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Started by upstream project "BIOFORMATS-test-repo" build number 130 originally caused by: Started by upstream project "Trigger" build number 147 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins196344420153559527.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20398_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 11:51:38,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:51:38,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 11:51:38,226 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:51:38,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:51:38,227 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:51:38,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:51:38,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:51:38,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:51:38,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:51:38,229 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:51:38,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:51:38,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:51:38,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:51:38,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:51:38,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:51:38,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:51:38,508 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:51:38,508 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:51:38,508 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:51:38,509 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:51:38,509 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 11:51:38,509 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 11:51:38,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-23 11:51:38,520] [main] java.version = 11.0.16 [testng] 11:51:38,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:51:38,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:38,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-23_11-51-38.log] [testng] 11:51:38,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-07-23 11:51:38,590] [main] testng.directory = /data [testng] [2024-07-23 11:51:38,590] [main] testng.configDirectory = /config [testng] [2024-07-23 11:51:38,629] [main] testng.multiplier = 1.0 [testng] [2024-07-23 11:51:38,631] [main] testng.in-memory = false [testng] [2024-07-23 11:51:38,631] [main] testng.allow-missing = false [testng] [2024-07-23 11:51:38,631] [main] user.language = en [testng] [2024-07-23 11:51:38,631] [main] user.country = ${user.country} [testng] [2024-07-23 11:51:38,631] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-07-23 11:51:48,856] [main] ---------------------------------------- [testng] [2024-07-23 11:51:48,856] [main] Total files: 268 [testng] [2024-07-23 11:51:48,856] [main] Scan time: 10.225 s (38 ms/file) [testng] [2024-07-23 11:51:48,856] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-23 11:51:58,387] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] 11:51:58,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:51:58,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-23_11-51-58.log] [testng] 11:51:58,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19ca3c3d - End of configuration. [testng] [2024-07-23 11:51:58,443] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] 11:51:58,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:51:58,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-23_11-51-58.log] [testng] 11:51:58,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@266e47f5 - End of configuration. [testng] [2024-07-23 11:51:58,486] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] 11:51:58,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:51:58,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-23_11-51-58.log] [testng] 11:51:58,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27e81945 - End of configuration. [testng] [2024-07-23 11:51:58,510] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] 11:51:58,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:51:58,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-23_11-51-58.log] [testng] 11:51:58,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@195e4f02 - End of configuration. [testng] [2024-07-23 11:51:58,545] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] 11:51:58,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:51:58,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-23_11-51-58.log] [testng] 11:51:58,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1302c3 - End of configuration. [testng] [2024-07-23 11:51:58,571] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] 11:51:58,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:51:58,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-23_11-51-58.log] [testng] 11:51:58,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e362cb5 - End of configuration. [testng] [2024-07-23 11:51:58,609] [pool-1-thread-7] Initializing /data/steve/TIFF/ta269 TIFF: [testng] 11:51:58,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:51:58,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-23_11-51-58.log] [testng] 11:51:58,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e6cae32 - End of configuration. [testng] [2024-07-23 11:51:58,637] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] 11:51:58,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:51:58,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-23_11-51-58.log] [testng] 11:51:58,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@259147ab - End of configuration. [testng] [2024-07-23 11:51:58,656] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] 11:51:58,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:51:58,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-23_11-51-58.log] [testng] 11:51:58,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ad6c9be - End of configuration. [testng] [2024-07-23 11:51:58,671] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] 11:51:58,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:51:58,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-23_11-51-58.log] [testng] 11:51:58,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ce942fc - End of configuration. [testng] [2024-07-23 11:51:58,690] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 11:51:58,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:51:58,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-23_11-51-58.log] [testng] 11:51:58,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@259294a0 - End of configuration. [testng] [2024-07-23 11:51:58,715] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] 11:51:58,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:51:58,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:51:58,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-23_11-51-58.log] [testng] 11:51:58,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7ac6fa - End of configuration. [testng] [2024-07-23 11:51:59,976] [pool-1-thread-9] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-07-23 11:52:00,375] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-07-23 11:52:00,398] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-07-23 11:52:00,416] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-07-23 11:52:00,725] [pool-1-thread-7] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-07-23 11:52:00,738] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-07-23 11:52:00,746] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-07-23 11:52:00,767] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-07-23 11:52:00,953] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-07-23 11:52:00,990] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-07-23 11:52:01,020] [pool-1-thread-1] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-07-23 11:52:01,171] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-07-23 11:52:01,485] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-07-23 11:52:01,608] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-07-23 11:52:01,679] [pool-1-thread-12] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-07-23 11:52:01,694] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-07-23 11:52:01,741] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-07-23 11:52:01,820] [pool-1-thread-6] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-07-23 11:52:01,877] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-07-23 11:52:01,923] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-07-23 11:52:01,948] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-07-23 11:52:02,124] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-07-23 11:52:02,209] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-07-23 11:52:02,358] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-07-23 11:52:02,404] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-07-23 11:52:02,433] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-07-23 11:52:02,536] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-07-23 11:52:02,577] [pool-1-thread-9] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-07-23 