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Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5973965708727897413.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20161_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:52:38,444 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 13:52:38,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 13:52:38,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:52:38,448 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 13:52:38,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 13:52:38,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 13:52:38,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 13:52:38,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:52:38,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 13:52:38,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 13:52:38,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 13:52:38,450 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 13:52:38,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:52:38,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:52:38,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:52:38,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:52:38,836 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:52:38,836 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:52:38,836 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:52:38,837 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:52:38,837 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 13:52:38,839 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 13:52:38,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 390 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 13:52:38,858] [main] java.version = 1.8.0_342 [testng] 13:52:38,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:52:38,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:38,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_13-52-38.log] [testng] 13:52:38,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 13:52:38,956] [main] testng.directory = /data [testng] [2024-07-22 13:52:38,956] [main] testng.configDirectory = /config [testng] [2024-07-22 13:52:38,985] [main] testng.multiplier = 1.0 [testng] [2024-07-22 13:52:38,986] [main] testng.in-memory = false [testng] [2024-07-22 13:52:38,986] [main] testng.allow-missing = false [testng] [2024-07-22 13:52:38,986] [main] user.language = fr [testng] [2024-07-22 13:52:38,986] [main] user.country = FR [testng] [2024-07-22 13:52:38,986] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 13:52:40,461] [main] ---------------------------------------- [testng] [2024-07-22 13:52:40,461] [main] Total files: 21 [testng] [2024-07-22 13:52:40,462] [main] Scan time: 1.474 s (70 ms/file) [testng] [2024-07-22 13:52:40,462] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 13:52:44,165] [pool-1-thread-1] Initializing /data/stefan/001_q02.txt: [testng] 13:52:44,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:52:44,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_13-52-44.log] [testng] 13:52:44,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8ab7d6 - End of configuration. [testng] [2024-07-22 13:52:44,281] [pool-1-thread-12] Initializing /data/stefan/001_q05.txt: [testng] 13:52:44,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:52:44,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_13-52-44.log] [testng] 13:52:44,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76575e40 - End of configuration. [testng] [2024-07-22 13:52:44,328] [pool-1-thread-11] Initializing /data/stefan/001_q09.txt: [testng] 13:52:44,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:52:44,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_13-52-44.log] [testng] 13:52:44,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ae26427 - End of configuration. [testng] [2024-07-22 13:52:44,561] [pool-1-thread-10] Initializing /data/stefan/001_q15.txt: [testng] 13:52:44,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:52:44,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_13-52-44.log] [testng] 13:52:44,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dfe9dba - End of configuration. [testng] [2024-07-22 13:52:44,637] [pool-1-thread-9] Initializing /data/stefan/001_q03.txt: [testng] 13:52:44,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:52:44,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_13-52-44.log] [testng] 13:52:44,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2567b4a0 - End of configuration. [testng] [2024-07-22 13:52:44,686] [pool-1-thread-7] Initializing /data/stefan/001_q12.txt: [testng] 13:52:44,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:52:44,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_13-52-44.log] [testng] 13:52:44,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64d8c031 - End of configuration. [testng] [2024-07-22 13:52:44,799] [pool-1-thread-8] Initializing /data/stefan/001_q17.txt: [testng] 13:52:44,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:52:44,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_13-52-44.log] [testng] 13:52:44,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d463ae - End of configuration. [testng] [2024-07-22 13:52:44,984] [pool-1-thread-6] Initializing /data/stefan/001_q07.txt: [testng] 13:52:44,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:52:44,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:44,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_13-52-44.log] [testng] 13:52:44,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70a76a19 - End of configuration. [testng] [2024-07-22 13:52:45,109] [pool-1-thread-5] Initializing /data/stefan/001_q11.txt: [testng] 13:52:45,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:52:45,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:45,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_13-52-45.log] [testng] 13:52:45,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44065709 - End of configuration. [testng] [2024-07-22 13:52:45,235] [pool-1-thread-4] Initializing /data/stefan/001_q01.txt: [testng] 13:52:45,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:52:45,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:45,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_13-52-45.log] [testng] 13:52:45,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44cca2dd - End of configuration. [testng] [2024-07-22 13:52:45,291] [pool-1-thread-3] Initializing /data/stefan/001_q08.txt: [testng] 13:52:45,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:52:45,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:45,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_13-52-45.log] [testng] 13:52:45,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26ce6143 - End of configuration. [testng] [2024-07-22 13:52:45,416] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt: [testng] 13:52:45,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:52:45,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:45,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_13-52-45.log] [testng] 13:52:45,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20c0fdd4 - End of configuration. [testng] [2024-07-22 13:52:48,706] [pool-1-thread-4] Initializing /data/stefan/001_q13.txt: [testng] [2024-07-22 13:52:48,790] [pool-1-thread-10] Initializing /data/stefan/001_q18.txt: [testng] [2024-07-22 13:52:48,888] [pool-1-thread-9] Initializing /data/stefan/001_q10.txt: [testng] [2024-07-22 13:52:48,996] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt: [testng] [2024-07-22 13:52:49,040] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] [2024-07-22 13:52:49,155] [pool-1-thread-3] Initializing /data/stefan/001_q14.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS