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Started by upstream project "BIOFORMATS-test-repo" build number 121 originally caused by: Started by upstream project "Trigger" build number 138 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3096110179054305536.sh + '[' avi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_18919_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:53:20,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:53:20,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:53:20,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:53:20,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:53:21,008 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:53:21,008 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:53:21,008 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:53:21,009 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:53:21,009 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:53:21,010 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:53:21,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 399 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-15 01:53:21,021] [main] java.version = 1.8.0_342 [testng] 01:53:21,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:53:21,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:21,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-15_01-53-21.log] [testng] 01:53:21,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-15 01:53:21,099] [main] testng.directory = /data [testng] [2024-07-15 01:53:21,099] [main] testng.configDirectory = /config [testng] [2024-07-15 01:53:21,139] [main] testng.multiplier = 1.0 [testng] [2024-07-15 01:53:21,140] [main] testng.in-memory = false [testng] [2024-07-15 01:53:21,140] [main] testng.allow-missing = false [testng] [2024-07-15 01:53:21,140] [main] user.language = fr [testng] [2024-07-15 01:53:21,140] [main] user.country = FR [testng] [2024-07-15 01:53:21,140] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-15 01:53:22,403] [main] ---------------------------------------- [testng] [2024-07-15 01:53:22,403] [main] Total files: 40 [testng] [2024-07-15 01:53:22,404] [main] Scan time: 1.262 s (31 ms/file) [testng] [2024-07-15 01:53:22,404] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-15 01:57:20,162] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi: [testng] 01:57:20,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:57:20,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:20,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-15_01-57-20.log] [testng] 01:57:20,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@345fde0a - End of configuration. [testng] [2024-07-15 01:57:20,242] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] 01:57:20,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:57:20,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:20,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-15_01-57-20.log] [testng] 01:57:20,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d6e8078 - End of configuration. [testng] [2024-07-15 01:57:20,282] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 01:57:20,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:57:20,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:20,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-15_01-57-20.log] [testng] 01:57:20,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b5b25f9 - End of configuration. [testng] [2024-07-15 01:57:21,193] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] 01:57:21,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:57:21,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-15_01-57-21.log] [testng] 01:57:21,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b57135f - End of configuration. [testng] [2024-07-15 01:57:21,253] [pool-1-thread-9] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 01:57:21,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:57:21,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-15_01-57-21.log] [testng] 01:57:21,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@529d7497 - End of configuration. [testng] [2024-07-15 01:57:21,268] [pool-1-thread-8] Initializing /data/kurt/40x_6um_2.avi: [testng] 01:57:21,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:57:21,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-15_01-57-21.log] [testng] 01:57:21,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bd92c1b - End of configuration. [testng] [2024-07-15 01:57:21,614] [pool-1-thread-7] Initializing /data/william/worm.avi: [testng] 01:57:21,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:57:21,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-15_01-57-21.log] [testng] 01:57:21,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d5d75f - End of configuration. [testng] [2024-07-15 01:57:21,626] [pool-1-thread-6] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] 01:57:21,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:57:21,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-15_01-57-21.log] [testng] 01:57:21,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15cf67a2 - End of configuration. [testng] [2024-07-15 01:57:21,667] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] 01:57:21,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:57:21,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-15_01-57-21.log] [testng] 01:57:21,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6010b9 - End of configuration. [testng] [2024-07-15 01:57:21,689] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 01:57:21,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:57:21,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-15_01-57-21.log] [testng] 01:57:21,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50021738 - End of configuration. [testng] [2024-07-15 01:57:21,895] [pool-1-thread-3] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 01:57:21,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:57:21,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:21,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-15_01-57-21.log] [testng] 01:57:21,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39f91baf - End of configuration. [testng] [2024-07-15 01:58:23,332] [pool-1-thread-2] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 01:58:23,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:58:23,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:58:23,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-15_01-58-23.log] [testng] 01:58:23,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@687e4f82 - End of configuration. [testng] [2024-07-15 01:58:26,123] [pool-1-thread-2] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-07-15 01:58:26,199] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-07-15 01:58:26,474] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-07-15 01:58:26,737] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-07-15 01:58:27,626] [pool-1-thread-6] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-07-15 01:58:27,898] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-07-15 01:58:28,108] [pool-1-thread-5] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-07-15 01:58:28,158] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: [testng] [2024-07-15 01:58:28,429] [pool-1-thread-1] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2024-07-15 01:58:28,680] [pool-1-thread-11] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-07-15 01:58:29,351] [pool-1-thread-8] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-07-15 01:58:29,607] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-07-15 01:58:29,681] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-07-15 01:58:30,064] [pool-1-thread-2] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-07-15 01:58:31,320] [pool-1-thread-10] Initializing /data/chris/APZ04_009.avi: [testng] [2024-07-15 01:58:35,980] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2024-07-15 01:58:36,084] [pool-1-thread-1] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-07-15 01:58:36,228] [pool-1-thread-6] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-07-15 01:58:52,277] [pool-1-thread-11] Initializing /data/kurt/63x_6um.avi: [testng] [2024-07-15 01:58:52,750] [pool-1-thread-7] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-07-15 01:58:52,885] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-07-15 01:58:53,159] [pool-1-thread-9] Initializing /data/ascb/TIRF.avi: [testng] [2024-07-15 01:58:53,507] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-07-15 01:58:54,042] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-07-15 01:58:54,311] [pool-1-thread-1] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-07-15 01:58:54,433] [pool-1-thread-5] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 14 seconds Finished: SUCCESS