11:52:02,713] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-07-23 11:52:02,727] [pool-1-thread-12] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-07-23 11:52:02,882] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-07-23 11:52:02,937] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-07-23 11:52:02,982] [pool-1-thread-11] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-07-23 11:52:03,000] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-07-23 11:52:03,024] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-07-23 11:52:03,107] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-07-23 11:52:03,151] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-07-23 11:52:03,313] [pool-1-thread-1] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-07-23 11:52:03,360] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-07-23 11:52:03,531] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-07-23 11:52:03,547] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-07-23 11:52:03,557] [pool-1-thread-9] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-07-23 11:52:03,585] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-07-23 11:52:03,678] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-07-23 11:52:03,752] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-07-23 11:52:03,961] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-07-23 11:52:03,975] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-07-23 11:52:04,035] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-07-23 11:52:04,161] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-07-23 11:52:04,235] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-07-23 11:52:04,260] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-07-23 11:52:04,348] [pool-1-thread-1] Initializing /data/steve/FITS/M104.fits: [testng] [2024-07-23 11:52:04,353] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-07-23 11:52:04,387] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-07-23 11:52:04,416] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-07-23 11:52:04,531] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-07-23 11:52:04,556] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-07-23 11:52:04,579] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-07-23 11:52:04,652] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-07-23 11:52:04,692] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-07-23 11:52:04,726] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-07-23 11:52:04,793] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-07-23 11:52:04,935] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-07-23 11:52:04,992] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-07-23 11:52:05,070] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-07-23 11:52:05,116] [pool-1-thread-11] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-07-23 11:52:05,124] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-07-23 11:52:05,142] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-07-23 11:52:05,276] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-07-23 11:52:05,325] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-07-23 11:52:05,383] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-07-23 11:52:05,455] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-07-23 11:52:05,546] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-07-23 11:52:05,613] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-07-23 11:52:05,650] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-07-23 11:52:05,696] [pool-1-thread-7] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-07-23 11:52:05,908] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-07-23 11:52:05,930] [pool-1-thread-1] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-07-23 11:52:05,954] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-07-23 11:52:06,005] [pool-1-thread-8] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-07-23 11:52:06,180] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-07-23 11:52:06,285] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-07-23 11:52:06,377] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-07-23 11:52:06,440] [pool-1-thread-2] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-07-23 11:52:06,504] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-07-23 11:52:06,627] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-07-23 11:52:06,638] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-07-23 11:52:06,714] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-07-23 11:52:06,833] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-07-23 11:52:06,868] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-07-23 11:52:07,054] [pool-1-thread-5] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-07-23 11:52:07,212] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-07-23 11:52:07,234] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-07-23 11:52:07,344] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-07-23 11:52:07,404] [pool-1-thread-3] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-07-23 11:52:07,419] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-07-23 11:52:07,471] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-07-23 11:52:07,504] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-07-23 11:52:07,586] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-07-23 11:52:07,727] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-07-23 11:52:08,062] [pool-1-thread-3] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-07-23 11:52:08,523] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-07-23 11:52:08,564] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-07-23 11:52:08,656] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-07-23 11:52:08,710] [pool-1-thread-10] Initializing /data/steve/FITS/M51.fits: [testng] [2024-07-23 11:52:08,772] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-07-23 11:52:08,822] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-07-23 11:52:08,898] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-07-23 11:52:08,955] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-07-23 11:52:09,022] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-07-23 11:52:09,145] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-07-23 11:52:09,344] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-07-23 11:52:09,376] [pool-1-thread-10] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-07-23 11:52:09,539] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-07-23 11:52:09,738] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-07-23 11:52:09,748] [pool-1-thread-8] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-07-23 11:52:09,813] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-07-23 11:52:09,938] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-07-23 11:52:10,212] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-07-23 11:52:10,249] [pool-1-thread-2] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-07-23 11:52:10,306] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-07-23 11:52:10,373] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-07-23 11:52:10,413] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-07-23 11:52:10,651] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-07-23 11:52:10,851] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-07-23 11:52:11,158] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-07-23 11:52:11,314] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-07-23 11:52:11,526] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-07-23 11:52:11,676] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-07-23 11:52:11,794] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-07-23 11:52:11,842] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-07-23 11:52:11,935] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-07-23 11:52:11,987] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-07-23 11:52:12,016] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-07-23 11:52:12,141] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-07-23 11:52:12,610] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-07-23 11:52:12,695] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-07-23 11:52:12,735] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-07-23 11:52:12,830] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-07-23 11:52:13,054] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-07-23 11:52:13,263] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-07-23 11:52:13,336] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-07-23 11:52:13,598] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-07-23 11:52:13,737] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-07-23 11:52:13,804] [pool-1-thread-10] Initializing /data/steve/FITS/M13.fits: [testng] [2024-07-23 11:52:13,816] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-07-23 11:52:14,018] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-07-23 11:52:14,049] [pool-1-thread-6] Initializing /data/steve/SBIG/M81 M 40s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 41 seconds Finished: SUCCESS