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Started by upstream project "BIOFORMATS-test-repo" build number 24 originally caused by: Started by upstream project "Trigger" build number 27 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins17744502280253268978.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3009_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:31:26,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:31:26,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:31:26,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:31:26,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:31:26,417 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:31:26,417 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:31:26,418 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:31:26,418 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:31:26,419 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 11:31:26,420 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 11:31:26,420 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 476 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 11:31:26,435] [main] java.version = 1.8.0_342 [testng] 11:31:26,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:31:26,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:31:26,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_11-31-26.log] [testng] 11:31:26,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 11:31:26,519] [main] testng.directory = /data [testng] [2024-04-05 11:31:26,520] [main] testng.configDirectory = /config [testng] [2024-04-05 11:31:26,539] [main] testng.multiplier = 1.0 [testng] [2024-04-05 11:31:26,539] [main] testng.in-memory = false [testng] [2024-04-05 11:31:26,539] [main] testng.allow-missing = false [testng] [2024-04-05 11:31:26,539] [main] user.language = en [testng] [2024-04-05 11:31:26,539] [main] user.country = ${user.country} [testng] [2024-04-05 11:31:26,540] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 11:37:56,995] [main] ---------------------------------------- [testng] [2024-04-05 11:37:56,995] [main] Total files: 7329 [testng] [2024-04-05 11:37:56,995] [main] Scan time: 390.455 s (53 ms/file) [testng] [2024-04-05 11:37:56,995] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 11:41:07,996] [pool-1-thread-1] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] 11:41:07,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:41:07,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:07,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_11-41-07.log] [testng] 11:41:07,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38e6399 - End of configuration. [testng] [2024-04-05 11:41:08,063] [pool-1-thread-12] Initializing /data/samples/zserSixteen.stk: [testng] 11:41:08,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:41:08,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_11-41-08.log] [testng] 11:41:08,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c9c9034 - End of configuration. [testng] [2024-04-05 11:41:08,102] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 11:41:08,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:41:08,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_11-41-08.log] [testng] 11:41:08,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a25bd4 - End of configuration. [testng] [2024-04-05 11:41:08,208] [pool-1-thread-10] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] 11:41:08,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:41:08,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_11-41-08.log] [testng] 11:41:08,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17b9e7fc - End of configuration. [testng] [2024-04-05 11:41:08,283] [pool-1-thread-9] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] 11:41:08,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:41:08,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_11-41-08.log] [testng] 11:41:08,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21f2089e - End of configuration. [testng] [2024-04-05 11:41:08,410] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] 11:41:08,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:41:08,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_11-41-08.log] [testng] 11:41:08,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6491626d - End of configuration. [testng] [2024-04-05 11:41:08,434] [pool-1-thread-7] Initializing /data/grant/XYZ_Image.STK: [testng] 11:41:08,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:41:08,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_11-41-08.log] [testng] 11:41:08,435 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7170fc85 - End of configuration. [testng] [2024-04-05 11:41:08,510] [pool-1-thread-6] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] 11:41:08,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:41:08,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_11-41-08.log] [testng] 11:41:08,511 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d68a77 - End of configuration. [testng] [2024-04-05 11:41:08,600] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] 11:41:08,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:41:08,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_11-41-08.log] [testng] 11:41:08,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f99f990 - End of configuration. [testng] [2024-04-05 11:41:08,633] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] 11:41:08,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:41:08,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_11-41-08.log] [testng] 11:41:08,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620e3f69 - End of configuration. [testng] [2024-04-05 11:41:08,731] [pool-1-thread-3] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] 11:41:08,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:41:08,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_11-41-08.log] [testng] 11:41:08,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f27ba14 - End of configuration. [testng] [2024-04-05 11:41:08,885] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] 11:41:08,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:41:08,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:08,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_11-41-08.log] [testng] 11:41:08,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d344684 - End of configuration. [testng] [2024-04-05 11:41:11,135] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-04-05 11:41:11,812] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-04-05 11:41:12,226] [pool-1-thread-4] Initializing /data/josh/2101to600b.stk: [testng] [2024-04-05 11:41:13,416] [pool-1-thread-6] Initializing /data/samples/10xcalib.stk: [testng] [2024-04-05 11:41:13,593] [pool-1-thread-5] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-04-05 11:41:14,322] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-04-05 11:41:14,440] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-04-05 11:41:14,589] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-04-05 11:41:14,669] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-04-05 11:41:14,892] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-04-05 11:41:15,145] [pool-1-thread-12] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-04-05 11:41:15,426] [pool-1-thread-10] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-04-05 11:41:15,757] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-04-05 11:41:16,057] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-04-05 11:41:16,108] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-05 11:41:16,287] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-04-05 11:41:16,508] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-04-05 11:41:16,984] [pool-1-thread-11] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-04-05 11:41:18,238] [pool-1-thread-10] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-04-05 11:41:18,436] [pool-1-thread-7] Initializing /data/steve/Experiment2.tif: [testng] [2024-04-05 11:41:19,216] [pool-1-thread-6] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-04-05 11:41:19,393] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-04-05 11:41:19,465] [pool-1-thread-8] Used files list does not include base file [testng] [2024-04-05 11:41:19,512] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-04-05 11:41:19,760] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-05 11:41:19,784] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-05 11:41:20,075] [pool-1-thread-6] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-04-05 11:41:20,213] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-04-05 11:41:20,487] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-04-05 11:41:20,656] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-04-05 11:41:20,717] [pool-1-thread-2] Used files list does not include base file [testng] [2024-04-05 11:41:20,718] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-04-05 11:41:20,775] [pool-1-thread-10] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-04-05 11:41:20,825] [pool-1-thread-3] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-04-05 11:41:20,883] [pool-1-thread-5] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-04-05 11:41:21,690] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-05 11:41:21,881] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-04-05 11:41:21,904] [pool-1-thread-1] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-04-05 11:41:22,101] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-05 11:41:22,117] [pool-1-thread-5] Used files list does not include base file [testng] [2024-04-05 11:41:22,177] [pool-1-thread-7] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-04-05 11:41:29,885] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-04-05 11:41:29,952] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-05 11:41:30,018] [pool-1-thread-6] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-04-05 11:41:30,091] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-04-05 11:41:30,231] [pool-1-thread-5] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-04-05 11:41:30,605] [pool-1-thread-2] Initializing /data/samples/zseries.stk: [testng] [2024-04-05 11:41:30,713] [pool-1-thread-9] Initializing /data/cumol-test-series/23.001: [testng] [2024-04-05 11:41:31,209] [pool-1-thread-4] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-04-05 11:41:31,756] [pool-1-thread-12] Initializing /data/josh/2101to800.stk: [testng] [2024-04-05 11:41:32,345] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-04-05 11:41:32,385] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-04-05 11:41:32,432] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-04-05 11:41:32,515] [pool-1-thread-6] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-04-05 11:41:32,972] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-04-05 11:41:33,588] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-04-05 11:41:33,702] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-04-05 11:41:34,279] [pool-1-thread-8] Initializing /data/david/tl4.tif: [testng] [2024-04-05 11:41:36,148] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:41:36,235] [pool-1-thread-5] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-04-05 11:41:37,750] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-04-05 11:41:38,352] [pool-1-thread-9] Initializing /data/alex/Selected FITC.stk: [testng] [2024-04-05 11:41:38,599] [pool-1-thread-2] Initializing /data/josh/2101to400astk.stk: [testng] [2024-04-05 11:41:40,502] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:41:41,146] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-04-05 11:41:41,471] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:41:41,622] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:41:41,760] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-04-05 11:41:41,789] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-05 11:41:41,969] [pool-1-thread-9] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-04-05 11:41:43,085] [pool-1-thread-10] Initializing /data/jae/RGB_s34.tif: [testng] [2024-04-05 11:41:43,211] [pool-1-thread-4] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-04-05 11:41:44,072] [pool-1-thread-3] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-04-05 11:41:44,472] [pool-1-thread-12] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-04-05 11:41:44,694] [pool-1-thread-8] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-04-05 11:41:44,819] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-04-05 11:41:44,853] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-05 11:41:44,944] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 11:41:45,665] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-05 11:41:45,935] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-04-05 11:41:46,981] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-04-05 11:41:47,032] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-05 11:41:47,044] [pool-1-thread-12] Initializing 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[2024-04-05 11:41:55,249] [pool-1-thread-2] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-04-05 11:41:55,578] [pool-1-thread-12] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-04-05 11:41:55,725] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-04-05 11:41:56,161] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-04-05 11:41:56,392] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-04-05 11:41:57,480] [pool-1-thread-6] Initializing /data/samples/diatoms3d.stk: [testng] [2024-04-05 11:41:57,712] [pool-1-thread-2] Initializing /data/qa-16915/m-02.tif: [testng] [2024-04-05 11:41:58,339] [pool-1-thread-6] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-04-05 11:41:58,798] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-04-05 11:41:59,088] [pool-1-thread-8] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-04-05 11:42:01,545] [pool-1-thread-6] Initializing /data/qa-16915/m-04.tif: [testng] [2024-04-05 11:42:02,052] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-04-05 11:42:02,433] [pool-1-thread-5] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-04-05 11:42:03,585] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:04,166] [pool-1-thread-2] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-04-05 11:42:04,691] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:05,327] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-04-05 11:42:05,862] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-04-05 11:42:05,925] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-04-05 11:42:06,655] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-04-05 11:42:07,650] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-04-05 11:42:08,278] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-04-05 11:42:08,643] [pool-1-thread-12] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-04-05 11:42:09,146] [pool-1-thread-6] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-04-05 11:42:09,708] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-04-05 11:42:09,857] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-04-05 11:42:09,945] [pool-1-thread-12] Used files list does not include base file [testng] [2024-04-05 11:42:10,433] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:10,684] [pool-1-thread-2] Initializing /data/dave/Z Series.stk: [testng] [2024-04-05 11:42:11,386] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:11,925] [pool-1-thread-3] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-04-05 11:42:12,028] [pool-1-thread-6] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-04-05 11:42:12,444] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-05 11:42:12,973] [pool-1-thread-6] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-04-05 11:42:13,363] [pool-1-thread-2] Initializing /data/ascb/golgi marker.tif: [testng] [2024-04-05 11:42:13,808] [pool-1-thread-12] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-04-05 11:42:14,424] [pool-1-thread-10] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-04-05 11:42:14,671] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-04-05 11:42:14,732] [pool-1-thread-2] Initializing /data/josh/2101to600astk.stk: [testng] [2024-04-05 11:42:22,931] [pool-1-thread-7] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-04-05 11:42:23,098] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-04-05 11:42:23,388] [pool-1-thread-6] Initializing /data/samples/zserEight.stk: [testng] [2024-04-05 11:42:23,548] [pool-1-thread-3] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-04-05 11:42:24,274] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-04-05 11:42:24,369] [pool-1-thread-6] Initializing /data/samples/10xcalib.tif: [testng] [2024-04-05 11:42:24,572] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-04-05 11:42:24,621] [pool-1-thread-10] Used files list does not include base file [testng] [2024-04-05 11:42:24,641] [pool-1-thread-9] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-04-05 11:42:24,692] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-04-05 11:42:26,849] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-04-05 11:42:27,052] [pool-1-thread-7] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-04-05 11:42:27,128] [pool-1-thread-6] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-04-05 11:42:27,770] [pool-1-thread-9] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-04-05 11:42:28,212] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:28,670] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-04-05 11:42:29,071] [pool-1-thread-6] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-04-05 11:42:29,129] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-04-05 11:42:29,420] [pool-1-thread-5] Initializing /data/josh/2101to600e.stk: [testng] [2024-04-05 11:42:30,470] [pool-1-thread-6] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-04-05 11:42:30,610] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-04-05 11:42:30,681] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-04-05 11:42:30,984] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:31,600] [pool-1-thread-10] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-04-05 11:42:31,668] [pool-1-thread-3] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-04-05 11:42:31,798] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-04-05 11:42:31,857] [pool-1-thread-6] Used files list does not include base file [testng] [2024-04-05 11:42:32,773] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:32,842] [pool-1-thread-10] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-04-05 11:42:32,894] [pool-1-thread-1] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-04-05 11:42:33,041] [pool-1-thread-7] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-04-05 11:42:33,522] [pool-1-thread-3] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-04-05 11:42:33,831] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-04-05 11:42:33,879] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-05 11:42:34,508] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-04-05 11:42:34,588] [pool-1-thread-1] Used files list does not include base file [testng] [2024-04-05 11:42:34,596] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-04-05 11:42:34,658] [pool-1-thread-7] Used files list does not include base file [testng] [2024-04-05 11:42:34,849] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-04-05 11:42:35,020] [pool-1-thread-10] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-04-05 11:42:35,078] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-04-05 11:42:35,280] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-04-05 11:42:35,585] [pool-1-thread-5] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-04-05 11:42:35,736] [pool-1-thread-10] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:35,862] [pool-1-thread-3] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-04-05 11:42:36,119] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-04-05 11:42:36,375] [pool-1-thread-5] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-04-05 11:42:37,083] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-04-05 11:42:37,136] [pool-1-thread-9] Used files list does not include base file [testng] [2024-04-05 11:42:37,206] [pool-1-thread-6] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-04-05 11:42:37,396] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-04-05 11:42:37,688] [pool-1-thread-7] Initializing /data/samples/zser24.stk: [testng] [2024-04-05 11:42:37,793] [pool-1-thread-10] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-04-05 11:42:37,937] [pool-1-thread-3] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-04-05 11:42:38,032] [pool-1-thread-12] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-04-05 11:42:38,350] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-04-05 11:42:38,719] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-04-05 11:42:38,757] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-04-05 11:42:39,162] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-04-05 11:42:39,479] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-04-05 11:42:39,774] [pool-1-thread-6] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-04-05 11:42:57,165] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-04-05 11:42:57,280] [pool-1-thread-4] Used files list does not include base file [testng] [2024-04-05 11:42:57,295] [pool-1-thread-9] Initializing /data/thomas/t_test2001.tif: [testng] [2024-04-05 11:42:57,498] [pool-1-thread-10] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-04-05 11:42:57,629] [pool-1-thread-1] Initializing /data/grant/X.STK: [testng] [2024-04-05 11:42:58,106] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-05 11:42:58,406] [pool-1-thread-7] Initializing /data/qa-16915/m-01.tif: [testng] [2024-04-05 11:42:59,713] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-04-05 11:43:01,863] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-04-05 11:43:02,736] [pool-1-thread-4] Initializing /data/aaron/metamorph.stk: [testng] [2024-04-05 11:43:02,922] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-04-05 11:43:03,427] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-04-05 11:43:04,004] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-04-05 11:43:04,534] [pool-1-thread-3] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-04-05 11:43:04,775] [pool-1-thread-1] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-04-05 11:43:04,934] [pool-1-thread-7] Initializing /data/thomas/test.tif: [testng] [2024-04-05 11:43:05,522] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-04-05 11:43:05,679] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-04-05 11:43:05,778] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-04-05 11:43:05,942] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-04-05 11:43:06,033] [pool-1-thread-4] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-04-05 11:43:06,283] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-04-05 11:43:07,125] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 27 seconds Finished: SUCCESS