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Started by upstream project "BIOFORMATS-test-repo" build number 130 originally caused by: Started by upstream project "Trigger" build number 147 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins821368896200007641.sh + '[' avi = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20395_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:42:27,393 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:42:27,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 11:42:27,396 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:42:27,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:42:27,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:42:27,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:42:27,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:42:27,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:42:27,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:42:27,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:42:27,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:42:27,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:42:27,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:42:27,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:42:27,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:42:27,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:42:27,754 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:42:27,754 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:42:27,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:42:27,754 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:42:27,754 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 11:42:27,756 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 11:42:27,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 355 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-23 11:42:27,767] [main] java.version = 11.0.16 [testng] 11:42:27,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:42:27,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:42:27,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-23_11-42-27.log] [testng] 11:42:27,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-23 11:42:27,833] [main] testng.directory = /data [testng] [2024-07-23 11:42:27,833] [main] testng.configDirectory = /config [testng] [2024-07-23 11:42:27,850] [main] testng.multiplier = 1.0 [testng] [2024-07-23 11:42:27,852] [main] testng.in-memory = false [testng] [2024-07-23 11:42:27,853] [main] testng.allow-missing = false [testng] [2024-07-23 11:42:27,853] [main] user.language = en [testng] [2024-07-23 11:42:27,853] [main] user.country = ${user.country} [testng] [2024-07-23 11:42:27,853] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-23 11:42:28,988] [main] ---------------------------------------- [testng] [2024-07-23 11:42:28,988] [main] Total files: 40 [testng] [2024-07-23 11:42:28,988] [main] Scan time: 1.135 s (28 ms/file) [testng] [2024-07-23 11:42:28,989] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-23 11:46:37,614] [pool-1-thread-1] Initializing /data/kurt/63x_6um.avi: [testng] 11:46:37,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:46:37,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:37,617 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-23_11-46-37.log] [testng] 11:46:37,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dbb336b - End of configuration. [testng] [2024-07-23 11:46:37,702] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi: [testng] 11:46:37,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:46:37,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:37,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-23_11-46-37.log] [testng] 11:46:37,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@424c0de3 - End of configuration. [testng] [2024-07-23 11:46:38,056] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 11:46:38,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:46:38,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:38,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-23_11-46-38.log] [testng] 11:46:38,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5feb42ad - End of configuration. [testng] [2024-07-23 11:46:38,095] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 11:46:38,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:46:38,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:38,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-23_11-46-38.log] [testng] 11:46:38,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203623cf - End of configuration. [testng] [2024-07-23 11:46:38,148] [pool-1-thread-9] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 11:46:38,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:46:38,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:38,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-23_11-46-38.log] [testng] 11:46:38,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2cfc94 - End of configuration. [testng] [2024-07-23 11:46:38,217] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 11:46:38,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:46:38,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:38,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-23_11-46-38.log] [testng] 11:46:38,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@134f98e9 - End of configuration. [testng] [2024-07-23 11:46:38,273] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 11:46:38,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:46:38,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:38,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-23_11-46-38.log] [testng] 11:46:38,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28924e68 - End of configuration. [testng] [2024-07-23 11:46:38,294] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] 11:46:38,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:46:38,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:38,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-23_11-46-38.log] [testng] 11:46:38,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ebdc72 - End of configuration. [testng] [2024-07-23 11:46:51,182] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 11:46:51,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:46:51,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:51,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-23_11-46-51.log] [testng] 11:46:51,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f089ff5 - End of configuration. [testng] [2024-07-23 11:46:51,257] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] 11:46:51,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:46:51,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:51,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-23_11-46-51.log] [testng] 11:46:51,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c1dd9e9 - End of configuration. [testng] [2024-07-23 11:46:51,288] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi: [testng] 11:46:51,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:46:51,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:51,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-23_11-46-51.log] [testng] 11:46:51,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ea6b18 - End of configuration. [testng] [2024-07-23 11:46:57,018] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: [testng] 11:46:57,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:46:57,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:46:57,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-23_11-46-57.log] [testng] 11:46:57,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45c6bed6 - End of configuration. [testng] [2024-07-23 11:46:59,147] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-07-23 11:46:59,167] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-07-23 11:46:59,193] [pool-1-thread-10] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-07-23 11:46:59,246] [pool-1-thread-4] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-07-23 11:46:59,280] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-07-23 11:46:59,307] [pool-1-thread-12] Initializing /data/william/worm.avi: [testng] [2024-07-23 11:46:59,317] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-07-23 11:46:59,344] [pool-1-thread-2] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-07-23 11:46:59,374] [pool-1-thread-8] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-07-23 11:46:59,591] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-07-23 11:46:59,911] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-07-23 11:46:59,994] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-07-23 11:47:00,181] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi: [testng] [2024-07-23 11:47:00,448] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-07-23 11:47:02,102] [pool-1-thread-12] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-07-23 11:47:02,340] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-07-23 11:47:02,391] [pool-1-thread-11] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-07-23 11:47:02,550] [pool-1-thread-2] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-07-23 11:47:02,626] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-07-23 11:47:02,689] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-07-23 11:47:02,737] [pool-1-thread-11] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-07-23 11:47:02,823] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-07-23 11:47:03,079] [pool-1-thread-1] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-07-23 11:47:03,190] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-07-23 11:47:03,319] [pool-1-thread-2] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-07-23 11:47:03,325] [pool-1-thread-10] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 47 seconds Finished: SUCCESS