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Started by upstream project "BIOFORMATS-test-repo" build number 130 originally caused by: Started by upstream project "Trigger" build number 147 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins6414158732632738815.sh + '[' micromanager = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20397_merge_ci -v /uod/idr/repos/curated/micromanager:/data -v /uod/idr-scratch/merge-ci/curated/micromanager:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:47:22,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:47:22,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 11:47:22,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:47:22,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:47:22,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:47:22,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:47:22,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:47:22,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:47:22,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:47:22,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:47:22,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:47:22,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:47:23,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:47:23,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:47:23,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:47:23,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:47:23,126 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:47:23,127 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:47:23,127 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:47:23,127 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:47:23,127 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 11:47:23,128 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 11:47:23,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-23 11:47:23,137] [main] java.version = 11.0.16 [testng] 11:47:23,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:47:23,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:47:23,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-23_11-47-23.log] [testng] 11:47:23,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-23 11:47:23,188] [main] testng.directory = /data [testng] [2024-07-23 11:47:23,188] [main] testng.configDirectory = /config [testng] [2024-07-23 11:47:23,198] [main] testng.multiplier = 1.0 [testng] [2024-07-23 11:47:23,199] [main] testng.in-memory = false [testng] [2024-07-23 11:47:23,199] [main] testng.allow-missing = false [testng] [2024-07-23 11:47:23,199] [main] user.language = en [testng] [2024-07-23 11:47:23,200] [main] user.country = ${user.country} [testng] [2024-07-23 11:47:23,200] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-23 11:47:34,450] [main] ---------------------------------------- [testng] [2024-07-23 11:47:34,451] [main] Total files: 1686 [testng] [2024-07-23 11:47:34,451] [main] Scan time: 11.25 s (6 ms/file) [testng] [2024-07-23 11:47:34,451] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 49 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-23 11:52:49,834] [pool-1-thread-1] Initializing /data/public/1.4.22/thomas/test/test_stack/test_stack_MMStack_Pos0_metadata.txt: [testng] 11:52:49,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:52:49,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:49,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-23_11-52-49.log] [testng] 11:52:49,839 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77644e81 - End of configuration. [testng] [2024-07-23 11:52:49,875] [pool-1-thread-12] Initializing /data/eric/GFP-Aladin mCh-Tub_5/Acqusition.xml: [testng] 11:52:49,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:52:49,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:49,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-23_11-52-49.log] [testng] 11:52:49,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b48e24 - End of configuration. [testng] [2024-07-23 11:52:50,740] [pool-1-thread-11] Initializing /data/public/1.4.22/sebastien/Test_Dataset_MultiPosition_Stack_1_MMStack_Pos0_metadata.txt: [testng] 11:52:50,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:52:50,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:52:50,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-23_11-52-50.log] [testng] 11:52:50,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@89886ae - End of configuration. [testng] [2024-07-23 11:53:07,440] [pool-1-thread-10] Initializing /data/nico/test2/img_000000000_Cy5_000.tif: [testng] 11:53:07,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:53:07,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:07,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-23_11-53-07.log] [testng] 11:53:07,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c00aec8 - End of configuration. [testng] [2024-07-23 11:53:07,475] [pool-1-thread-9] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_006.tif: [testng] 11:53:07,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:53:07,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:07,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-23_11-53-07.log] [testng] 11:53:07,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eff709c - End of configuration. [testng] [2024-07-23 11:53:07,604] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-23 11:53:07,606] [pool-1-thread-8] Initializing /data/public/1.4.16/serge/Pos4/img_000000000_00-BF0_000.tif: [testng] 11:53:07,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:53:07,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:07,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-23_11-53-07.log] [testng] 11:53:07,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a43d83b - End of configuration. [testng] [2024-07-23 11:53:07,731] [pool-1-thread-7] Initializing /data/nico/test_1/Acqusition.xml: [testng] 11:53:07,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:53:07,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:07,732 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-23_11-53-07.log] [testng] 11:53:07,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d3cf9f0 - End of configuration. [testng] [2024-07-23 11:53:07,792] [pool-1-thread-6] Initializing /data/public/1.4.22/thomas/test/test_sep/Pos0/img_000000000_FITC_000.tif: [testng] 11:53:07,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:53:07,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:07,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-23_11-53-07.log] [testng] 11:53:07,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d689ba0 - End of configuration. [testng] [2024-07-23 11:53:07,827] [pool-1-thread-5] Initializing /data/public/1.4.23/jens/fucci_GFP-geminin_RFP-cdt1_2_MMStack_Pos0_metadata.txt: [testng] 11:53:07,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:53:07,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:07,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-23_11-53-07.log] [testng] 11:53:07,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c92343f - End of configuration. [testng] [2024-07-23 11:53:08,249] [pool-1-thread-4] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_009.tif: [testng] 11:53:08,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:53:08,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:08,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-23_11-53-08.log] [testng] 11:53:08,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6691c3 - End of configuration. [testng] [2024-07-23 11:53:08,321] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-23 11:53:08,324] [pool-1-thread-3] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_009.tif: [testng] 11:53:08,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:53:08,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:08,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-23_11-53-08.log] [testng] 11:53:08,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@335ed9e - End of configuration. [testng] [2024-07-23 11:53:08,425] [pool-1-thread-3] Used files list does not include base file [testng] [2024-07-23 11:53:08,428] [pool-1-thread-2] Initializing /data/nico/Untitled_4_multi_file/img_000000000_gfpFast_000.tif: [testng] 11:53:08,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:53:08,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:53:08,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-23_11-53-08.log] [testng] 11:53:08,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f743854 - End of configuration. [testng] [2024-07-23 11:53:09,737] [pool-1-thread-6] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:09,747] [pool-1-thread-10] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:53:10,078] [pool-1-thread-1] Initializing /data/public/1.4.22/thomas/test/test2_sep/Pos0/metadata.txt: [testng] [2024-07-23 11:53:10,303] [pool-1-thread-6] Initializing /data/pr-3229/1.4-large-acq-take-2_1_MMStack_Pos0_metadata.txt: [testng] [2024-07-23 11:56:04,384] [pool-1-thread-10] Initializing /data/nico/S2-GFP-Histone-Cherry-tub_9_Great2/metadata.txt: [testng] [2024-07-23 11:56:06,337] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:06,513] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:06,540] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:06,550] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:06,656] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:06,691] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:06,727] [pool-1-thread-1] Initializing /data/pr-3253/img_000000000__000.tif: [testng] [2024-07-23 11:56:06,841] [pool-1-thread-7] Initializing /data/david/res test/res test.tif: [testng] [2024-07-23 11:56:07,344] [pool-1-thread-3] Initializing /data/scott/EMonslicefurst2Time_0/img_000000000_491_000.tif: [testng] [2024-07-23 11:56:07,389] [pool-1-thread-9] Initializing /data/nico/MM_test_0/img_0_Cy5_0.tif: [testng] [2024-07-23 11:56:07,429] [pool-1-thread-4] Initializing /data/eric/GFP-Aladin mCh-Tub_3/Acqusition.xml: [testng] [2024-07-23 11:56:07,587] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:07,684] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:07,860] [pool-1-thread-2] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_001_metadata.txt: [testng] [2024-07-23 11:56:08,269] [pool-1-thread-7] Initializing /data/stanislav/s105-GFP-_0/img_000000000_GFP_000.tif: [testng] [2024-07-23 11:56:08,380] [pool-1-thread-1] Initializing /data/eik/1-Pos_000_000/img_000000000_Blue_002.tif: [testng] [2024-07-23 11:56:09,103] [pool-1-thread-8] Initializing /data/public/1.4.16/serge/Pos1/img_000000000_00-BF0_000.tif: [testng] [2024-07-23 11:56:09,364] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:09,563] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:09,646] [pool-1-thread-9] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_006.tif: [testng] [2024-07-23 11:56:09,849] [pool-1-thread-9] Used files list does not include base file [testng] [2024-07-23 11:56:10,149] [pool-1-thread-2] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_001_metadata.txt: [testng] [2024-07-23 11:56:10,551] [pool-1-thread-3] Initializing /data/eric/GFP-Aladin mCh-Tub_1/Acqusition.xml: [testng] [2024-07-23 11:56:11,133] [pool-1-thread-12] Initializing /data/qa-4984/img_000000000__000.tif: [testng] [2024-07-23 11:56:11,267] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:11,491] [pool-1-thread-5] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_008.tif: [testng] [2024-07-23 11:56:11,698] [pool-1-thread-5] Used files list does not include base file [testng] [2024-07-23 11:56:12,214] [pool-1-thread-2] Initializing /data/public/1.4.16/serge/Pos3/img_000000000_00-BF0_000.tif: [testng] [2024-07-23 11:56:12,591] [pool-1-thread-4] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_007.tif: [testng] [2024-07-23 11:56:12,801] [pool-1-thread-4] Used files list does not include base file [testng] [2024-07-23 11:56:12,805] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:13,054] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:13,343] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:13,360] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:13,586] [pool-1-thread-7] Initializing /data/nico/test-ASI-Z_181/img_000000004_FITC_008.tif: [testng] [2024-07-23 11:56:13,701] [pool-1-thread-7] Used files list does not include base file [testng] [2024-07-23 11:56:13,703] [pool-1-thread-12] Initializing /data/eric/GFP-Aladin mCh-Tub_2/Acqusition.xml: [testng] [2024-07-23 11:56:13,817] [pool-1-thread-3] Initializing /data/eric/GFP-Aladin mCh-Tub_0/Acqusition.xml: [testng] [2024-07-23 11:56:14,485] [pool-1-thread-1] Initializing /data/nico/test-ASI-Z_181/img_000000004_Cy3_007.tif: [testng] [2024-07-23 11:56:14,633] [pool-1-thread-1] Used files list does not include base file [testng] [2024-07-23 11:56:15,283] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:16,061] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:16,473] [pool-1-thread-12] Initializing /data/scott/EMoffchanfurst2Time_0/img_000000000_491_000.tif: [testng] [2024-07-23 11:56:16,873] [pool-1-thread-8] Initializing /data/eric/GFP-Aladin mCh-Tub_4/Acqusition.xml: [testng] [2024-07-23 11:56:17,773] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:18,017] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:18,072] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:18,158] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:18,160] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:18,365] [pool-1-thread-12] Initializing /data/public/1.4.22/thomas/test/test2_stack/MMStack_Pos0_metadata.txt: [testng] [2024-07-23 11:56:18,523] [pool-1-thread-3] Initializing /data/scott/EMoffslicefurst2Time_0/img_000000000_491_000.tif: [testng] [2024-07-23 11:56:18,762] [pool-1-thread-5] Initializing /data/colin/20121205_H_rel_3c_0nm_1/img_000000000_Cy5_000.tif: [testng] [2024-07-23 11:56:19,251] [pool-1-thread-9] Initializing /data/david/trial 2 part 3 40x_0/Acqusition.xml: [testng] [2024-07-23 11:56:19,319] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:19,506] [pool-1-thread-12] Initializing /data/public/1.4.16/serge/Pos0/img_000000000_00-BF0_000.tif: [testng] [2024-07-23 11:56:19,888] [pool-1-thread-7] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:19,926] [pool-1-thread-2] Initializing /data/david/img_000000000_white_000.tif: [testng] [2024-07-23 11:56:22,872] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:22,889] [pool-1-thread-4] Initializing /data/public/1.4.16/serge/Pos2/img_000000000_00-BF0_000.tif: [testng] [2024-07-23 11:56:23,092] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:23,366] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:23,565] [pool-1-thread-3] Initializing /data/scott/EMonchanfurst2Time_0/img_000000000_491_000.tif: [testng] [2024-07-23 11:56:23,785] [pool-1-thread-9] Initializing /data/kally/img_000000000_Brightfield_000.tif: [testng] [2024-07-23 11:56:26,203] [pool-1-thread-7] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_001_000_metadata.txt: [testng] [2024-07-23 11:56:26,387] [pool-1-thread-1] Initializing /data/public/1.4.16/serge/Pos5/img_000000000_00-BF0_000.tif: [testng] [2024-07-23 11:56:26,796] [pool-1-thread-3] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:27,074] [pool-1-thread-12] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:27,434] [pool-1-thread-3] Initializing /data/qa-17040/hyper2.0_1_MMStack_1-Pos_000_000_metadata.txt: [testng] [2024-07-23 11:56:27,807] [pool-1-thread-5] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:28,777] [pool-1-thread-2] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:30,738] [pool-1-thread-4] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:31,747] [pool-1-thread-1] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:33,313] [pool-1-thread-9] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [2024-07-23 11:56:40,522] [pool-1-thread-8] testSaneUsedFiles: FAILED (Used files does not start with getCurrentFile) [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2597, Failures: 37, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 27 minutes 54 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE