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Started by upstream project "BIOFORMATS-test-repo" build number 130 originally caused by: Started by upstream project "Trigger" build number 147 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11600885523463095395.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20394_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:41:09,390 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:41:09,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 11:41:09,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:41:09,393 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:41:09,394 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:41:09,395 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:41:09,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:41:09,395 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:41:09,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:41:09,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:41:09,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:41:09,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:41:09,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:41:09,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:41:09,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:41:09,649 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:41:09,658 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:41:09,658 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:41:09,658 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:41:09,659 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:41:09,659 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 11:41:09,660 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 11:41:09,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-23 11:41:09,675] [main] java.version = 11.0.16 [testng] 11:41:09,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:41:09,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:09,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-23_11-41-09.log] [testng] 11:41:09,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-23 11:41:09,754] [main] testng.directory = /data [testng] [2024-07-23 11:41:09,754] [main] testng.configDirectory = /config [testng] [2024-07-23 11:41:09,771] [main] testng.multiplier = 1.0 [testng] [2024-07-23 11:41:09,773] [main] testng.in-memory = false [testng] [2024-07-23 11:41:09,773] [main] testng.allow-missing = false [testng] [2024-07-23 11:41:09,773] [main] user.language = en [testng] [2024-07-23 11:41:09,773] [main] user.country = ${user.country} [testng] [2024-07-23 11:41:09,774] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-23 11:48:57,021] [main] ---------------------------------------- [testng] [2024-07-23 11:48:57,021] [main] Total files: 7329 [testng] [2024-07-23 11:48:57,022] [main] Scan time: 467.247 s (63 ms/file) [testng] [2024-07-23 11:48:57,022] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-23 11:52:05,491] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 11:52:05,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:52:05,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:05,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-23_11-52-05.log] [testng] 11:52:05,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f7f3899 - End of configuration. [testng] [2024-07-23 11:52:05,598] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-23 11:52:05,605] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 11:52:05,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:52:05,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:05,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-23_11-52-05.log] [testng] 11:52:05,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@349664aa - End of configuration. [testng] [2024-07-23 11:52:06,369] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 11:52:06,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:52:06,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-23_11-52-06.log] [testng] 11:52:06,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bcb4065 - End of configuration. [testng] [2024-07-23 11:52:06,506] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 11:52:06,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:52:06,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-23_11-52-06.log] [testng] 11:52:06,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3468fc9e - End of configuration. [testng] [2024-07-23 11:52:06,594] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 11:52:06,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:52:06,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-23_11-52-06.log] [testng] 11:52:06,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf027ba - End of configuration. [testng] [2024-07-23 11:52:06,665] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-23 11:52:06,668] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 11:52:06,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:52:06,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-23_11-52-06.log] [testng] 11:52:06,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@644da0b3 - End of configuration. [testng] [2024-07-23 11:52:06,741] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 11:52:06,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:52:06,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-23_11-52-06.log] [testng] 11:52:06,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76926029 - End of configuration. [testng] [2024-07-23 11:52:06,791] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 11:52:06,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:52:06,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-23_11-52-06.log] [testng] 11:52:06,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d675477 - End of configuration. [testng] [2024-07-23 11:52:06,865] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 11:52:06,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:52:06,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-23_11-52-06.log] [testng] 11:52:06,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d02d4bb - End of configuration. [testng] [2024-07-23 11:52:06,970] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-23 11:52:06,972] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 11:52:06,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:52:06,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:06,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-23_11-52-06.log] [testng] 11:52:06,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d41212e - End of configuration. [testng] [2024-07-23 11:52:07,134] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 11:52:07,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:52:07,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:07,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-23_11-52-07.log] [testng] 11:52:07,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d94a9b - End of configuration. [testng] [2024-07-23 11:52:07,198] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 11:52:07,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:52:07,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:07,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-23_11-52-07.log] [testng] 11:52:07,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6b275 - End of configuration. [testng] [2024-07-23 11:52:08,793] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:09,253] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-07-23 11:52:09,467] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-07-23 11:52:09,828] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-07-23 11:52:10,140] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:10,244] [pool-1-thread-3] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-07-23 11:52:10,399] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-23 11:52:10,531] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:10,531] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:10,544] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:10,606] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:10,784] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-07-23 11:52:10,871] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:10,888] [pool-1-thread-7] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-07-23 11:52:10,995] [pool-1-thread-11] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-07-23 11:52:11,711] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-07-23 11:52:11,947] [pool-1-thread-1] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-07-23 11:52:11,995] [pool-1-thread-9] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-07-23 11:52:12,091] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:12,178] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2024-07-23 11:52:12,318] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:12,453] [pool-1-thread-10] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-07-23 11:52:12,756] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-23 11:52:12,798] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-23 11:52:12,800] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:13,023] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:13,079] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-07-23 11:52:13,196] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-23 11:52:13,265] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-07-23 11:52:13,364] [pool-1-thread-9] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-07-23 11:52:14,150] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-07-23 11:52:14,283] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-07-23 11:52:14,410] [pool-1-thread-6] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-07-23 11:52:14,531] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:14,807] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-07-23 11:52:14,994] [pool-1-thread-6] Initializing /data/josh/2101to600f.stk: [testng] [2024-07-23 11:52:17,356] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-07-23 11:52:17,506] [pool-1-thread-10] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-07-23 11:52:17,742] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:18,153] [pool-1-thread-12] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-07-23 11:52:18,239] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2024-07-23 11:52:18,665] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-07-23 11:52:19,079] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-07-23 11:52:19,167] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:19,213] [pool-1-thread-1] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-07-23 11:52:19,315] [pool-1-thread-11] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-07-23 11:52:19,420] [pool-1-thread-5] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-07-23 11:52:20,394] [pool-1-thread-4] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-07-23 11:52:20,607] [pool-1-thread-3] Initializing /data/samples/zserEight.stk: [testng] [2024-07-23 11:52:20,851] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:20,880] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:20,931] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] [2024-07-23 11:52:21,031] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:21,115] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-07-23 11:52:21,399] [pool-1-thread-8] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-07-23 11:52:23,718] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:23,972] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:24,134] [pool-1-thread-1] Initializing /data/alex/Selected FITC.stk: [testng] [2024-07-23 11:52:24,182] [pool-1-thread-11] Initializing /data/samples/zser24.stk: [testng] [2024-07-23 11:52:24,416] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-07-23 11:52:24,584] [pool-1-thread-4] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-07-23 11:52:24,788] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:24,891] [pool-1-thread-3] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-07-23 11:52:25,062] [pool-1-thread-10] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-07-23 11:52:25,627] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:26,002] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-07-23 11:52:26,641] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:26,740] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:28,827] [pool-1-thread-9] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-07-23 11:52:28,921] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-07-23 11:52:28,984] [pool-1-thread-11] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-07-23 11:52:29,072] [pool-1-thread-10] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-07-23 11:52:29,527] [pool-1-thread-1] Initializing /data/samples/diatoms3d.stk: [testng] [2024-07-23 11:52:29,560] [pool-1-thread-4] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-07-23 11:52:29,800] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:30,238] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:30,702] [pool-1-thread-1] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-07-23 11:52:31,215] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:31,351] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:31,476] [pool-1-thread-11] Initializing /data/samples/10xcalib.tif: [testng] [2024-07-23 11:52:31,554] [pool-1-thread-3] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-07-23 11:52:31,687] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-23 11:52:31,706] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-23 11:52:31,980] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:32,122] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-07-23 11:52:32,224] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:32,396] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-23 11:52:32,450] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-07-23 11:52:32,622] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:32,632] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:33,216] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:33,600] [pool-1-thread-3] Initializing /data/josh/2101to400astk.stk: [testng] [2024-07-23 11:52:35,257] [pool-1-thread-11] Initializing /data/qa-16887/m-01.tif: [testng] [2024-07-23 11:52:35,887] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:36,108] [pool-1-thread-12] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-07-23 11:52:36,410] [pool-1-thread-7] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-07-23 11:52:36,470] [pool-1-thread-1] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-07-23 11:52:36,656] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-07-23 11:52:36,677] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-23 11:52:36,678] [pool-1-thread-4] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-07-23 11:52:37,015] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-07-23 11:52:37,104] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-23 11:52:37,106] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:37,300] [pool-1-thread-2] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-07-23 11:52:37,550] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:37,899] [pool-1-thread-7] Initializing /data/samples/10xcalib.stk: [testng] [2024-07-23 11:52:38,210] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-07-23 11:52:38,421] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:38,653] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-07-23 11:52:38,826] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:39,001] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2024-07-23 11:52:40,125] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-07-23 11:52:40,218] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:40,369] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:40,480] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:40,560] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-07-23 11:52:40,673] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-07-23 11:52:41,040] [pool-1-thread-12] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-07-23 11:52:41,435] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-07-23 11:52:41,468] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-23 11:52:41,620] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:41,647] [pool-1-thread-2] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-07-23 11:52:41,714] [pool-1-thread-4] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-07-23 11:52:41,991] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:42,153] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-07-23 11:52:42,361] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-07-23 11:52:42,653] [pool-1-thread-1] Initializing /data/josh/2101to600astk.stk: [testng] [2024-07-23 11:52:50,067] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-07-23 11:52:50,275] [pool-1-thread-11] Initializing /data/ascb/golgi marker.tif: [testng] [2024-07-23 11:52:50,794] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-07-23 11:52:50,842] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-23 11:52:50,854] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-07-23 11:52:52,888] [pool-1-thread-12] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-07-23 11:52:53,555] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:53,696] [pool-1-thread-5] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-07-23 11:52:53,779] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:53,845] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-07-23 11:52:53,970] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:54,095] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:54,216] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-07-23 11:52:54,293] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-07-23 11:52:54,880] [pool-1-thread-4] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-07-23 11:52:55,219] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:55,476] [pool-1-thread-12] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-07-23 11:52:55,821] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-07-23 11:52:55,972] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-07-23 11:52:56,033] [pool-1-thread-11] Initializing /data/steve/Experiment2.tif: [testng] [2024-07-23 11:52:56,300] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:56,412] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:56,612] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-07-23 11:52:56,860] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-07-23 11:52:57,259] [pool-1-thread-9] Initializing /data/jerome/deconv.STK: [testng] [2024-07-23 11:52:57,401] [pool-1-thread-6] Initializing /data/qa-16915/m-04.tif: [testng] [2024-07-23 11:52:57,747] [pool-1-thread-11] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-07-23 11:52:58,098] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:58,147] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:58,168] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:58,237] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:52:58,307] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-07-23 11:52:58,369] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-23 11:52:58,696] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:58,702] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:58,754] [pool-1-thread-4] Initializing /data/josh/2101to800.stk: [testng] [2024-07-23 11:52:59,464] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:52:59,685] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-07-23 11:52:59,752] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-07-23 11:52:59,824] [pool-1-thread-5] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-07-23 11:52:59,985] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:00,268] [pool-1-thread-12] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-07-23 11:53:00,360] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:53:00,508] [pool-1-thread-11] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-07-23 11:53:01,182] [pool-1-thread-7] Initializing /data/thomas/test.tif: [testng] [2024-07-23 11:53:01,500] [pool-1-thread-6] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-07-23 11:53:01,626] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2024-07-23 11:53:01,914] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:01,926] [pool-1-thread-3] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-07-23 11:53:02,066] [pool-1-thread-12] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-07-23 11:53:02,278] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-07-23 11:53:02,328] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-23 11:53:02,384] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-07-23 11:53:04,341] [pool-1-thread-6] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-07-23 11:53:04,449] [pool-1-thread-10] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-07-23 11:53:05,250] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:05,451] [pool-1-thread-10] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-07-23 11:53:05,583] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-07-23 11:53:06,315] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:06,321] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-07-23 11:53:06,664] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-07-23 11:53:06,720] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:06,869] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:06,984] [pool-1-thread-5] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-07-23 11:53:08,220] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:08,221] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:08,255] [pool-1-thread-9] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-07-23 11:53:08,429] [pool-1-thread-2] Initializing /data/grant/X.STK: [testng] [2024-07-23 11:53:08,887] [pool-1-thread-6] Initializing /data/samples/zserSixteen.stk: [testng] [2024-07-23 11:53:08,919] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-23 11:53:09,099] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-23 11:53:09,460] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-07-23 11:53:10,180] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:10,388] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:10,667] [pool-1-thread-9] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-07-23 11:53:10,877] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-07-23 11:53:11,217] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-07-23 11:53:11,352] [pool-1-thread-2] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-07-23 11:53:11,423] [pool-1-thread-10] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-07-23 11:53:11,903] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:11,982] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:12,293] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:12,332] [pool-1-thread-9] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-07-23 11:53:12,366] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-23 11:53:12,549] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-07-23 11:53:13,031] [pool-1-thread-9] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-07-23 11:53:13,649] [pool-1-thread-3] Initializing /data/thomas/t_test2001.tif: [testng] [2024-07-23 11:53:13,711] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-07-23 11:53:13,789] [pool-1-thread-2] Used files list does not include base file [testng] [2024-07-23 11:53:13,886] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-07-23 11:53:13,910] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-23 11:53:13,910] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:14,163] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-07-23 11:53:14,245] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:14,352] [pool-1-thread-4] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-07-23 11:53:14,523] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-07-23 11:53:14,771] [pool-1-thread-3] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-07-23 11:53:14,954] [pool-1-thread-9] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-07-23 11:53:15,067] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:15,161] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:15,338] [pool-1-thread-6] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-07-23 11:53:21,981] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:22,167] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-07-23 11:53:22,320] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-07-23 11:53:22,552] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:23,915] [pool-1-thread-8] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-07-23 11:53:23,971] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-07-23 11:53:24,018] [pool-1-thread-2] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-07-23 11:53:24,128] [pool-1-thread-4] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-07-23 11:53:24,238] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-07-23 11:53:24,281] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-07-23 11:53:24,328] [pool-1-thread-11] Used files list does not include base file [testng] [2024-07-23 11:53:24,329] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-07-23 11:53:24,805] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:24,856] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:25,008] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:25,298] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-07-23 11:53:25,425] [pool-1-thread-12] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-07-23 11:53:25,549] [pool-1-thread-4] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-07-23 11:53:25,685] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:25,742] [pool-1-thread-3] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-07-23 11:53:26,030] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-07-23 11:53:26,189] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-07-23 11:53:26,217] [pool-1-thread-7] Initializing /data/qa-16915/m-01.tif: [testng] [2024-07-23 11:53:26,654] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-07-23 11:53:26,964] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:27,002] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-07-23 11:53:27,072] [pool-1-thread-12] Used files list does not include base file [testng] [2024-07-23 11:53:27,169] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-07-23 11:53:27,210] [pool-1-thread-8] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-07-23 11:53:27,434] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:27,622] [pool-1-thread-11] Initializing /data/jae/RGB_s34.tif: [testng] [2024-07-23 11:53:27,852] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-07-23 11:53:27,900] [pool-1-thread-4] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-07-23 11:53:28,766] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:28,797] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-07-23 11:53:28,886] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-23 11:53:28,886] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:28,886] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:29,037] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-07-23 11:53:29,116] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-07-23 11:53:29,532] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-07-23 11:53:29,688] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-07-23 11:53:29,836] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-07-23 11:53:30,164] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:30,201] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-07-23 11:53:30,292] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-07-23 11:53:30,354] [pool-1-thread-7] Initializing /data/ascb/mt aim.tif: [testng] [2024-07-23 11:53:30,694] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-07-23 11:53:30,983] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:30,995] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-23 11:53:31,162] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:31,190] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:31,253] [pool-1-thread-11] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:31,383] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-07-23 11:53:31,438] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-07-23 11:53:31,942] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-07-23 11:53:32,003] [pool-1-thread-11] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-07-23 11:53:33,378] [pool-1-thread-9] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-07-23 11:53:33,449] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:33,563] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-07-23 11:53:33,808] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-07-23 11:53:34,307] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-07-23 11:53:34,363] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-23 11:53:35,573] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 12:03:30,519] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 82, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 22 minutes 41 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE