07-15 02:03:38,727] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-07-15 02:03:38,757] [pool-1-thread-11] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 45 seconds Finished: SUCCESS