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Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7872382629746862271.sh + '[' lim = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20160_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:52:36,600 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:52:36,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 13:52:36,601 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:52:36,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:52:36,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:52:36,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:52:36,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:52:36,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:52:36,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:52:36,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:52:36,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:52:36,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:52:36,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:52:36,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:52:36,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:52:36,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:52:36,955 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:52:36,956 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:52:36,956 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:52:36,957 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:52:36,957 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 13:52:36,958 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 13:52:36,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 354 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 13:52:36,976] [main] java.version = 1.8.0_342 [testng] 13:52:36,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:52:36,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:37,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_13-52-37.log] [testng] 13:52:37,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 13:52:37,063] [main] testng.directory = /data [testng] [2024-07-22 13:52:37,063] [main] testng.configDirectory = /config [testng] [2024-07-22 13:52:37,081] [main] testng.multiplier = 1.0 [testng] [2024-07-22 13:52:37,082] [main] testng.in-memory = false [testng] [2024-07-22 13:52:37,082] [main] testng.allow-missing = false [testng] [2024-07-22 13:52:37,082] [main] user.language = fr [testng] [2024-07-22 13:52:37,082] [main] user.country = FR [testng] [2024-07-22 13:52:37,082] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 13:52:37,780] [main] ---------------------------------------- [testng] [2024-07-22 13:52:37,780] [main] Total files: 21 [testng] [2024-07-22 13:52:37,781] [main] Scan time: 0.698 s (33 ms/file) [testng] [2024-07-22 13:52:37,781] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 13:52:39,636] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 13:52:39,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:52:39,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_13-52-39.log] [testng] 13:52:39,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6526b567 - End of configuration. [testng] [2024-07-22 13:52:39,736] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 13:52:39,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:52:39,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_13-52-39.log] [testng] 13:52:39,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@201ccc63 - End of configuration. [testng] [2024-07-22 13:52:39,774] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 13:52:39,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:52:39,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_13-52-39.log] [testng] 13:52:39,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df16fa3 - End of configuration. [testng] [2024-07-22 13:52:39,800] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 13:52:39,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:52:39,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_13-52-39.log] [testng] 13:52:39,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5821aa77 - End of configuration. [testng] [2024-07-22 13:52:39,827] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 13:52:39,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:52:39,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_13-52-39.log] [testng] 13:52:39,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568c8ef5 - End of configuration. [testng] [2024-07-22 13:52:39,849] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 13:52:39,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:52:39,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_13-52-39.log] [testng] 13:52:39,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33b6428e - End of configuration. [testng] [2024-07-22 13:52:39,867] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 13:52:39,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:52:39,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_13-52-39.log] [testng] 13:52:39,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@689e84a8 - End of configuration. [testng] [2024-07-22 13:52:39,888] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 13:52:39,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:52:39,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_13-52-39.log] [testng] 13:52:39,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191f95f - End of configuration. [testng] [2024-07-22 13:52:39,908] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 13:52:39,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:52:39,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_13-52-39.log] [testng] 13:52:39,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63341678 - End of configuration. [testng] [2024-07-22 13:52:39,931] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 13:52:39,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:52:39,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_13-52-39.log] [testng] 13:52:39,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@276f289d - End of configuration. [testng] [2024-07-22 13:52:39,953] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 13:52:39,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:52:39,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_13-52-39.log] [testng] 13:52:39,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e8de943 - End of configuration. [testng] [2024-07-22 13:52:39,984] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 13:52:39,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:52:39,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:39,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_13-52-39.log] [testng] 13:52:39,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3698fb4a - End of configuration. [testng] [2024-07-22 13:52:43,579] [pool-1-thread-9] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-07-22 13:52:43,598] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-07-22 13:52:43,618] [pool-1-thread-5] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-07-22 13:52:43,643] [pool-1-thread-2] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-07-22 13:52:43,662] [pool-1-thread-1] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-07-22 13:52:43,679] [pool-1-thread-12] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-07-22 13:52:43,696] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-07-22 13:52:43,716] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS