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Started by upstream project "BIOFORMATS-test-repo" build number 133 originally caused by: Started by upstream project "Trigger" build number 153 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins921935077617239396.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_20812_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:22:47,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:47,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:22:47,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:47,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:47,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:47,916 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:47,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:47,916 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:47,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:47,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:47,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:47,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:48,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:48,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:48,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:48,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:48,314 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:48,315 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:48,315 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:48,316 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:48,316 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:22:48,317 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:22:48,317 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 400 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-07-26 01:22:48,330] [main] java.version = 1.8.0_342 [testng] 01:22:48,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:48,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:48,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-26_01-22-48.log] [testng] 01:22:48,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-07-26 01:22:48,410] [main] testng.directory = /data [testng] [2024-07-26 01:22:48,411] [main] testng.configDirectory = /config [testng] [2024-07-26 01:22:48,431] [main] testng.multiplier = 1.0 [testng] [2024-07-26 01:22:48,431] [main] testng.in-memory = false [testng] [2024-07-26 01:22:48,431] [main] testng.allow-missing = false [testng] [2024-07-26 01:22:48,431] [main] user.language = en [testng] [2024-07-26 01:22:48,431] [main] user.country = ${user.country} [testng] [2024-07-26 01:22:48,432] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-07-26 01:23:08,863] [main] ---------------------------------------- [testng] [2024-07-26 01:23:08,863] [main] Total files: 283 [testng] [2024-07-26 01:23:08,864] [main] Scan time: 20.431 s (72 ms/file) [testng] [2024-07-26 01:23:08,864] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-07-26 01:32:29,546] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] 01:32:29,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:29,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:29,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-26_01-32-29.log] [testng] 01:32:29,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77b0728b - End of configuration. [testng] [2024-07-26 01:32:29,606] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 01:32:29,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:29,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:29,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-26_01-32-29.log] [testng] 01:32:29,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@265d8ad1 - End of configuration. [testng] [2024-07-26 01:32:29,663] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] 01:32:29,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:29,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:29,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-26_01-32-29.log] [testng] 01:32:29,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7569b8db - End of configuration. [testng] [2024-07-26 01:32:29,709] [pool-1-thread-10] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] 01:32:29,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:29,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:29,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-26_01-32-29.log] [testng] 01:32:29,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dde7887 - End of configuration. [testng] [2024-07-26 01:32:30,372] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 01:32:30,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:30,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-26_01-32-30.log] [testng] 01:32:30,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@378e65dd - End of configuration. [testng] [2024-07-26 01:32:30,413] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] 01:32:30,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:30,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-26_01-32-30.log] [testng] 01:32:30,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cac2e38 - End of configuration. [testng] [2024-07-26 01:32:30,476] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] 01:32:30,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:30,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-26_01-32-30.log] [testng] 01:32:30,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d8fb12b - End of configuration. [testng] [2024-07-26 01:32:30,553] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] 01:32:30,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:30,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-26_01-32-30.log] [testng] 01:32:30,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2697eb3f - End of configuration. [testng] [2024-07-26 01:32:30,665] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 01:32:30,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:32:30,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-26_01-32-30.log] [testng] 01:32:30,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f53b9e - End of configuration. [testng] [2024-07-26 01:32:30,953] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 01:32:30,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:32:30,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-26_01-32-30.log] [testng] 01:32:30,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274a2 - End of configuration. [testng] [2024-07-26 01:32:31,027] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 01:32:31,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:32:31,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:31,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-26_01-32-31.log] [testng] 01:32:31,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1714a236 - End of configuration. [testng] [2024-07-26 01:32:31,056] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] 01:32:31,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:32:31,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:31,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-26_01-32-31.log] [testng] 01:32:31,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b6410d - End of configuration. [testng] [2024-07-26 01:32:34,395] [pool-1-thread-11] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-07-26 01:32:34,986] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-07-26 01:32:35,045] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-07-26 01:32:35,240] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-07-26 01:32:35,289] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi: [testng] [2024-07-26 01:32:35,347] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-07-26 01:32:35,755] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-07-26 01:32:35,811] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-07-26 01:32:36,763] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-07-26 01:32:37,327] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-07-26 01:32:37,444] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-07-26 01:32:37,503] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-07-26 01:32:41,356] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-07-26 01:32:41,710] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-07-26 01:32:41,935] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-07-26 01:32:42,564] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-07-26 01:32:42,984] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-07-26 01:32:43,059] [pool-1-thread-2] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-07-26 01:32:43,183] [pool-1-thread-6] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-07-26 01:32:43,553] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-07-26 01:32:43,961] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-07-26 01:32:44,013] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-07-26 01:32:44,697] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-07-26 01:32:45,216] [pool-1-thread-5] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-07-26 01:32:45,347] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-07-26 01:32:45,722] [pool-1-thread-4] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-07-26 01:33:14,894] [pool-1-thread-1] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-07-26 01:33:15,146] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-07-26 01:33:16,435] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-07-26 01:33:16,692] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-07-26 01:33:17,121] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-07-26 01:33:17,238] [pool-1-thread-5] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-07-26 01:33:17,553] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-07-26 01:33:17,748] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-07-26 01:33:18,168] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-07-26 01:33:18,273] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-07-26 01:33:18,549] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-07-26 01:33:18,805] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-07-26 01:33:19,489] [pool-1-thread-9] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-07-26 01:33:19,756] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-07-26 01:33:19,948] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-07-26 01:33:21,313] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-07-26 01:33:21,417] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-07-26 01:33:22,975] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-07-26 01:33:23,480] [pool-1-thread-2] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-07-26 01:33:23,599] [pool-1-thread-12] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-07-26 01:33:23,988] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-07-26 01:33:24,392] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-07-26 01:33:24,468] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-07-26 01:33:24,973] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-07-26 01:33:25,803] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-07-26 01:33:25,997] [pool-1-thread-3] Initializing /data/qa-17919/f10187.oir: [testng] [2024-07-26 01:33:58,657] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-07-26 01:33:58,839] [pool-1-thread-12] Initializing /data/qa-17270/image1.oir: [testng] [2024-07-26 01:33:59,353] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-07-26 01:33:59,445] [pool-1-thread-6] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-07-26 01:33:59,561] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-07-26 01:33:59,965] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-07-26 01:34:00,257] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-07-26 01:34:00,333] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-07-26 01:34:03,169] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-07-26 01:34:04,081] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-07-26 01:34:04,649] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-07-26 01:34:04,883] [pool-1-thread-5] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-07-26 01:34:05,326] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-07-26 01:34:05,696] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-07-26 01:34:05,753] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-07-26 01:34:07,664] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-07-26 01:34:09,681] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-07-26 01:34:10,127] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-07-26 01:34:10,661] [pool-1-thread-2] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-07-26 01:34:11,684] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-07-26 01:34:12,112] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-07-26 01:34:15,422] [pool-1-thread-2] Initializing /data/qa-17270/stack1.oir: [testng] [2024-07-26 01:34:22,118] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-07-26 01:34:23,172] [pool-1-thread-5] Initializing /data/olympus/XYZt.oir: [testng] [2024-07-26 01:34:35,109] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-07-26 01:34:35,522] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-07-26 01:34:35,577] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-07-26 01:34:37,563] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-07-26 01:34:39,756] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-07-26 01:34:39,833] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-07-26 01:34:41,097] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-07-26 01:34:41,352] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-07-26 01:34:43,413] [pool-1-thread-9] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-07-26 01:35:00,823] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-07-26 01:35:04,719] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-07-26 01:35:06,064] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-07-26 01:35:06,300] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-07-26 01:35:06,884] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-07-26 01:35:07,820] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-07-26 01:35:08,275] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-07-26 01:35:09,448] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-07-26 01:35:09,550] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-07-26 01:35:09,646] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-07-26 01:35:09,824] [pool-1-thread-8] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-07-26 01:35:14,762] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-07-26 01:35:14,929] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-07-26 01:35:16,065] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-07-26 01:35:19,973] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-07-26 01:35:20,877] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-07-26 01:35:20,950] [pool-1-thread-12] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-07-26 01:35:25,829] [pool-1-thread-1] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-07-26 01:35:25,990] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-07-26 01:35:27,591] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-07-26 01:35:28,153] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-07-26 01:35:28,919] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-07-26 01:35:29,219] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-07-26 01:35:29,311] [pool-1-thread-10] Initializing /data/qa-17917/f10010.oir: [testng] [2024-07-26 01:36:23,161] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-07-26 01:36:23,380] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-07-26 01:36:28,147] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-07-26 01:36:42,107] [pool-1-thread-6] Initializing /data/qa-17335/1.oir: [testng] [2024-07-26 01:36:42,822] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-07-26 01:36:43,908] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-07-26 01:36:44,593] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-07-26 01:36:45,440] [pool-1-thread-6] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-07-26 01:36:46,519] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-07-26 01:36:47,664] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-07-26 01:36:48,994] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-07-26 01:36:50,145] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-07-26 01:36:51,258] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-07-26 01:37:06,329] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-07-26 01:37:16,235] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-07-26 01:37:21,409] [pool-1-thread-1] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-07-26 01:37:21,456] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-07-26 01:37:22,647] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-07-26 01:37:22,793] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-07-26 01:37:25,097] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-07-26 01:37:26,454] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-07-26 01:37:31,208] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-07-26 01:37:33,305] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-07-26 01:37:44,107] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-07-26 01:37:45,756] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-07-26 01:37:46,952] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-07-26 01:37:47,817] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-07-26 01:37:48,121] [pool-1-thread-5] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-07-26 01:37:49,079] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-07-26 01:37:50,100] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-07-26 01:37:50,380] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-07-26 01:37:51,440] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-07-26 01:37:52,686] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-07-26 01:37:52,816] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-07-26 01:37:53,992] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-07-26 01:37:57,302] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-07-26 01:37:58,936] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-07-26 01:37:59,860] [pool-1-thread-11] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-07-26 01:38:00,464] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-07-26 01:38:01,179] [pool-1-thread-11] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-07-26 01:38:06,953] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-07-26 01:38:08,325] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-07-26 01:38:10,273] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-07-26 01:38:10,445] [pool-1-thread-2] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-07-26 01:40:14,348] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-07-26 01:40:38,290] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-07-26 01:40:38,990] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-07-26 01:40:40,399] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-07-26 01:40:42,296] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-07-26 01:40:43,705] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-07-26 01:40:45,012] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-07-26 01:40:46,027] [pool-1-thread-12] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-07-26 01:40:47,339] [pool-1-thread-12] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-07-26 01:40:51,209] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-07-26 01:41:05,884] [pool-1-thread-11] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-07-26 01:41:07,896] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-07-26 01:41:10,011] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-07-26 01:41:11,373] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-07-26 01:41:12,581] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-07-26 01:41:28,186] [pool-1-thread-9] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-07-26 01:41:29,442] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-07-26 01:41:29,567] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-07-26 01:41:30,863] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-07-26 01:41:32,969] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-07-26 01:41:33,945] [pool-1-thread-12] Initializing /data/qa-16871/Clipboard.tif: [testng] 02:40:18,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:40:18,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:40:18,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-26_02-40-18.log] [testng] 02:40:18,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b06e50 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 77 minutes 34 seconds Finished: SUCCESS