![[Jenkins]](/jenkins/static/d8ca237c/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 124 originally caused by: Started by upstream project "Trigger" build number 141 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15058180656367324582.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_19336_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:38,898 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:38,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:21:38,899 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:38,900 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:38,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:38,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:38,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:38,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:38,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:38,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:38,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:38,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:39,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:39,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:39,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:39,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:39,196 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:39,197 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:39,197 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:39,197 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:39,198 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:21:39,199 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:21:39,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-18 01:21:39,213] [main] java.version = 21 [testng] 01:21:39,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:39,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:39,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-18_01-21-39.log] [testng] 01:21:39,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-07-18 01:21:39,275] [main] testng.directory = /data [testng] [2024-07-18 01:21:39,275] [main] testng.configDirectory = /config [testng] [2024-07-18 01:21:39,289] [main] testng.multiplier = 1.0 [testng] [2024-07-18 01:21:39,290] [main] testng.in-memory = false [testng] [2024-07-18 01:21:39,290] [main] testng.allow-missing = false [testng] [2024-07-18 01:21:39,290] [main] user.language = en [testng] [2024-07-18 01:21:39,290] [main] user.country = ${user.country} [testng] [2024-07-18 01:21:39,291] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-18 01:21:54,540] [main] ---------------------------------------- [testng] [2024-07-18 01:21:54,540] [main] Total files: 283 [testng] [2024-07-18 01:21:54,540] [main] Scan time: 15.249 s (53 ms/file) [testng] [2024-07-18 01:21:54,541] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-18 01:30:25,012] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] 01:30:25,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:25,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-18_01-30-25.log] [testng] 01:30:25,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28c63ea8 - End of configuration. [testng] [2024-07-18 01:30:25,089] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] 01:30:25,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:25,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-18_01-30-25.log] [testng] 01:30:25,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@595c496c - End of configuration. [testng] [2024-07-18 01:30:25,164] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] 01:30:25,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:25,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-18_01-30-25.log] [testng] 01:30:25,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ae1f86f - End of configuration. [testng] [2024-07-18 01:30:25,221] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] 01:30:25,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:25,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-18_01-30-25.log] [testng] 01:30:25,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190de6e9 - End of configuration. [testng] [2024-07-18 01:30:25,275] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] 01:30:25,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:25,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-18_01-30-25.log] [testng] 01:30:25,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182ed6e2 - End of configuration. [testng] [2024-07-18 01:30:25,333] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] 01:30:25,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:25,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-18_01-30-25.log] [testng] 01:30:25,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52651402 - End of configuration. [testng] [2024-07-18 01:30:25,607] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] 01:30:25,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:25,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-18_01-30-25.log] [testng] 01:30:25,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@796879c6 - End of configuration. [testng] [2024-07-18 01:30:25,696] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 01:30:25,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:25,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-18_01-30-25.log] [testng] 01:30:25,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249fa48c - End of configuration. [testng] [2024-07-18 01:30:25,775] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] 01:30:25,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:25,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-18_01-30-25.log] [testng] 01:30:25,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60b7ce18 - End of configuration. [testng] [2024-07-18 01:30:25,855] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] 01:30:25,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:25,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:25,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-18_01-30-25.log] [testng] 01:30:25,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7c9d5a - End of configuration. [testng] [2024-07-18 01:30:25,998] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] 01:30:25,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:25,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:26,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-18_01-30-25.log] [testng] 01:30:26,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@297f1f07 - End of configuration. [testng] [2024-07-18 01:30:26,210] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] 01:30:26,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:26,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:26,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-18_01-30-26.log] [testng] 01:30:26,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32359781 - End of configuration. [testng] [2024-07-18 01:30:29,441] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-07-18 01:30:29,497] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-07-18 01:30:30,223] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-07-18 01:30:30,292] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-07-18 01:30:30,512] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-07-18 01:30:30,700] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-07-18 01:30:30,743] [pool-1-thread-10] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-07-18 01:30:30,961] [pool-1-thread-8] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-07-18 01:30:31,041] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-07-18 01:30:31,094] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-07-18 01:30:31,812] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-07-18 01:30:32,430] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-07-18 01:30:32,791] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-07-18 01:30:33,014] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-07-18 01:30:33,217] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-07-18 01:30:33,270] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-07-18 01:30:33,499] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-07-18 01:30:33,515] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-07-18 01:30:33,608] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-07-18 01:30:38,067] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-07-18 01:30:38,361] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-07-18 01:30:38,785] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-07-18 01:30:40,154] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-07-18 01:30:40,509] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-07-18 01:30:40,778] [pool-1-thread-9] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-07-18 01:30:41,091] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-07-18 01:30:41,412] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-07-18 01:30:42,108] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-07-18 01:30:42,209] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-07-18 01:30:42,467] [pool-1-thread-12] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-07-18 01:30:42,523] [pool-1-thread-11] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-07-18 01:30:42,978] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-07-18 01:30:43,077] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-07-18 01:30:43,391] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-07-18 01:30:43,709] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-07-18 01:30:45,187] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-07-18 01:30:45,262] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-07-18 01:30:45,369] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-07-18 01:30:45,843] [pool-1-thread-9] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-07-18 01:30:45,905] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-07-18 01:30:46,047] [pool-1-thread-3] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-07-18 01:30:51,282] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-07-18 01:30:52,193] [pool-1-thread-2] testPixelsHashes: FAILED (series 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-18 01:30:52,319] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-07-18 01:30:52,547] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-07-18 01:30:52,613] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-07-18 01:30:52,783] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-07-18 01:30:52,789] [pool-1-thread-2] testSubimagePixelsHashes: FAILED (series 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-18 01:30:52,853] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-07-18 01:30:52,928] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-07-18 01:30:53,605] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-07-18 01:30:54,255] [pool-1-thread-2] testUnflattenedPixelsHashes: FAILED (series 0, resolution 0) [testng] [2024-07-18 01:30:54,372] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-07-18 01:30:54,597] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-07-18 01:30:54,634] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-07-18 01:30:54,929] [pool-1-thread-10] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-07-18 01:30:55,157] [pool-1-thread-2] testUnflattenedSubimagePixelsHashes: FAILED (series 0, resolution 0, md5 1f9673a0661c965d8218a45a48d11e24, expected cf9d7c68ecbb24a10f47ed168012aa8c or null) [testng] [2024-07-18 01:30:55,372] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-07-18 01:30:55,483] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-07-18 01:30:55,606] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-07-18 01:30:55,723] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-07-18 01:30:56,089] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-07-18 01:30:56,572] [pool-1-thread-11] Initializing /data/qa-17917/f10010.oir: [testng] [2024-07-18 01:31:27,898] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-07-18 01:31:28,065] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-07-18 01:31:28,232] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-07-18 01:31:28,275] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-07-18 01:31:28,607] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-07-18 01:31:28,738] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-07-18 01:31:29,150] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-07-18 01:31:29,895] [pool-1-thread-1] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-07-18 01:31:30,020] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-07-18 01:31:30,083] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-07-18 01:31:33,474] [pool-1-thread-2] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-07-18 01:31:33,532] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-07-18 01:31:33,599] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-07-18 01:31:33,941] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-07-18 01:31:34,517] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-07-18 01:31:34,857] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-07-18 01:31:38,822] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-07-18 01:31:40,849] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-07-18 01:31:41,295] [pool-1-thread-12] Initializing /data/qa-17919/f10187.oir: [testng] [2024-07-18 01:32:01,701] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-07-18 01:32:02,421] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-07-18 01:32:02,667] [pool-1-thread-5] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-07-18 01:32:02,977] [pool-1-thread-9] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-07-18 01:32:03,468] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-07-18 01:32:03,943] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-07-18 01:32:04,687] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-07-18 01:32:04,834] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-07-18 01:32:05,093] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-07-18 01:32:06,968] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-07-18 01:32:07,223] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-07-18 01:32:07,420] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-07-18 01:32:08,140] [pool-1-thread-9] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-07-18 01:32:08,320] [pool-1-thread-5] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-07-18 01:32:09,130] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-07-18 01:32:09,550] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-07-18 01:32:09,820] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-07-18 01:32:10,289] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-07-18 01:32:10,863] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-07-18 01:32:11,540] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-07-18 01:32:11,685] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi: [testng] [2024-07-18 01:32:11,759] [pool-1-thread-10] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-07-18 01:32:12,161] [pool-1-thread-8] Initializing /data/olympus/XYZt.oir: [testng] [2024-07-18 01:32:13,738] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-07-18 01:32:13,823] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-07-18 01:32:14,086] [pool-1-thread-5] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-07-18 01:32:14,921] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-07-18 01:32:15,130] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-07-18 01:32:15,295] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-07-18 01:32:15,459] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-07-18 01:32:16,172] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-07-18 01:32:16,667] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-07-18 01:32:16,769] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-07-18 01:32:16,840] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-07-18 01:32:17,658] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-07-18 01:32:17,723] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-07-18 01:32:18,212] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-07-18 01:32:18,315] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-07-18 01:32:18,404] [pool-1-thread-5] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-07-18 01:32:19,383] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-07-18 01:32:19,750] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-07-18 01:32:20,535] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-07-18 01:32:20,704] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-07-18 01:32:20,792] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-07-18 01:32:21,625] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-07-18 01:32:22,162] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-07-18 01:32:24,816] [pool-1-thread-2] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-07-18 01:32:25,475] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-07-18 01:32:25,527] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-07-18 01:32:26,252] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-07-18 01:32:26,690] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-07-18 01:32:27,190] [pool-1-thread-8] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-07-18 01:32:27,340] [pool-1-thread-3] Initializing /data/qa-17270/stack1.oir: [testng] [2024-07-18 01:32:29,062] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-07-18 01:32:29,684] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-07-18 01:32:30,461] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir: [testng] [2024-07-18 01:32:30,538] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-07-18 01:32:30,979] [pool-1-thread-10] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-07-18 01:32:31,123] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-07-18 01:32:31,451] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-07-18 01:32:32,343] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-07-18 01:32:32,434] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-07-18 01:32:32,533] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-07-18 01:32:32,582] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-07-18 01:32:33,787] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-07-18 01:32:34,098] [pool-1-thread-1] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-07-18 01:32:34,276] [pool-1-thread-6] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-07-18 01:32:34,895] [pool-1-thread-8] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-07-18 01:33:26,743] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-07-18 01:33:26,857] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-07-18 01:33:27,415] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-07-18 01:33:27,990] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-07-18 01:33:28,191] [pool-1-thread-2] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-07-18 01:33:29,030] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-07-18 01:33:29,232] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-07-18 01:33:29,476] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-07-18 01:33:29,752] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-07-18 01:33:30,016] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-07-18 01:33:30,546] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-07-18 01:33:30,617] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-07-18 01:33:31,259] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-07-18 01:33:31,431] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-07-18 01:33:31,901] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-07-18 01:33:32,079] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-07-18 01:33:32,503] [pool-1-thread-10] testSubimagePixelsHashes: FAILED (series 0, md5 36693fa4cad7950d9e7da2142edd5011, expected 00411f728d57e70ea4083f16b98552b2 or null) [testng] [2024-07-18 01:33:32,704] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-07-18 01:33:32,769] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-07-18 01:33:33,019] [pool-1-thread-1] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-07-18 01:33:33,768] [pool-1-thread-6] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-07-18 01:33:34,342] [pool-1-thread-1] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-07-18 01:33:34,391] [pool-1-thread-10] testUnflattenedPixelsHashes: FAILED (series 0, resolution 0) [testng] [2024-07-18 01:33:35,009] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-07-18 01:33:35,214] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-07-18 01:33:35,309] [pool-1-thread-6] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-07-18 01:33:35,527] [pool-1-thread-10] testUnflattenedSubimagePixelsHashes: FAILED (series 0, resolution 0, md5 36693fa4cad7950d9e7da2142edd5011, expected 00411f728d57e70ea4083f16b98552b2 or null) [testng] [2024-07-18 01:33:35,562] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-07-18 01:33:58,488] [pool-1-thread-10] Initializing /data/qa-17335/1.oir: [testng] [2024-07-18 01:33:59,209] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-07-18 01:33:59,393] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 7, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 48 minutes 29 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE