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Started by upstream project "BIOFORMATS-test-repo" build number 129 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1991693268874327347.sh + '[' visitech = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_20162_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 13:52:42,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 13:52:42,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 13:52:42,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 13:52:42,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 13:52:42,817 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 13:52:42,818 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 13:52:42,818 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 13:52:42,818 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 13:52:42,819 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 13:52:42,820 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 13:52:42,820 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 520 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-22 13:52:42,837] [main] java.version = 1.8.0_342 [testng] 13:52:42,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:52:42,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:42,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-22_13-52-42.log] [testng] 13:52:42,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-22 13:52:42,914] [main] testng.directory = /data [testng] [2024-07-22 13:52:42,915] [main] testng.configDirectory = /config [testng] [2024-07-22 13:52:42,940] [main] testng.multiplier = 1.0 [testng] [2024-07-22 13:52:42,941] [main] testng.in-memory = false [testng] [2024-07-22 13:52:42,941] [main] testng.allow-missing = false [testng] [2024-07-22 13:52:42,941] [main] user.language = fr [testng] [2024-07-22 13:52:42,942] [main] user.country = FR [testng] [2024-07-22 13:52:42,942] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-22 13:52:45,117] [main] ---------------------------------------- [testng] [2024-07-22 13:52:45,117] [main] Total files: 45 [testng] [2024-07-22 13:52:45,117] [main] Scan time: 2.175 s (48 ms/file) [testng] [2024-07-22 13:52:45,117] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-22 13:52:53,524] [pool-1-thread-1] Initializing /data/scott/2 channel_Z_timelaps/597.tif: [testng] 13:52:53,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 13:52:53,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:53,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-22_13-52-53.log] [testng] 13:52:53,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a8ee68c - End of configuration. [testng] [2024-07-22 13:52:53,656] [pool-1-thread-12] Initializing /data/brian/070613reA1_2 Report.html: [testng] 13:52:53,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 13:52:53,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:53,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-22_13-52-53.log] [testng] 13:52:53,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36357380 - End of configuration. [testng] [2024-07-22 13:52:53,685] [pool-1-thread-9] Initializing /data/scott/2 channel_Z_timelaps/525.tif: [testng] 13:52:53,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:52:53,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:53,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-22_13-52-53.log] [testng] 13:52:53,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40f6254a - End of configuration. [testng] [2024-07-22 13:52:53,745] [pool-1-thread-10] Initializing /data/kazem/noname Report.html: [testng] 13:52:53,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 13:52:53,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:53,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-22_13-52-53.log] [testng] 13:52:53,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@199377f4 - End of configuration. [testng] [2024-07-22 13:52:53,815] [pool-1-thread-11] Initializing /data/oliver/20x/491 Report.html: [testng] 13:52:53,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:52:53,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:53,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-22_13-52-53.log] [testng] 13:52:53,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@504afbf4 - End of configuration. [testng] [2024-07-22 13:52:53,928] [pool-1-thread-8] Initializing /data/brian/ScreenShot.jpg: [testng] 13:52:53,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 13:52:53,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:53,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-22_13-52-53.log] [testng] 13:52:53,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@648724cc - End of configuration. [testng] [2024-07-22 13:52:54,008] [pool-1-thread-7] Initializing /data/brian/060916-01-561.tif: [testng] 13:52:54,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 13:52:54,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:54,009 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-22_13-52-54.log] [testng] 13:52:54,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71a92896 - End of configuration. [testng] [2024-07-22 13:52:54,136] [pool-1-thread-6] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html: [testng] 13:52:54,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 13:52:54,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:54,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-22_13-52-54.log] [testng] 13:52:54,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f69ffab - End of configuration. [testng] [2024-07-22 13:52:54,178] [pool-1-thread-5] Initializing /data/brian/060916-01 Report.html: [testng] 13:52:54,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 13:52:54,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:54,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-22_13-52-54.log] [testng] 13:52:54,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c478559 - End of configuration. [testng] [2024-07-22 13:52:54,209] [pool-1-thread-4] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html: [testng] 13:52:54,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:52:54,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:54,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-22_13-52-54.log] [testng] 13:52:54,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@349f6388 - End of configuration. [testng] [2024-07-22 13:52:54,237] [pool-1-thread-3] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html: [testng] 13:52:54,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:52:54,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:54,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-22_13-52-54.log] [testng] 13:52:54,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a984faa - End of configuration. [testng] [2024-07-22 13:52:54,264] [pool-1-thread-2] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html: [testng] 13:52:54,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 13:52:54,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:52:54,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-22_13-52-54.log] [testng] 13:52:54,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79d106c0 - End of configuration. [testng] [2024-07-22 13:52:56,577] [pool-1-thread-12] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html: [testng] [2024-07-22 13:52:56,703] [pool-1-thread-1] Initializing /data/oliver/20x/488 Report.html: [testng] [2024-07-22 13:52:56,796] [pool-1-thread-9] Initializing /data/brian/060916-01-488.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS